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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007163 ID=TCONS_00007163|Name=TCONS_00007163|organism=Clytia hemisphaerica|type=transcript|length=2189bp
ctcaagccttataaacctttcGATTTCATTCCCCATAAAGTTCTCCAtct
aatgaggggtcaacgacctttcaactcttcttcaaactcgagatattgca
tgttttctattttgatgacgtcgtcagctgaaaatggctaaaaattcagc
caaatttaaaagtcctactcaagccttataaaccttctcatctcattccc
cataaaattcccgatagaatgaggggtcaacgaNTGTAAATAATTTTAAG
TTCTGTTCAATTTAGTTATTATTCATTGTATCGAAATATTAACAAACCTG
AAAGTAAAATATAATTCTAAGATATAAACACAAAACGTCATAGATAAATT
TTACGTAGTTGAGAAGGAGCAACAATATCATTACATTTGGGACAAAGTTT
TTTAGAACCTAAAACCCGAAGCCAACATTCACTACAACACGTGTGCCAAC
AAGAGATTGATACTGCAGGATTAACATAGGGTCCCATACAAATTGGACAC
TTACTAAtgtctttttctaatttttcttctgttttgtttatatatttaga
TAATAATCCAACGAGTTTATTTGAGTCATTCCCTGCTTGAGATAAGATAT
TTCTCACTTGTTTCTCAACAGTTTGATTTACGTTTATCTCAGAATTCTCT
TTATCACTTTCTTGTTTGTTTGTAGTTAATGATCCATTCTCACCCTTTGA
AGAACAAGCTCCATTGCTAACTGCATCACGTAAAATTACTGCTGAAAGAA
GTTCCTCGTCAGACCCTTCAGTTGTTACTGGAACAATAACATCATTTTCA
GTGAATCTAAATATTTGAATGTCAAGgacaaaacatttttcaaaacagaT
CAAACTAAAGCTACAAAGAGTTTCAAAAGACTTGAGATACAGACTCTTGA
TGAATTTGATTAAAGGTaatgacacccccttctcacagacctagtGGGAC
CCCTTCCCGCTGGAatagccaaaatatcgtcccagtggaaaattatactc
ttatTTTTGTCCCTGTTGAAAATAATAAGCAAATTTATAAGATATACCTG
GATATACagtaagcaaatcctcactgcaaaatatcgtACCTTTAAtatta
cccccactggctgaaaagatTATTCAgtcaggtctgtgagaaggggcgTG
TAATGGTTTGCAAAATCGGTTTGTTAGACCTGATAATATTTTACTTCTCT
TTCACCTAAGATATCAAATATTGTACTAATGCCTGGTAGAAAAAGATACT
GTTGCTTTCCAAACTGAGCATTTTCTTCATCACCATCAATATCAAGGTCC
CCATCATCATCTTCCATTACCAGCCGAGTTAGATTCCCTTCTCTTCggaa
atgtgcgttatccatcCAATTCTCACCTAAGTCAACATCTTCCTCTTCAT
CATCTGGCTCCTCATCACTACTACTGAAAACCTCAAATTGGTAATCATGT
TTAGCAAAACACTTCGATAGATGTCTATTACTGTTACTTGTTTCAAGAAA
TTCATTACACACCGCACAAGACACTACTTCATAAACAGATGAGCTCTCTG
CTATTGTATTTTGTGAGGATGACGTGGAATGTGTTGTCTGATTGTTGTTA
CGTGCTTGATTACGTTTCATAGACATTAAAAACATGTTAGCATATCTCTC
ATATCTTCTTTTACGAACATTATTCAAATCTTTAGTCCTGTCTTCTAGAC
ATTTTGCTGGCTCCTCAATTTCAGTATCACTTTCTTCGTTACTTTGTTGC
CGCTGCCACTGTAAGCGAGTCATATATTGTTTCTTCTTAATGTCAACTCC
AACAAAGGGTTCTTTGACTTTTTCTAGCTCTTGAATATAGTGCTGATGAA
ATTTCTCATCTCCTCTAACAGTAACAGTACAAACAGGACAGATAACACAA
GTTGTAGTTCCAGTTGATTTGCGCTTTTTACGATCATCTGCCTCCTGCCT
ACAGATAATGGTATCTGCTGTCTTATGAGgttttcttttcaatgttttaG
GTTCCAAATCTTGCTGTGTTTTTCTTCGTGTCGAaggcatttttattttt
atcttgtGATTAGTCcttcaaagatttcaaaatgttcAATTAAGTACTGC
TTATGGAATGAAAAGAGAACATTACTTTAATGTTAGCAAATTTTACAata
gggaccattcaaaaaggaTTTACACTCTGAGGGGGGAGG Run BLAST on NCBI transcript from alignment at sc0000074:696596..698843+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007163 ID=TCONS_00007163|Name=TCONS_00007163|organism=Clytia hemisphaerica|type=transcript|length=2248bp|location=Sequence derived from alignment at sc0000074:696596..698843+ (Clytia hemisphaerica)
ctcaagccttataaacctttcGATTTCATTCCCCATAAAGTTCTCCAtct
aatgaggggtcaacgacctttcaactcttcttcaaactcgagatattgca
tgttttctattttgatgacgtcgtcagctgaaaatggctaaaaattcagc
caaatttaaaagtcctactcaagccttataaaccttctcatctcattccc
cataaaattcccgatagaatgaggggtcaacgaNTGTAAATAATTTTAAG
TTCTGTTCAATTTAGTTATTATTCATTGTATCGAAATATTAACAAACCTG
AAAGTAAAATATAATTCTAAGATATAAACACAAAACGTCATAGATAAATT
TTACGTAGTTGAGAAGGAGCAACAATATCATTACATTTGGGACAAAGTTT
TTTAGAACCTAAAACCCGAAGCCAACATTCACTACAACACGTGTGCCAAC
AAGAGATTGATACTGCAGGATTAACATAGGGTCCCATACAAATTGGACAC
TTACTAAtgtctttttctaatttttcttctgttttgtttatatatttaga
TAATAATCCAACGAGTTTATTTGAGTCATTCCCTGCTTGAGATAAGATAT
TTCTCACTTGTTTCTCAACAGTTTGATTTACGTTTATCTCAGAATTCTCT
TTATCACTTTCTTGTTTGTTTGTAGTTAATGATCCATTCTCACCCTTTGA
AGAACAAGCTCCATTGCTAACTGCATCACGTAAAATTACTGCTGAAAGAA
GTTCCTCGTCAGACCCTTCAGTTGTTACTGGAACAATAACATCATTTTCA
GTGAATCTAAATATTTGAATGTCAAGgacaaaacatttttcaaaacagaT
CAAACTAAAGCTACAAAGAGTTTCAAAAGACTTGAGATACAGACTCTTGA
TGAATTTGATTAAAGGTaatgacacccccttctcacagacctagtGGGAC
CCCTTCCCGCTGGAatagccaaaatatcgtcccagtggaaaattatactc
ttatTTTTGTCCCTGTTGAAAATAATAAGCAAATTTATAAGATATACCTG
GATATACagtaagcaaatcctcactgcaaaatatcgtACCTTTAAtatta
cccccactggctgaaaagatTATTCAgtcaggtctgtgagaaggggcgTG
TAATGGTTTGCAAAATCGGTTTGTTAGACCTGATAATATTTTACTTCTCT
TTCACCTAAGATATCAAATATTGTACTAATGCCTGGTAGAAAAAGATACT
GTTGCTTTCCAAACTGAGCATTTTCTTCATCACCATCAATATCAAGGTCC
CCATCATCATCTTCCATTACCAGCCGAGTTAGATTCCCTTCTCTTCggaa
atgtgcgttatccatcCAATTCTCACCTAAGTCAACATCTTCCTCTTCAT
CATCTGGCTCCTCATCACTACTACTGAAAACCTCAAATTGGTAATCATGT
TTAGCAAAACACTTCGATAGATGTCTATTACTGTTACTTGTTTCAAGAAA
TTCATTACACACCGCACAAGACACTACTTCATAAACAGATGAGCTCTCTG
CTATTGTATTTTGTGAGGATGACGTGGAATGTGTTGTCTGATTGTTGTTA
CGTGCTTGATTACGTTTCATAGACNTGTGGAATGTGTTGTCTGATTGTGA
TTGTTGTTACGTGCTTGATTACGTTTCATAGACATTAAAAACATGTTAGC
ATATCTCTCATATCTTCTTTTACGAACATTATTCAAATCTTTAGTCCTGT
CTTCTAGACATTTTGCTGGCTCCTCAATTTCAGTATCACTTTCTTCGTTA
CTTTGTTGCCGCTGCCACTGTAAGCGAGTCATATATTGTTTCTTCTTAAT
GTCAACTCCAACAAAGGGTTCTTTGACTTTTTCTAGCTCTTGAATATAGT
GCTGATGAAATTTCTCATCTCCTCTAACAGTAACAGTACAAACAGGACAG
ATAACACAAGTTGTAGTTCCAGTTGATTTGCGCTTTTTACGATCATCTGC
CTCCTGCCTACAGATAATGGTATCTGCTGTCTTATGAGgttttcttttca
atgttttaGGTTCCAAATCTTGCTGTGTTTTTCTTCGTGTCGAaggcatt
tttatttttatcttgtGATTAGTCcttcaaagatttcaaaatgttcAATT
AAGTACTGCTTATGGAATGAAAAGAGAACATTACTTTAATGTTAGCAAAT
TTTACAatagggaccattcaaaaaggaTTTACACTCTGAGGGGGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007163-exon-sc0000074-1491911889:696596..698219 | TCONS_00007163-exon-sc0000074-1491911889:696596..698219 | Clytia hemisphaerica | exon |
| TCONS_00007163-exon-sc0000074-1510915933:696596..698219 | TCONS_00007163-exon-sc0000074-1510915933:696596..698219 | Clytia hemisphaerica | exon |
| TCONS_00007163-exon-sc0000074-1575043694:696596..698219 | TCONS_00007163-exon-sc0000074-1575043694:696596..698219 | Clytia hemisphaerica | exon |
| TCONS_00007163-exon-sc0000074-1491911889:698279..698843 | TCONS_00007163-exon-sc0000074-1491911889:698279..698843 | Clytia hemisphaerica | exon |
| TCONS_00007163-exon-sc0000074-1510915933:698279..698843 | TCONS_00007163-exon-sc0000074-1510915933:698279..698843 | Clytia hemisphaerica | exon |
| TCONS_00007163-exon-sc0000074-1575043694:698279..698843 | TCONS_00007163-exon-sc0000074-1575043694:698279..698843 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:696596..698843 + |
Blast
BLAST of TCONS_00007163 vs. Swiss-Prot (Human)
Match: RN220 (E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens GN=RNF220 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.068e-19 Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = -2
Query: 341 RFTENDVIVPVTTEGSDEELLSAVILRDAVSNGACSSKGENGSLT--TNKQESDKENSEINVNQTVEKQVRNILSQAGNDSNKLVGL--LSKYINKTEEKLEK-DISKCPICMGPYVNPAVSISCWHTCCSECWLRVLGSKKLCPKCNDIVAPSQLRKIYL 808
++TE DVI P T E E LR AV NG S + + + N E + + ++K +N + + + + L + + E +L + D KC ICM Y P SI CWH C ECWLR LG+KKLCP+CN I AP LR+IYL
Sbjct: 408 QYTEADVI-PCTGE-EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL 566
The following BLAST results are available for this feature:
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