TCONS_00007153 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007153
Unique NameTCONS_00007153
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007153 ID=TCONS_00007153|Name=TCONS_00007153|organism=Clytia hemisphaerica|type=transcript|length=1307bp
ggagaatatttttttcttttcacaagAGTTTTATTAGCAAAATAAGCAAT
GGAGAAGTTGTTATTGTGCTTGGTATTATTCGTTGGTGCTTTGCGCGCTG
TCACTATCCAAACGCAACCGTGTGAAGGAATCAAATCGATGGCAAAAGTA
ACGAGTGTCGGTATCGAACCTTGCACCGATTACACTTCCAAAGAATGTAG
CATCCCTGAagGTACAAACAGTACCATAGAAGTTCACTTCACACCAGCTA
CTGATCTCACAGACTTGACCACAGATATCCATGCTAAAATTGGACCAATT
TGGGCCCCATACCCCATGGATAAGAGTTTGGTTGACGCATGTAAATCGGA
CTTTATCAAATGTCCAATGAAAGCTGGAGTTGATAATTATTATCATTTCT
CACTTTTGGTCAGCACCACTTACCCAAAGTTAAACCTCAGAGTTCGTTGG
CAATTATTTGACGAGAAGAAACAAACTCAAGTTTGCGTTGAATTCCCAAT
CCGTGTTATCTAAAGAAAGTATTTTGGATGATGTAAGCAAACTTCAGAGT
TCAGAATTCTTTTATAAATGAATAATGTTTTTcttggttttctttttctt
taaatattttttaagtattCAAGTCTTCATTTTGTACGTGGTGTCTAAGA
AAAAGCAGAATTTACCAAGTCACTCTGATATTTGAAACAGAAACTTTTGA
GCGTCTTTTTACGTTAAAGTTCAATTTCGCTTTTATATCTAGACACTCTG
TAGGTGAGCTTTTCTTTAAACGATAATTTTACTTAGATATTAATTTTtac
taaatttgtttttttattcaaaaattgacaaattgttatataattttgat
gatAGTTAAATAGATTTCAAGAGACTCATTTTAAGCAATGATTTTACCGA
ATCAAAAGCTCGGGTGTTAAAGATGTCACTTAGGAAGGACATTTTGTCTT
GCTAATTTATTTTATatgaaattatttctacaaaaaattatttcttcata
ttttttataagctaTAAATAGAATTATATAAAACTTCACGTAGAAAAAAA
ATACagcaaataataaaaatgaaattaaaatatcaaaaaattctCTAAGA
TAAAAAAATGCACTATAAGACTGAACAGAAACTTACTTCAGATGTGGAAT
GATTATTTTGTGTCTGAAAGTTGAGGATTTAAAAGACATCAATTAATGTC
TTCTACACAGCACTTTTAAAgaatagaaaataaaagaaagtaaATCTCTC
GTACTTccgcttgaaactcaaaaaaatctttGGTTAATTCTGCAATGTCA
GCAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00007153-protein

>TCONS_00007153-protein ID=TCONS_00007153-protein|Name=TCONS_00007153-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MEKLLLCLVLFVGALRAVTIQTQPCEGIKSMAKVTSVGIEPCTDYTSKEC
SIPEGTNSTIEVHFTPATDLTDLTTDIHAKIGPIWAPYPMDKSLVDACKS
DFIKCPMKAGVDNYYHFSLLVSTTYPKLNLRVRWQLFDEKKQTQVCVEFP
IRVI
Run BLAST on NCBI

transcript from alignment at sc0000074:367425..371045+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007153 ID=TCONS_00007153|Name=TCONS_00007153|organism=Clytia hemisphaerica|type=transcript|length=3621bp|location=Sequence derived from alignment at sc0000074:367425..371045+ (Clytia hemisphaerica)
ggagaatatttttttcttttcacaagAGTTTTATTAGCAAAATAAGCAAT
GGAGAAGTTGTTATTGTGCTTGGTATTATTCGTTGGTGCTTTGCGCGCTG
TCACTATCCAAACGCAACCGTGTGAAGGAAGTAAGTTATACTCTGCTACA
ATTCATTTTAGCTAAAGGCGTCATACATGATTACATAacaatttcatgaa
atttaatATAATGTTGAAATAAAAACTTGATTTGATAATTATATATTTTG
GAGGTCATGAGGGGTTTCATATGCAAAGTTAGCTGGGTTTAGTCATGTTT
CATAATGAAGTCCTAAAGTCCTAAAGTCTGATTTAGACAACCGTTTGACC
CAAAAAAAATCACTTGTATTTACAAAtcgtttcaaaattattttgtcaAG
ATATACACTGAATCACATCAGCATAGATTTTACCCCTCCCCCACTGGGGA
ATAAAAGGTCAATTCTTTGAATGAGATGGTGAAAACGAGTAATAAAAAAG
TCTTCCTTTCGTTTTGTTTTTCAGTCAAATCGATGGCAAAAGTAACGAGT
GTCGGTATCGAACCTTGCACCGATTACACTTCCAAAGAATGTAGCATCCC
TGAaggtaataaactttttttttacaaaagttatGAAATTTTTCTAGACT
GTCCGCCTTGATAGTCTTGCTTCCCAAATAATCCACAATGATGTTTCTAC
AACATTATTTAGACATTAGATAGCAATATCGTTTGGATGCCTGCTAAAAG
AAATAGTAATTAAATGTTACTTAATACGATTCTGCTAACAGCAACTAAAG
AAGCGAGGAATTCCAGATAAAGGAAGGACGAATTTACCCTTTTAGTAGAC
AGCTATAGAAAAAGGAGTCTCCGGGTCACCCTCAACTGCGTTTGCAAACT
TACAAAGTTTTGATTAACGATGATCTCTCTGTTCTCCAGGTACAAACAGT
ACCATAGAAGTTCACTTCACACCAGCTACTGATCTCACAGACTTGACCAC
AGATATCCATGCTAAAATTGGACCAATTTGGGCCCCATACCCCATGGATA
AGAGTTTGGTTGACGCATGTAAATCGGACTTTATCAAATGTCCAATGAAA
GCTGGAGTTGATAATTATTATCATTTCTCACTTTTGGTCAGCACCACTTA
CCCAAAGGTTAGTTTACACCCCTGTTTCTTTTACAACTTACCCAAAGATA
TGTTAACACCCCTGTTTCTTTTACAACTTACCCAAAGGTTAGTTTACATC
CCTGTTTCTTTTACCACTTACCCAAAGGTTAGTTTACACCCCTGTTTCTT
TTACAACTTACCCAAAGGTTAGTTTACATCCCTGTTTCTTTTACCACCTA
CCCAaaggttacacgttttttttttattagaacacctaaaatttggctga
gcctggatgtgcttattttttttagcaattttcagcctacaatgttctta
aatgcgttcttaatttttcagactactctaaatcgacaatatgatacaaa
ataaagagcacttaaatttggcaaaatttggacaagatttgactctcgac
ttttgaagatccatcTCAAaatcggttaaaactgcttaaaaagaggaaaa
aattgtagtttcttgtcatttttttccaaactgaggttGGGCATGttcta
aagatgttcttaatttttcgacgaatttcagcctatatgttcttttaaac
taggttctaataaaaaaaaacgtgtagtttacACCCCTGTTTTTTTAACA
ACTTACCCAAAGATATGTTAACACCCCTGTCCTTTTACAACTTACCCAAA
GGCTAGTTTACACCCTTGTTTCTTTTACCACTCACCCAAAGGTTAGTTTA
CAACCCTGTTTCTTTTACAACTTACCCAAAGGTTAGTTTACACCCCTGTT
TCTTTTACCACTTACCCAAAGGTTAGTTTACACCCCTGTTTCTTTTACCA
CTCACCCAAAGGTTAGTTTACACCCCTGTTTTTACAACTTACCCAAAGGT
TAGTTTACACCCATGTTTCTTTCACCACCTACCGAAAGGTTAGTTTACAC
CCCCGTTGCTTTTACCACCTACCCAAAGGTTAGTTTACATACCTGTTTCT
TTTACCACTTACCCAAAGGTTAGTTTACACCCCTGTCCTTTTACAACTTA
CCCAAAGGCTAGTTTACACCACTGTTTCTTTCACCACCTACCCAAAGGTT
AGTTTACACCCCTGTTTCTTTTACAACTTACCCAAAGGTTAGTTTACACC
CCTGTTTATATTATATCAACACAAAGAGAATTCACCGTTTAAGTCAACCA
TTGTCTCATTGGAGCTAGTAGCGAATCGCTATATACATTCTTTAATGTTC
TTCTGGTGGGTCATTGCCTTTTTAATCTTGAAGCACATCCCATACTTTAA
CACATTTGGATGCCCCTGTGTCATCAAACTCCCAGTAGATCAATGTATCA
TTGACTTTTGAAGTACCCACCGTCGTTTTAAAATTATtgtacatccctgt
ctcaccgAGTTTAAAGTAAAACCTTACCACGTGGAATTTGCTAGCCCCTG
TTTCTTCGACCTCCTAGTACATATCTCCACCCATTGCCTTTGAAATACAC
CTCTATTTTATCCCATTATCACTAACCTTGagctacacccctgtctcatc
aaGTGAGAAATATTAAACTATCCGACTACATTTGTACACCCTGTGCCCTT
TTATACCCCTGTCTTATTACACACTATCTCTTTATTTCTGTAGTTAAACC
TCAGAGTTCGTTGGCAATTATTTGACGAGAAGAAACAAACTCAAGTTTGC
GTTGAATTCCCAATCCGTGTTATCTAAAGAAAGTATTTTGGATGATGTAA
GCAAACTTCAGAGTTCAGAATTCTTTTATAAATGAATAATGTTTTTcttg
gttttctttttctttaaatattttttaagtattCAAGTCTTCATTTTGTA
CGTGGTGTCTAAGAAAAAGCAGAATTTACCAAGTCACTCTGATATTTGAA
ACAGAAACTTTTGAGCGTCTTTTTACGTTAAAGTTCAATTTCGCTTTTAT
ATCTAGACACTCTGTAGGTGAGCTTTTCTTTAAACGATAATTTTACTTAG
ATATTAATTTTtactaaatttgtttttttattcaaaaattgacaaattgt
tatataattttgatgatAGTTAAATAGATTTCAAGAGACTCATTTTAAGC
AATGATTTTACCGAATCAAAAGCTCGGGTGTTAAAGATGTCACTTAGGAA
GGACATTTTGTCTTGCTAATTTATTTTATatgaaattatttctacaaaaa
attatttcttcatattttttataagctaTAAATAGAATTATATAAAACTT
CACGTAGAAAAAAAATACagcaaataataaaaatgaaattaaaatatcaa
aaaattctCTAAGATAAAAAAATGCACTATAAGACTGAACAGAAACTTAC
TTCAGATGTGGAATGATTATTTTGTGTCTGAAAGTTGAGGATTTAAAAGA
CATCAATTAATGTCTTCTACACAGCACTTTTAAAgaatagaaaataaaag
aaagtaaATCTCTCGTACTTccgcttgaaactcaaaaaaatctttGGTTA
ATTCTGCAATGTCAGCAAAAG

Coding sequence (CDS) from alignment at sc0000074:367425..371045+

>TCONS_00007153 ID=TCONS_00007153|Name=TCONS_00007153|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000074:367425..371045+ (Clytia hemisphaerica)
ATGGAGAAGTTGTTATTGTGCTTGGTATTATTCGTTGGTGCTTTGCGCGC
TGTCACTATCCAAACGCAACCGTGTGAAGGAATCAAATCGATGGCAAAAG
TAACGAGTGTCGGTATCGAACCTTGCACCGATTACACTTCCAAAGAATGT
AGCATCCCTGAagGTACAAACAGTACCATAGAAGTTCACTTCACACCAGC
TACTGATCTCACAGACTTGACCACAGATATCCATGCTAAAATTGGACCAA
TTTGGGCCCCATACCCCATGGATAAGAGTTTGGTTGACGCATGTAAATCG
GACTTTATCAAATGTCCAATGAAAGCTGGAGTTGATAATTATTATCATTT
CTCACTTTTGGTCAGCACCACTTACCCAAAGTTAAACCTCAGAGTTCGTT
GGCAATTATTTGACGAGAAGAAACAAACTCAAGTTTGCGTTGAATTCCCA
ATCCGTGTTATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004011XLOC_004011Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007153-exon-sc0000074-1491911889:367425..367554TCONS_00007153-exon-sc0000074-1491911889:367425..367554Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1510915933:367425..367554TCONS_00007153-exon-sc0000074-1510915933:367425..367554Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1575043694:367425..367554TCONS_00007153-exon-sc0000074-1575043694:367425..367554Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1491911889:367949..368029TCONS_00007153-exon-sc0000074-1491911889:367949..368029Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1510915933:367949..368029TCONS_00007153-exon-sc0000074-1510915933:367949..368029Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1575043694:367949..368029TCONS_00007153-exon-sc0000074-1575043694:367949..368029Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1491911889:368364..368581TCONS_00007153-exon-sc0000074-1491911889:368364..368581Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1510915933:368364..368581TCONS_00007153-exon-sc0000074-1510915933:368364..368581Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1575043694:368364..368581TCONS_00007153-exon-sc0000074-1575043694:368364..368581Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1491911889:370168..371045TCONS_00007153-exon-sc0000074-1491911889:370168..371045Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1510915933:370168..371045TCONS_00007153-exon-sc0000074-1510915933:370168..371045Clytia hemisphaericaexon
TCONS_00007153-exon-sc0000074-1575043694:370168..371045TCONS_00007153-exon-sc0000074-1575043694:370168..371045Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007153-proteinTCONS_00007153-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:367425..371045 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.387735	0.346594	0.475598	0.214753	0.392162	0.275459	20.189	20.1841	49.1467	31.669	43.211	42.1559	43.8594	40.9512	125.148	181.735	68.4502	66.8278	53.7883	52.7273	71.9777	70.5822	97.4347	99.2594	92.2785	80.4677	132.65	128.233	533.246	437.331
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
IPR014756Ig_E-set
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007153 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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