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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007156 ID=TCONS_00007156|Name=TCONS_00007156|organism=Clytia hemisphaerica|type=transcript|length=707bp TCAGATTGTTTAAAACATTTCAGTAGGGAAAATTCCCTTTATGGTTGACC TCTCTCAACCTTTCAGCAATACTCTGACTATAAAAGGCGAACTGGAAGCG TTAAGATGTCACAACAAATATTGTACACATTCGACAGCACAAGTAGAAAA GATGAAGTTGATTTTTATACTTGGAGTATGTCTTCTCATGCAAGGTTGCC AACTGTCGAAAGCAACAGAATACGCTGCTTATGAAAATGAGGATCTGGAT CACAATGGCATGGCAAGTCACCAAAACGAGAACGCAATGGATCACATAGA TGATGCAATTGACAacaatgaagaagaagatgatgatgattttgaagATC AAAATAATGGACCAGtCGAAGACAAAGCAGACATGGGAAAAAAGGGAGAA GACATcattgatgaaaatgatgaagaagatgaagaagaagaagaacattC AAGAGATGCAAACCCTTGGGAAAGTAGAAGACGTTCTTTCAGTAACTGGA GGAGAAGAAGATACCACAGTTTGAGACGTCGATACCACAATTTGAGACGT CGATCGAAAAGCAACTGGCGAAGGCGAAGTATCTCAACATCTCCATCGCG AAGACGGACATTACGAAGACGGACATTATGAAGACGGTGGAGACAAACTG CAAAGAAAATTGGAGCATGAATTATAGTTGCTGCAGGTATAATAGTTAAG AATTGGG Run BLAST on NCBI transcript from alignment at sc0000074:404992..413977+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007156 ID=TCONS_00007156|Name=TCONS_00007156|organism=Clytia hemisphaerica|type=transcript|length=8986bp|location=Sequence derived from alignment at sc0000074:404992..413977+ (Clytia hemisphaerica) TCAGATTGTTTAAAACATTTCAGTAGGGAAAATTCCCTTTATGGTTGACC
TCTCTCAACCTTTCAGCAATACTCTGACTATAAAAGGCGAACTGGAAGCG
TTAAGATGTCACAACAAATATTGTACACATTCGACAGCACAAGTAGAAAA
GATGAAGTTGATTTTTATACTTGGAGTATGTCTTCTCATGCAAGGTAAGT
GCTTATATGTTCCTTTACCTACTAAACAGTAACATTGTTTTCAGTCACGT
GGTGGGTTAACCAAAACTGAGGAGACAAGTTGAAGAAAATTAGTATTATG
CACCCTGTCTATAGGGTATGTTTAAAAACTTGGCGAGGGAAGCGATTGCA
AAGTTTCTTTAAATAATCTCAACCGGCTGTCAACGCGAGAGGTTACTTTG
TTTCCAAgctcttatttcaaaattgaacCAAGTCAAGAGAAATACTTTCA
TTTTCCTCTACAGGTTGCCAACTGTCGAAAGCAACAGAAGGCGCTGCTAC
GAACAAAACAACAACTGCTCATGAAAATGAGGACCCTGATCACGATGGCA
TGACAAGTCACCAAAACGAGAATGTAATGGATCACATAGGTGATGAAATT
GACGACATTGATGATGAaaaagatgatgatgattttgaagATCAAAATAA
TGGATCAGGTTTGTAAAATAATCCATCATTTATGTAATCATTTTATTACC
CAGTAAAGGAACTTAACATTTTTCGCGAACTTTTTCTGTAACCTGGTTTT
TAGGGAGATATATAGTCCCGCTCATTTTAAAGATGAAAGCTATTTATCAA
AGTCGGATTTTCAatagatttgtttcttataaaataaactcTTGTGATTG
TCCTCGAAAGTTTATTATTTtgtgaaatattaaaaaaataaaagattcaa
aaaaaatttgtacctGTTTGACGCTGAGTGAATCTTTTTACGTTTTAGTC
GAAGACAAAGCAGACATGGAAAAAACGGGAGAAGATATCATTGATGAAAA
ttatgatgaagatgaagaagaagagcaTCCAAGAGAAAGACGAGATGCAA
GCCCTTGGGGAAGTAGAAGACGATTTTTCAGGTACGCTTTATAGAAAGAT
AGATAGAGTCAATATTTTAGGTTGATGGTTCAGTAATCTAGGTAAGTTTC
TATTTCCACGTAGTCGACGGCATCTTTTTTATTATGCTTTGTTTCTGCTC
CGTCGAAATAAGTTGTCTTGCTTGCATGTCACTACAACTCACACATTAAA
AATTGATCACAAACTCTCTAGTAACTGGAGGAGAAGAACAATCCACAATT
TGAGACGTCGATCGATCAGCAACTGGCGAAGACGAAGTATCTCAACATCC
CGATGGCGAAGACGGACAATTACTACTCAACGAAGACGCTGGAGACAAAC
TGCAAAGAAAATTGGAGCAGGAATCATAGTTGCTGCAGGTATAATAGTTA
ATAATTGGGAAAATGGGAAATTTACAGCTTTGCTAGAATCTGACATTAAA
GGAAGGAATAGTTCGATTTTGAAAAGGTTTGGAATGCTTTCTTCTTAACT
TTCACACTGACAAAATGTCATTGTGCTTCACAGCAACGATAAATTCTTTA
TCAAATGCCTGACATGACTTTTTATTAGAAACTGGTTCAAAAAGTtgctg
attatgacgtcataagttGCACCCTAGTGCGAGTTCTTGCTCCCTGGAAG
ATCGAATCAGTTAAAACGAGAAAAAGTTGGATTCAATAGATTTATATGTA
CCAAATCTGCTTCGCAGACCGACACACGGCAagctgaaaatataaaaatg
ccTGTACAGGTGGTATAGGTTAATAGATTTAAAAccttacttttttattt
tattctaggCGGAATCAAAAAGATTCGAAACAAGATTATCAAAGAATTAA
TAAAACCCAAATGTGCAGGATGTGCAGGGATTTGTGAGAAACCGGCGCCT
TCAGGTTGTCAATGTGTCCAAGATCAAGCGTGCATCAAAAGGATGTATGG
ATGACTTTTTATCAGTAAAGAATAGCCAACTGGTagcaaataattatttt
ttaattcagaGAATTTTGTATCTCCTTttattttatatgaaaaaataaaa
tttgaaggcAAAAATAATGCAACATTGTAAAATTCTTCCCTGAGGGAGGT
TCTAGGTTTGCGACGAGATGTTGGGGATGCCCGgcccaaaagttcaaaaa
tcgaCCTGGAATAGATTTAGAAATTAAGgccccttttttaaaatttcacg
aCCCTTTGAGTGACTTTTCTTCCCgatatttggccaaaattttcaaaatt
taatccaAACTGCGAGAAGTAATGGCTCTGTGCGggatttgattttttat
atcttCAAATTTTAGGATCCTTTTCAGTACTCAATTGTTATGGTCATGTA
AAAAACTTTTGAGGGTGCCAAAAAGGAGCTTTTATGGCTCGGGTACATCC
GAGAGTCATTTTGCCCCGCCCCCGAGATATAATCACACCAAAACACAATA
GCTTTATATTGAAATGGTGATGAAAAAAGAGATAATCAATTATCACGATG
GTTAATGCTTTGGGGATAAAACAACACATTAGTGAAAAATATGTTACTTC
CTTAACATTTTCTTGCAGAGTCGTTTCGGACAACTCTCTTACGGTATAAA
TTTAATAACGATGCGGGGCACTACacaatccaaatatggttaagaGATGA
GACACCCGGGGGAGGGCTAAAGTCATGCTTTGAAGAGATtccttttttta
atatttgatcGTGCTTTTAAGCCAGCTTTAACATcaaaaggacttttagt
gcgttcagctacagcttaaccggcgtgcgacgccgggtaccgggtAGATT
CGATTTAATTAAAGTaatatttccataattaatagtttagtaattactgt
tacagtatatggccccaaaAACGGAGACGGCTCCTAAAACGTAGGTCGTC
TTTAAAATGAGGATAACGATCAATTGGATCAATATTCcatgatttcaatt
tttagggTGGTTAAATCAATTTATGAATTTGAAACTTATAGAATGTATTG
GTTGAAACAGTCAAAATGTGAAGAGTCTACTCTTTTGTGCCTAATTGTAG
GGGGAGGGTTAAAAAGCAGGCGTTGGGTCATTATAAAATGCTATGGGGCG
ATTTTAATGAATTTCGTTGAAATGGGAGGACACAAAAACGCAAAAGATTA
ACAAATGCCTGAAACTAAAGTCTTAATTAAATCAATACAACATAATAGAA
ATAGAGTATAATCATTAGATTGGAATATGGTCATAAATGTGAGACATTGT
ActcaatttcaaagttttcaacaGTGACCAAGCTCTGTGACATTTCTTCA
CCTGTTCCCTTTCCAAAGAACTCCTCCAAAATGTTTGGGAAAAAAGTGAG
TGAAGTCAACTTATCTTTAATTTCAATCTGAGCATCTATAGAGTACACAA
GTTGACATTTTTTTCAAGCTCAAATTTAGAGGGCAATGATCACAACGAAC
ACTAGCTGCACCATTTTTAGGTTCTGGCAACTTTTTCTTGCAAACTGTGT
TACGACATTGGCGATATTCGTTGAGTTTGGTTCACATAATATCTGGGcaa
caaatttttgatatttcagTCTTCACTTTATCCCAAGTTATCTTAAGTTT
GGTGTCTGCCATTGTAACTTCAGTATCATAAAGTGTTTGTAATTTTGCTT
GTCCTTTGTGATGGATGAGAGTAAGCTTTAAAAAATTATAGGGTTTACTT
ACGTGTTCAAGTTCATTGATTAATTCGTCTCCCCATACTACAAGTGGCAA
GGAATTTTATTGAGCATCTGAAAATTTAGCATCTCTAACACTTTCCAGCT
TTTCTCTTTGGATGTCTTACCATGCTTTGTTTCTGCTGCAAAGGAAGTGT
TGTTATGTTGCTGTAATAATAAAGATTAATTATAAAGAATTTCGTTCGCG
CCACGCAGAAGAGTCGGTCACTTTCGATCACTCTTATTCCCTTGCGGCAC
GAACACACTGCGGCTGATCAAGGCCGCCTCAAGGGAACGCTTTACCTTTA
GCATTATATTACAGGCTGAATGTACACAACTTGTTAAGATATTATGGATC
ACAAAATTACCAAAACAAATTTGTGACAAGCTTGACATGCGGTGCTCAAA
TTAAAGTTTTGTGAGGGACATTAGTTGGATACTGGATGATGTGATATTTC
ACAATAGGCGCAAGAAAATTTTCTCACAGGGAAAAGGAAAACTGCATAAA
ATATAAGGACAAAATTATGATTCATATATTCCTTTCAAGTTTCAATTATT
TTCCGTATTTGCacctaaatttcaaaaaacctttttaattttatcCCTTC
TCCGAATGTCACTTCCTAGGGAGGGTACCCATCTTTCCATCTTTCCATAT
TCACACATCCACAAGCAGCATTAGGATAACGATCGCAAATTTCCCGAAAT
ATCACACCATTCTCTATCCCTTTGGGAGCAATCCTGAAGTGATGGTCCAT
GATgggatattttataaaaaaacaaattataggGTTTACGTGTTCAAGTT
CATTGATTAATTCGTCTCCCCATACTACAGGTGGCAAGGAGTTTTATTGA
GCATCTGAAAATTTAGCATCTCTAACACTTTTTGACTTAGTTGACACTTT
AATAGTAGTATGTAGTATATGTAGtatcttgaaaattctgaataTCTTTA
GTTTTAATGAGCCAATGATTATCTGTATTTTTCGTTTCTAAGGTTAGGAT
TTTCACAGATTTAAAACCGAAGTAATAATATATACCTTTTCAAATATCTC
AGCTTTTCTAACATTCTTCCCTGCTCCGAAGCTCGTATCACTACCTTTAC
ACATATCAATCACCTTTTtgtttatctggcacccagatggtgaaattttc
atccgacacactaaagctctgaaggtcgggaaaattttcaacatctggaa
ggtttacattacggaattttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNcagttcattcgtttttgaaatcgtaaaac
tttttgttcactgcacgcattctttgtttatgcttccttaataaaatctt
ttgttttaagggaagcctctacgggcgcgttcacactggaaagtttacct
aattaaatctatcaaagtttaacaaagagatttatgatggatgaatacac
tggtttattacagttctttgtaggtttacgagatctattataacacagta
attgattttgcttaaggcttctcattggttgattttttattgaaagtttc
gatttcacctgtgattggttgatattggtatccatacatcacttgaaatc
cgcaaacatatttgttctaatggttttactcattaactgcattcatccat
tcatcttacacatcaacaacaccgtttgcactatttctaattttttcctc
agttcattcgtttttgaaatcgtaaaactttttgttcactgcACGCATTC
TTNTAGAAGCAATGCTAACGTTTCAATTCTAGCAACCATTCTGCAGTTTG
AAGATGTTGTGTACAATACTATCAACTGTTTGCGATCTCCTCAAAAAGGA
AGCCTCACTCAAACACtcaaaaggggattccttttaGCTCCTCTATtcta
aaagatgaaatagcAATTAAGTCGTTGCATTTCTTAATTCCCTTATCAAT
TTAGTACTACTTaagccttaaacttaaactttcatgtCGGAACACGACCT
ATCTGTGGATCTTGTTATTCATGCTAATTACTTTGTTTAGCATTTTAGAG
CTGATGTCATCTCCCTTAGGGAATTTGCTCCACACGCCTTATATAATTAC
CATTATTGCTTAGGAGTGTGTTATATTTATCCATTAGCTGTATTACTAAA
ATAGTACTCATTGAATGCAGTCACTCTCGTGTCTGTTCTTAACAAGATGA
AGTTGATTTTTATACTTGGAGTATGTCTTCTCATGCAAGGTAAGTGAGCT
TTGAGCACATAGAGTTTTGCTTTGTGGTGGGCTAGTCGAAACTGTGGAGA
CAAGTTAAAAAGGTAGTATTAGGCACCCTGTCTCTAGGGTTTGTTCAAta
gtaataatgataataaaagCTAGCTGTTGAGTAAAAAAAGCTGCtcaatt
tacttttaaaatagtAACGATGTAGTGGAAGAAAAATGGTTTTCTTTTTC
TGGGCCGGGAAGTTTGgttgttttcaaaattgaacaaaatcttATACTTT
CCTTTCTCTACAGGTTGCCAACTGTCGAAAGCAACAGAATACGCTGCTTA
TGAAAATGAGGATCTGGATCACAATGGCATGGCAAGTCACCAAAACGAGA
ACGCAATGGATCACATAGATGATGCAATTGACAacaatgaagaagaagat
gatgatgattttgaagATCAAAATAATGGACCAGGTTTGTAAAATAATCC
ATCATTTATGTAATCATTTTATTAGCCAGTAAAGGAACTTAAAATTTCGC
GAACTTTTTCTGTAACCTGGTTTTTAGGGAAATATATAATCCCGCTCATT
TTAAAGACGAAAGCTATTTATCAATATCGAATTTTCAATAGAtttgtttc
ttttaaaataaaCTCTTGTGATCGTCCTCGAAAGTTTATTATTTTGGGaa
tattaaagattttttcaataatcaataatcaaaatattaaatattaaaat
aattcaaaaaaaaattgtacctgTTTGACGCTGAGTGACTGAGTGAgcct
ttttacgttttagtCGAAGACAAAGCAGACATGGGAAAAAAGGGAGAAGA
CATcattgatgaaaatgatgaagaagatgaagaagaagaagaacattCAA
GAGATGCAAACCCTTGGGAAAGTAGAAGACGTTCTTTCAGGTACGCttta
ttgaaaaatcaaaatataatagccgcattctttttcaccgtccaacacTT
TATTGAAAGATAGATAGAGTCAATATTTTAGGTTGATTGTTCAGTAATCT
AGCTAATTTTCCAGTAATCTAGGTAGCTTTCTATTTCCACGTAGTCGACg
gcgtttttttttgtttctgttcCGTCTGAATAAGTTGTCTTTCATGCTAG
ACTACAATCCACACATTAAAAGTTGATCACAAACTTTCTAGTAACTGGAG
GAGAAGAAGATACCACAGTTTGAGACGTCGATACCACAATTTGAGACGTC
GATCGAAAAGCAACTGGCGAAGGCGAAGTATCTCAACATCTCCATCGCGA
AGACGGACATTACGAAGACGGACATTACGAAGACGGACATTACGAAGACG
GACATTATGAAGACGGTGGAGACAAACTGCAAAGAAAATTGGAGCATGAA
TTATAGTTGCTGCAGGTATAATAGTTAAGAATTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007156-exon-sc0000074-1491911889:404992..405185 | TCONS_00007156-exon-sc0000074-1491911889:404992..405185 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1510915933:404992..405185 | TCONS_00007156-exon-sc0000074-1510915933:404992..405185 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1575043694:404992..405185 | TCONS_00007156-exon-sc0000074-1575043694:404992..405185 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1491911889:412855..413025 | TCONS_00007156-exon-sc0000074-1491911889:412855..413025 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1510915933:412855..413025 | TCONS_00007156-exon-sc0000074-1510915933:412855..413025 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1575043694:412855..413025 | TCONS_00007156-exon-sc0000074-1575043694:412855..413025 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1491911889:413355..413481 | TCONS_00007156-exon-sc0000074-1491911889:413355..413481 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1510915933:413355..413481 | TCONS_00007156-exon-sc0000074-1510915933:413355..413481 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1575043694:413355..413481 | TCONS_00007156-exon-sc0000074-1575043694:413355..413481 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1491911889:413733..413849 | TCONS_00007156-exon-sc0000074-1491911889:413733..413849 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1510915933:413733..413849 | TCONS_00007156-exon-sc0000074-1510915933:413733..413849 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1575043694:413733..413849 | TCONS_00007156-exon-sc0000074-1575043694:413733..413849 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1491911889:413880..413977 | TCONS_00007156-exon-sc0000074-1491911889:413880..413977 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1510915933:413880..413977 | TCONS_00007156-exon-sc0000074-1510915933:413880..413977 | Clytia hemisphaerica | exon |
TCONS_00007156-exon-sc0000074-1575043694:413880..413977 | TCONS_00007156-exon-sc0000074-1575043694:413880..413977 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000074 | supercontig | sc0000074:404992..413977 + |
Blast
The following BLAST results are available for this feature:
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