TCONS_00007162 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007162
Unique NameTCONS_00007162
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007162 ID=TCONS_00007162|Name=TCONS_00007162|organism=Clytia hemisphaerica|type=transcript|length=656bp
GGAGTGACTACTGCCGCCCCTGGTGTAACCACTGCTGCCCCAGCAACCAC
CACTACAGTTGCTCCAACTACAACAACTGAATTCACATTGCCGCCAACTG
AACCAGGAAGTGATAGCTCAACTTTGGTCGatCAAGATTTGACAAGCACG
TCGAGCAGTGTTCATACCAGCAACGGTTTTTCTGTCTCCTCTGGATCCAA
ACGAAGAAGACGAAGAAGAGATATTATGACTTCGACTGCTCCACCAGCTA
CCACCCAAACTACCACTTATGCACCTACTACTACACCCTTCCCTGCCCCG
TCTATTTTCCTTCGACTTGGTGGTGCCGCCACTGGTGACGTAAGCACTAC
TACCATTCCAAGAAACATTGTGGAATCGAGCTACAATTACCAATGCAATG
GTATCTTCGGAAACATCGACTGGGCAGCACTTTGTCAATCTCAGAAATAT
TGTTTAAGTTTCGTTGTTCGCCGATCATCACACATTGATTCTCCAACGAC
CACTATTGCAACTCAAACTTTCACTCACTACCAAGGCGTCTCCAAATCAT
ACACTTCCACTGATTTCCCAAAAAACCAATGGCTTCGTATCACTCAAGAC
ATCAATGGCAAATGTGACCAATTAACCGGAAAACTTGAGGTGTCGACAGC
CCCGAC
Run BLAST on NCBI

protein sequence of TCONS_00007162-protein

>TCONS_00007162-protein ID=TCONS_00007162-protein|Name=TCONS_00007162-protein|organism=Clytia hemisphaerica|type=polypeptide|length=218bp
GVTTAAPGVTTAAPATTTTVAPTTTTEFTLPPTEPGSDSSTLVDQDLTST
SSSVHTSNGFSVSSGSKRRRRRRDIMTSTAPPATTQTTTYAPTTTPFPAP
SIFLRLGGAATGDVSTTTIPRNIVESSYNYQCNGIFGNIDWAALCQSQKY
CLSFVVRRSSHIDSPTTTIATQTFTHYQGVSKSYTSTDFPKNQWLRITQD
INGKCDQLTGKLEVSTAP
Run BLAST on NCBI

transcript from alignment at sc0000074:666080..668165+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007162 ID=TCONS_00007162|Name=TCONS_00007162|organism=Clytia hemisphaerica|type=transcript|length=2086bp|location=Sequence derived from alignment at sc0000074:666080..668165+ (Clytia hemisphaerica)
GGAGTGACTACTGCCGCCCCTGGTGTAACCACTGCTGCCCCAGCAACCAC
CACTACAGTTGCTCCAACTACAACAACTGAATTCACATTGCCGCCAACTG
AACCAGGAAGTGATAGCTCAACTTTGGTCGGTAAGTTTTAGGAACTACCG
ATTCTTTTCTTTATCTTCCATAAGATGCCGATACATTTATTGAATTAATA
ATTGTTTCTCTGATTGCTGATATTTACATGAGAGTGAAAATTATCCTCAC
AcctattttagattttttactcTGAGATTTGCTAAATAACTTTTTAATAT
CATCTTTTCGACCACTTTATAGTTCCCCatgtttgataaattttgaaaaa
atattttctaaggttttgtcGTTTTCCTATTTCATGGGTGTTGACCAtta
aaaatttcttataaaagctaCACTTTTATTTCAGAGGAATGctcacccgg
gggggggtactgtGTTTGTactggcttttaaaattgcaccttaacagtgc
agcaaaaattagtgaaaatcatacccttaacagtgcattttcccccaaat
tttcgatccctttcgtgcaaaaaaatggtcaaaattttagcatttttggt
caaaatatctaaatttttcaaaaattttctgaaatttctacccttacagt
gcatctctagtttttccgacccttacagtgcattttaaacatattggaaa
aggtacccttaggacctgCACAttcccgtcggtccttttgcccagctgcc
gcCCCCCCCCGGTATGCTCATCAAAATAAAACTACCTTGtatcttatttt
ttggcaaaaaacgtCGACGAATGTTCTTCTATCTACCTATAAGATGTACT
CAAAAGGTTCAGActttatcatttattttttcagatCAAGATTTGACAAG
CACGTCGAGCAGTGTTCATACCAGCAACGGTTTTTCTGTCTCCTCTGGAT
CCAAACGAAGAAGACGAAGAAGTAAGACATAataattcttttctttcttt
atttcatCACGCATTTCTTAATACATACCTATTcttttttcaccgttcaa
caaaTTAGAACATACCTGTATTAATTATCCTTTGTACACCGAATTTATGC
TTTTTCAGGTGCCCTTgtgttttatttgaaattcatattcttataatttt
ttcgTTTTCAGGAGATATTATGACTTCGACTGCTCCACCAGCTACCACCC
AAACTACCACTTATGCACCTACTACTACACCCTTCCCTGCCCCGTCTATT
TTCCTTCGACTTGGTGGTGCCGCCACTGGTGACGTAAGCACTACTACCAT
TCCAAGAAACATTGTGGAATCGAGCTACAATTACCAATGCAATGGTATCT
TCGGAAACATCGACTGGGCAGCACTTTGTCAATCTCAGAAATATTGTTTA
AGTTTCGTTGTTCGCCGATCATCACACATTGATTCTCCAACGACCACTAT
TGCAACTCAAACTTTCACTCACTACCAAGGCGTCTCCAAATCATACACTT
CCACTGATTTCCCAAAAAACCAATGGCTTCGTATCACTCAAGACATCAAT
GGCAAATGTGACCAATTAACCGTGAGTACTAGATTACAattcattttata
agaatcttGAAACGCTTATATCCATTGCCAAGGTTCCCGTAAATTATGCA
AAATAGGGTGAAGAAGCTAATGcacgtttttcataagaacatcccaaaAC
TTTGAAgccttttgatgttcttaactttattagttttaagcctaaaatgc
tcttaacattttcttattttcaccattttgttagtatttttgtccatttt
tctgcGACATAGAGTGTTATACAGTTTGCAAAGCGTTATAATGGTTTTaa
tttgttcttgatattttggccattaaaGCAGTTTTATAAAgagttttctg
acttgaaaacaaaagaatttaaatccccgttcataaaaaatatgggaata
tgaacccccatcgagtttcagtcagTTACTTTTCCCACTGACTGAAGAAA
TGTTACgaagtctgtgagaaggggatgtttaTAAATTTCCGCTAAATCTT
TTTTCAGGGAAAACTTGAGGTGTCGACAGCCCCGAC

Coding sequence (CDS) from alignment at sc0000074:666080..668165+

>TCONS_00007162 ID=TCONS_00007162|Name=TCONS_00007162|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0000074:666080..668165+ (Clytia hemisphaerica)
GGAGTGACTACTGCCGCCCCTGGTGTAACCACTGCTGCCCCAGCAACCAC
CACTACAGTTGCTCCAACTACAACAACTGAATTCACATTGCCGCCAACTG
AACCAGGAAGTGATAGCTCAACTTTGGTCGatCAAGATTTGACAAGCACG
TCGAGCAGTGTTCATACCAGCAACGGTTTTTCTGTCTCCTCTGGATCCAA
ACGAAGAAGACGAAGAAGAGATATTATGACTTCGACTGCTCCACCAGCTA
CCACCCAAACTACCACTTATGCACCTACTACTACACCCTTCCCTGCCCCG
TCTATTTTCCTTCGACTTGGTGGTGCCGCCACTGGTGACGTAAGCACTAC
TACCATTCCAAGAAACATTGTGGAATCGAGCTACAATTACCAATGCAATG
GTATCTTCGGAAACATCGACTGGGCAGCACTTTGTCAATCTCAGAAATAT
TGTTTAAGTTTCGTTGTTCGCCGATCATCACACATTGATTCTCCAACGAC
CACTATTGCAACTCAAACTTTCACTCACTACCAAGGCGTCTCCAAATCAT
ACACTTCCACTGATTTCCCAAAAAACCAATGGCTTCGTATCACTCAAGAC
ATCAATGGCAAATGTGACCAATTAACCGGAAAACTTGAGGTGTCGACAGC
CCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004017XLOC_004017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007162-exon-sc0000074-1491911889:666080..666209TCONS_00007162-exon-sc0000074-1491911889:666080..666209Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1510915933:666080..666209TCONS_00007162-exon-sc0000074-1510915933:666080..666209Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1575043694:666080..666209TCONS_00007162-exon-sc0000074-1575043694:666080..666209Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1491911889:666964..667050TCONS_00007162-exon-sc0000074-1491911889:666964..667050Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1510915933:666964..667050TCONS_00007162-exon-sc0000074-1510915933:666964..667050Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1575043694:666964..667050TCONS_00007162-exon-sc0000074-1575043694:666964..667050Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1491911889:667241..667650TCONS_00007162-exon-sc0000074-1491911889:667241..667650Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1510915933:667241..667650TCONS_00007162-exon-sc0000074-1510915933:667241..667650Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1575043694:667241..667650TCONS_00007162-exon-sc0000074-1575043694:667241..667650Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1491911889:668137..668165TCONS_00007162-exon-sc0000074-1491911889:668137..668165Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1510915933:668137..668165TCONS_00007162-exon-sc0000074-1510915933:668137..668165Clytia hemisphaericaexon
TCONS_00007162-exon-sc0000074-1575043694:668137..668165TCONS_00007162-exon-sc0000074-1575043694:668137..668165Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007162-proteinTCONS_00007162-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:666080..668165 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.44015	0.725681	0	0.589672	4.60752	3.7696	6.7442	7.55408	1.30317	2.09046	0.989962	0.761171	13.0726	8.26476	0.22534	0.231504	0.152966	0.284847	1.6265	1.37824	1.85335	1.18093	0.387772	0.780236	0.366435	0.228156	0	0.116146	0.250932	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007162 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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