TCONS_00007200 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007200
Unique NameTCONS_00007200
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007200 ID=TCONS_00007200|Name=TCONS_00007200|organism=Clytia hemisphaerica|type=transcript|length=3277bp
GGCGGTAAAGTAAGGCTTCCGTTTCTCCGATCTTTGCAATCCGATTGgat
agattttttcaaaatattgggATGTGGCTGGGCGGGGGCGTTCGTAAAAG
CGAAAGGAGAATCTCATTCAGTTCGGGTTTTGTTTTGGCTGGTGAGAttc
atgaagaagaaaaaaatttgagagatttttctttataatattttttatgt
tttgtccTGGTTAGAATTCTATACTTGAAGCAAGATGAACTCTCAACAAC
CATGTTGCAGTGTTTGCAATGAAATCTTCGATGATGAAGAGAAAATGGTG
AACTCAAATGGGCAGCTTTATCATGAAAACTGTTTTGTttgtGCTCAATG
TTTTCGACCCTTTGAGGATGGTGTTTTTTATGAATTTGATGGACGTCAAT
ATTGTGAATATGACTTTCAACAACTTTATGCGCCATGTTGTCGAGGGTGT
GGGGAATACATCATTGGGCGGGTCATCAAAGCTATGGGTGGAAACTGGCA
TCCTGAATGTTTCCGATGTGAAATTTGTGATGATATTTTAGCTGATGCTG
GTTTCGTCAAAAATGCTGGaagAGCATTGTGCAAGCGTTGTAACGCCAAC
GAGAAGTCGAAAGGTGGTCGATTCATGTGCCACAAATGTCACACATATAT
TGAAGAAGGGAAACACATCATTTATATGGGTGATCCTGTCCATCCATGGC
ATTACAATTGTTATGAGTGTGGTCGTGAACTTGACGAGACTTGTCGTAAA
CGTAACAATGAATTGTATTGTCTTCGATGCCACGATAAATTGGGAATACC
CATCTGTGGCGCTTgcaaGAAGCCGATCGAAGACGAACGTGTCGTGAACG
CCATCGGCAAACAGTGGCACGTCGACCATTTCTGTTGTGCGAAATGCGAG
AAACCATTTTACGGGAATCGTCATTACGAGAAGAACGGACTTGCGTATTG
TGAGACACATTTCAACCAACTCTTTGGTGATATATGCTTCATTTGTAACA
GGGCCATAACTAGGGACGttgtGACTGCCTTGAATAAATGTTTTTGCGTA
CATCACTTTATTTGTACTGGCTGTAATACCAAGCTCACTCTAAAgagcaa
GTTCCATGAGATTGACATGAAACCATTATGTTTACGTTGTCACGAGCGAC
TACCTAAAGAATTACGTAAGCGTCTTCGAAAAGCTGAGTCAGCTAATCGT
TaaactgacgtcattttttGGATGGCTGCAAGATTTTCACTGAgagaaat
catcaaaaaaacACTGACTGGTAAACAGTCNGCAAGATTTTCACTGAGAG
AAATCATCAACAAAAACACTGACTGGTAAACAGTCTTAGGGTAGATAGTT
AGggtttaaatgtttaaaatctaGAATTGGCTTTTCGATTTCCATGGAGA
TGAGATTCttttgtacatgtttttttgatGAGCAACTCGATTTTTAGCTT
CAACCCTAAGGCTGCATTATGGCTCAATCACTTAGAAATTGCCAGCCCTA
ATATTATACCACGTTTATGTTATGTTATctcaaaagctttttcttcaaga
gagatttggaaaatatttggCTGACTTCGGGGCTCGAGCTTGAGGAACAT
GGTTGCTTATGTAAAATAAATGTGtacatacactttttttgagaacaata
aggctcaaaattgccaaaaaataagaacaatttaagaacaatgctgagcc
tgggattgctaaatttcaaataatttggTGGGCAAACAAGTAAATAATGG
GTATAAAGCCAAAATAACTCAATTTCAAcctttgaattttaattcaattt
aatttcaatacAGAAGCAACAACTAAAGTCggaaattgaaattccaattt
tattgaatttacaTTTTTACTCTGTGATAGAGaatacgtttgtttttttg
caagTCGAAAAAAATacccaaatatttttattccgtgtactaaaattttc
atttatttgttttgtatgtttgtttaaaatatagcatattttatcttctt
ttttttcattagatGTGCTCTGGTTTTAGAAAACGCTTAATTTTTGAAGA
TCGGttcaaaattctgaaaaaatttaattaaaataattttccctGAAACG
TTTTTCTGTACAAAGAATCGAGTGAATTAAAccagatttttttaattttt
attatacTAAGTTTTTAAAACTATTTCTTTGAGCCCATTTAATATTATAT
GATGATGGCATACACCTGTCTGAATAACCCCCATGTCAGTTTGTCTTCTG
TATGTCTATGTTTGAGGCTCCCATTCCCCAATAACTTTCTGTAAGAACCT
CTGACGTTGGAAAGagcatttgaaattttaaagtggAACAACCTGACACA
GACTTGTCAGTTGACATAACTACTTGGGAAATCAAGTTTTTccatgtaca
cgtttttttagtaagaacaaactatataagaactaggcttcgatggccta
aatgttaagaacaagttacgaACAGTTTAAGgttttgcggactctaaaat
accctattccttttgaaaatggacaaaaatgctcaaaaaatggtagaaat
aagaacatgctaagaacatttttaggcttacaactaaaaaagttaagaac
atctgaaggcttcaaaaattttggatgttcttattaaaaaaacgtgtata
agaaCAGGTACACTTAAAATCTCAGACTATCTGACTATCCTTTAATTATT
CAACTTTTGGTGAAAGGCgtctttaattttcttaaagtgattatcagatt
atttttgatatttggcttgGAGATACCTTTTATGGTCCAGAGAGACACCT
CTAAATTTTTTGACCCAATTTTTGAGATATAaaagctgagatatttgact
ttgaaatctctaaaaatgagtCTTTGCACACTCTTTacgttgaatttcta
ttgttttcaagtaaaaatttaaaaattcaaagtcgaatatctcagctttg
gaaaataattgggtcaaaaactttggaggtgtttcttaggaccataaaag
gtatctctaagccaaatatcaaaaatcatctgataatgCCTCTAAAATTT
AACAGCAAATTAATCATTgtgtatagtggtcattgaatAGCTGTCTTCCA
AATGTATAGTCCGCCAATATCTAAAATACTTTAATTTTTGTATCCACTTT
TTTATTGCTAtgtcttgaatatgaaatatATTTAACTCAAATataatcta
aattttttttttacataaattgTCCTTATATTTTACTGAGAAggtgaaat
tattttgataatttcaaatCACTAGCA
Run BLAST on NCBI

protein sequence of TCONS_00007200-protein

>TCONS_00007200-protein ID=TCONS_00007200-protein|Name=TCONS_00007200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MNSQQPCCSVCNEIFDDEEKMVNSNGQLYHENCFVCAQCFRPFEDGVFYE
FDGRQYCEYDFQQLYAPCCRGCGEYIIGRVIKAMGGNWHPECFRCEICDD
ILADAGFVKNAGRALCKRCNANEKSKGGRFMCHKCHTYIEEGKHIIYMGD
PVHPWHYNCYECGRELDETCRKRNNELYCLRCHDKLGIPICGACKKPIED
ERVVNAIGKQWHVDHFCCAKCEKPFYGNRHYEKNGLAYCETHFNQLFGDI
CFICNRAITRDVVTALNKCFCVHHFICTGCNTKLTLKSKFHEIDMKPLCL
RCHERLPKELRKRLRKAESANR
Run BLAST on NCBI

transcript from alignment at sc0000074:532143..544161-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007200 ID=TCONS_00007200|Name=TCONS_00007200|organism=Clytia hemisphaerica|type=transcript|length=12019bp|location=Sequence derived from alignment at sc0000074:532143..544161- (Clytia hemisphaerica)
GGCGGTAAAGTAAGGCTTCCGTTTCTCCGATCTTTGCAATCCGATTGGAT
AGATTTTTTCAAAATATTGGGATGTGGCTGGGCGGGGGCGTTCGTAAAAG
CGAAAGGAGAATCTCATTCAGTTCGGGTTTTGTTTTGGCTGGTGAGATTC
ATGAAGAAGAAAAAAATTTGAGAGATTTTTCTTTATAATATTTTTTATGT
TTTGTCCTGGTTAGAATTCTATACTTGAAGCAAGATGAACTCTCAACAAC
CATGTTGCAGTGTTTGCAATGAAATCTTCGATGATGAAGAGAAAATGGTG
AACTCAAATGGGCAGCTTTATCATGAAAACTGTTTTGTGTAAGAATCTTT
TTTTATTTAATAATTTTCCTCTGTTTTGCATCTACACATTTAAATTTAAA
GCTGATCTATTATACTTCTGATATTTCAAAGCTAATACTATCAATGAATT
TCTTATAAGTACGAGTGTCTTTCGATTAAGGTGAGGGTGTGTGCATCTGA
TAGCGTACGTCGTCGCTTAGCCTCAGGTGTCACGTCACTTGTTTGACAGC
CCAATTGTTCTACATTTGGAAGAAATTGTCAAGCAACTAAAATGTCAAAC
AAGTGTCAACTCAGTTGACAACCCATTTGTTCAACATTTATTTGTTTAAC
TTGCTGCTTTTTAAAAGTGGATAAATTTCTTGCGAGCAGTCTGGTGACTG
GTATGGTAAGATATATAACACCAATTATTGTAGGCCATGGCCAGTGCCAC
CAAAACGTCCGTTTTTCAAAATGTCCGTGACCAAGCTTTTAGAATTGATT
TTGGTCAATTTGAGGGTGCTGGTTTGGAATTTGAATGAATACTGTACCAA
GCTTGAAAACCCGCAGTTTTTGCGTAATTTGCAATTTTTTGCCTTTTTAA
GCATAATTGTAAGCCCTAAAAATTCATGATGGTTTTTCATGGGGTCTTCA
AAATCAAAAAGGACCTATACCGCGTGATAGAGCTCTTCAAACTGAGCAAA
AAAATGTATTATATCAAAGTCTCAACTTTTCTAGATCAAAAGTTATGGGC
GTTTTTGTGGTAAAAAAGTGCTATAATTTTGCATAAATTATGCAGATTGT
GGGGAAATTCCCTGTTTCAATCAATTTTTGACCATAAAATCGTCTATAAC
TTTTGATCTAGAACAGTTGATACTTTGATATGATACATTTGGCCACCATT
TCACTGAACCGCCAAAGTCATTTGATTTGAGTTACTGAACGACGTATTAA
AAAATATACAATTGCTCTTTCGCAATGAGTAGGCTTTTAAATCGAAACAT
GAAAAAAAATCCGTAGTGGAACACACGCGAGTGTCTATGCACTCTAAGAG
GAACGAAGAAGTATGATTGATAAACTTGGTGGAGTTATCAAAACAAATTT
GTTGTCAAAGAGATTAACAGTAAGTGAAAATACAGCTGTCAGAGCAATTA
GTGAAGCCACTCGGTGATGGCTTCTTCATAAAAAGGCAAAAGACACAAAT
ATATTCAACTTTTAATGTTCTTTCTATTTAATATATAACACCATAAATTT
TTATCCAAAAAAGGTATCACTTTTCCTAAAAACGCATATGTTTACCTCCC
AATACACAACAGTTGAGGGCGTCACATTTTCCCAGGCCATTCCTGAGAAT
TTGGAATTACGGGAAAGGTGTATTACAATGTTGAGCAACTAAGCTGTCAA
ACAAGTGAACAATATCCAAAGAAAGAAAGAAAACATCTTGAAAGATTTGA
GTTCATAGATTTATTAAAGTTTGTTTGCTTTAAGTGTGCATTGATCTTTG
TTTTGCTTGTCATTTTTCAATGATCATTTTTCAAATCAAGAATTTTTACA
TACAGAAATGTATTATTTTATAATCCAATAGAACTAGAACTAAAAATGAA
TGCTTCAATTCTAACATAACATAGACCGTTGAAAAGATAATTTAGAGCAC
TGTAATTTTCGATATAATGGTTCAAAATAATGTAGAAAATGGAAATGAAA
AATGAAGAAGAAAACTGAATTTTTTATCCTTTGGTGCTAAAAACTTCATC
TTTTGGTATAGAGGTACTTTGAAGCCTCCTGATTTTGGATATACAATTAT
TTTTCACATAGAATTATTGTAAAAAAAAGTTCTAGACTTTATTGAAAAAT
TATGTTCAATTTTATACATGATAATTGCTGTAAATTATTGTTGTTATTAT
TTTTATTTTTCAGTTGTGCTCAATGTTTTCGACCCTTTGAGGATGGTGTT
TTTTATGAAGTAAGTTTTGTTGTTGTTGTTTTGTTGTTTCTAGTATCTTT
TTAAAAACCAATCTTTATTCATGATATTGATCACAAGTTGATATTTTATA
CAGAAAGTATCAATGTTGTAAGTAAAGTCGAAACAGCCTAGAATAGGTTG
GCCAGTTTGCGGATGGGGTCATTTGGCGGACAAGCAACTTTAAACCCAGA
GAAAAATAAAAATAAAAGCTTTAAAGAAAAATCCTTTTGTTCCTTTGTAA
AAATATTGCATTAAAGCAACCTGTCAAATTTGAAAAATACACATTTTCGT
AGGGGTGGTTGAAAAAACGTCTGAAAGTTTGTCTACCAACCAGCCAAGAG
AAATATCGACTTTTTAACATGATCATTTGAACAGGATCCTTTTCTTAAAA
CCGGTTCCGTCATATATGAAAAACATCAAACTAAGCCACAGAAATGATAT
AATAAGTTTTATCTAAAGTTTTATAATTTTTGAGAAATCGACCCGTTTAC
CAAACCGTTCGGCAACCGGCCTAATGCCTCTGATTACAACTTTGATATTG
GGGTAGGCTTGGGTAGGGGTACCTTTTTAAAGTTTGACATTTTACTCCTA
AATTGTAAATTTTTACAGATATCTGATCTTAAAATTCCTGAGGGAAATAC
TTAGTATTCTGGTGAAATACTTCTCAAAAAATGAAATTTATTAGGGATGT
TTATCCCATCAAGAGTCTTTCATGGACTTTCTGGGGGTAACTTTGAAAGT
CAAGATGGTTCTAGGAGAGGTTTGATAGAAAATATTTTCAAAGGAGGGAA
ATTGAAACCCCCTTCTCTCTATAATGAAATAAAGTTTGAAATGTGGTGCA
TCTATTGATGAATCTTGAAGAAGTCCAACCCTATTTTCATAAAAACGTTT
GTTAGAGAAAATAAATCAACTTTCTCAAACCTTATATCTTTATTCTTTAT
TATTGTATGGTAATACTAAGCCAGAAGTTCAAGTTATCAAACAAATCCGA
CTGAATGAGAACTAGATTTGGCTAGAGACATCCATTTTTACACAGGATCC
CTATATTTGTGGGTTAATTATTGATTTTAGTTCGATTTGATGGTTCAATA
TAATTGTTTATCATTTTGATTTACGACATGTTCTCACATATCAATAACTT
TTCCTTCCTAGTTTGATGGACGTCAATATTGTGAATATGACTTTCAACAA
CTTTATGCGCCATGTTGTCGAGGGTGTGGGGAATACATCATTGGGCGGGT
CATCAAAGCTATGGGTGGAAACTGGCATCCTGAATGTTTCCGATGTGAAA
TTTGTGATGATATTTTAGCTGATGCTGGTTTCGTCAAAAATGCTGGAAGG
TTTGTTTTTTTAATGAGAGTCACTAATCTTAGGGAAATCGTATTATTATT
AGGGTTTTGAAATGCTGGGCTTTTCCTTTTTTCCTTTTTGAGTCACAAGA
TAGATTTCATTGTATTACACTTAAAAACATAATATTCAAATTCTAAGTTT
CAAACTATTGGAACTGCCACATTCTCAAAAATTTGCCTTTGGAAGTTTCT
TATTATTAATTTTTTATTCAAGCCATGATCATTTTTTATTGTTTGTTTTT
ATCAATCCAATCTTTTTCTTAAATAATGCTTGCATCTGCCTAGGCTTGCG
TACATTTTGATAACTAAACATCAAAATTGGTTGGGAAATGTCAGCAATTC
TAGAGTGTTTCTATTTTCATTATAGAGCATTGTGCAAGCGTTGTAACGCC
AACGAGAAGTCGAAAGGTGGTCGATTCATGTGCCACAAATGTCACACATA
TATTGAAGAAGGGAAACACATCATTTATATGGGTGATCCTGTCCATCCAT
GGCATTACAATTGTTATGAGTGTGGGTAAGTGTCTCTTCGCGAAAAAAAT
GGTTTTTAGGCTGGGAAAAGGATACCGAGCGTACAAGTGTGAATTGGATA
CTGAGGAAAATAGAAATGTTACCAAAATCTTCGACACAAGTCTCAGACAG
ACTTCTGTCACAAGTCTCAGACAGACTTCTGTCACAAAGAAGTGTAAAAA
CAAGCTTTTTCCTCTTTGTCCCCTGCTAGAATATCTCTTAGTCTTAAGTA
TATAATTATAAGTTAAGCATGGTTATCTCTTAAGTCGAAATTGAAATATC
TTTCGAAATGGGCTTTATACTGTCTTGAATAGATCTGTAATAGTTTCCCT
TAATAAATGAGGAATATTTATCAATCAGGCTGGACTTAAAAATTTGTTGG
TTTGCCGTCACCCGACCGACCCTACCTCGAAACCTGCCGACCGAAAAAAT
TTTATTGCCATTTTAAAGAAGATTTTTTTTCCTTCAAAAACTTCAAACAA
TAAAAAATCAAAACTCGTATCTTGTTTGTCTCAAGCATAAGAATCGTAAA
TTCCCTGCTAGCACTTCTGTTTTTTATTCAAAATTACCTTAAATGTAAAC
AAACTGGTTAACCCTTCCATGGACGAAAATTTCATAAATCGCCAAAATAA
AAAAAAAAATCCGACCGACCGACCCACCTCCAAAATCTAGGGTCGGGTGA
CGGCAAACCAACAATTTTTTAAGCCCAGCCTCAAACCCCCTTTAAAATAT
AGCCCAACATGATTATTGTAATTTGTGTTTACTTTATTTCTTTTACTTAG
TCGTGAACTTGACGAGACTTGTCGTAAACGTAACAATGAATTGTATTGTC
TTCGATGCCACGATAAATTGGGAATACCCATCTGTGGCGCTTGCAAGTAA
GTTTTTTTTTAATAAGTTCAAATTGTGTGAAGAGATGCTATGAAGTCTTT
TGTTACTTTGATCGAAAACCGAAAGAATCTTTTATATGGGGTCATCCATA
TAGAACGTACGCAAATATTTTACTCCTTTTTACGCATAAATCAATAGAGA
TGACTGAATCAAACAGTAAACCAAAGCTTTTGTTAAGTGTACGTACTATA
TGCATGACTCCTATCTACTCGATTAGGAAGGTTAACTTAAACGTAAAAAG
AGAAATTTAATAAAAGTCTTTTCTCAAAGAAACCAGAAGTCTTAAAACGT
ACGAATGCATGGGATTCATATTTTGATTTTAATTTAAAAAGCACTAAATT
TTAGGAATCTTGTATTGTAACTGGACTTCTTTTTCTGTAATATAGGAAGC
CGATCGAAGACGAACGTGTCGTGAACGCCATCGGCAAACAGTGGCACGTC
GACGTGAGTATTTTTCCTAATACTTATGGTCTCGTCATGTTTTGGTCTGT
CTCAGTGGTTCAATTAGAGCATAATTGAATGATAATTTAGACCTACAGAG
ATGAGATGATCATTTCAAATCCATTTTAACCTAGAACTAAGACCATTAAA
AGGATAATTAAAATCGTTTGAAAATTGTTATCCCCTGATACCACGGTTAA
AAAAATGGTAGATTTTCATTGCTCAACTAATTTTGGCTATCTTCTCGAAG
TACATAGTAGTGTTGTTGCTATGGTAGGTTAAGATACTTGCACTTTTACG
GCAAATTTGATAAAGATCTTTGAGAATACATATTGACTGTGTAAACCAAA
AAAAACAGATACTGATTGTGTACGTTTCAGTAACTATTATTGGATGGCCG
AGTGGTTAAGACATCAGTGTTCTAAACCAGGGGTTCGTGGTTCGAATCCC
TGCTCCTTCCAATGTTCCGTTCAGCTCATAGATAGCCTAGCTGGTTGACC
GTGGACCCTGTGAAAACTATCGAAAGACTGTCTCAGACCATGTTCGCACG
TGACAGCTTCGTTTCGCCCCGAAACGAAATGAAGCCATTCTATTGGTTAC
ATTCAAATGTTACGTCATTTCTAACCAATAGAATGGCTTCATTCCGTTTG
GGAGCGAAACGGAACCGTCACGTGCGAACATGGTCTCAAAGTCCTTGATT
GAAGTTCTATCCACACAAAATATTGATTCTATCTATTATTTTACTCGTAT
TCTTTTTTTAGCATTTCTGTTGTGCGAAATGCGAGAAACCATTTTACGGG
AATCGTCATTACGAGAAGAACGGACTTGCGTATTGTGAGACACATTTCAA
CCAACTCTTTGGTGATATATGCTTCATTTGTAACAGGGCCATAACTAGGG
ACGGTAAGCTGATCTCATTTGTTTTGGTTTTCAAGTTTGAACAAAAAGGT
TATATAGTTGACGCTCTCTAATTCGACGTTAGACATTTCGACGTTAGACA
TTTCGACGTTATACATTTCGACGCTCTACCACTCGATACTCTCCCTTATT
CGATGAAAATCCAATTCCATTAAACATCGAATTAGAGAGCGTCAACTGTG
CTTATATATTGCGTAAGATTTGCATTTACCCAACTGCGCATAGAATTTTA
TTGGCAGATAACTGTTGAAACTCGATTCATATGTACAGGCCTGTTTTGTC
TTGTCAATGTATAATGGCTGAACGGTTGTTAAAAGTGGTAGTGGGTTGTG
TTGCAGCAAGATTCGAAATGACAATTTCAAGGTTGCTCTATAGCAAATTA
TGTCCGATGTTCGACCATTATGCCTGTTGCTGTTTTTAGGGGTGCTGTTT
TAATACTGGCCATATATTGTATTTAAAAATATCATAAATTCGTCATCTGT
TATCGTTCCTGTTAAAATACTAGGTCACAGTGTGGATGTAAACCACACTG
AAACGACCGCCTTCCATCACGCATCACGCTCGCGAAAGAGCGCGCGTACA
TTATTAACGCCTACATGTCATCTCCAGTACATTTTAGATTATTCATTGAA
AACAGATTACAATATAGTCATTTTTCATGTCTCGATTATTCAGTTCCGAA
TAAAAGCCATTCAGGGAAAAAAAAAGAGAAACACCTGGGTAATCTAGTTA
AAAAAACCGAAAGTAAATGACAGACAAAGTAATAAGCCAAAGCAAAACGA
GATTAGCGTACCACTATGAAAGTCATGATTTTTTTCCTATTATTACTTTC
ATTTAACTTTTTTTCTTTCAGTTGTGACTGCCTTGAATAAATGTTTTTGC
GTACATCACTTTATTTGTACTGGCTGTAATACCAAGCTCACTCTAAAGTA
AGTACTCACCTTCCTTTGTGTTACAGTTTTCTTTTAAAATTTCTAACTGT
GCCTAAAAACATTCGCTACTAAGCCTTTCCCCGACTATGAATGATAGTTT
GAATGACAATGACTACAAAATTTAAGAGTCTACTGAATCACGTGCCTCAC
GTGCCCTAGTGCCTTAACTTTTTTTTACGTGTCTCTAGTACCTCAAGTGC
CCTAGTGCCTAACGTTCCTCCCGTGCCTCAAGTGCCATGACTTTTTCACG
TGCCCTAATTTTTTCACGTGCCCTGAATTTTTCACATGCCCTAATTTTTT
CACGTGCCTTAATTTTTTCACGTGCCCTGGAAAAAAATCCAAAATCCAAA
ATTACGTGCAAATTGAGTATAAAGTGATACACTTTTTATATAAGAACAAA
TTCATATGATCAATTCTGAAAAATAATTATCACTATTTCAAAGCTATATG
ATTATTTATTTCAAAGCTATACCGGGTGACCCACGAAAAAGTTCGGACAG
TTTTCGGCGTCTCGAGGCCGAACAAATGTCTCAAAGTGCTTGAAATTTTA
GTATGTAGAAAGTAGATATTCTAACTTAAAGTTTGAGCTATTACTTTTTA
AATTTGACCCACAAGTTCCCTACTTATGAGCTTTTAAAGTCAAAATTCAC
TTTTCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
AAAAAAAAAAAAAAAAAAATTATAATTTGATACCTCATTTTTGACGTGTT
TTTGCACTTTCCGATAATTGAATTTTGACTTTAAAAGCTGATAAATGAAG
AACCACTGAATCAAATTTAAAAAGTAATAGCTCAAAGTTTAAGTTAGAGC
ATCCTCTATCTTTTAAAAAAAAGATTGAGTTTAAATTACTTTTATTTCAG
ACCCTAGCCAACGAAAACCGTCCGAACTTTTTGTGGGTCACCCGGTATGA
TTATTTAAAAAAAAGGAAATCAGTAAAAAATAGAGAATTTACGTCATTTG
AATTTAAACTTTTTATACATAACCGTGCTTTTGCCGCTCAGCGAAGAATA
TAATAAGAAGAGGTCAGATATTTAGTCTAATTGTTAGTAATTAAAAATTT
GAAAAAAAGCTTTAACGATATTTTAATTAGCTAATTTCTGTGTTTAGAAA
GGCAACATAAGTTAAATAAAAATTATTGAGGTTATTAATTAAGAAATTAG
GGCACGGTAAATTTTAAGGCACTAGGGCACTTGGGGCACGTGAGACACTA
AAAAAGCTGTCAATTACCGATACCGAGTACCTATCGACTTAATCCTGAAA
TTCCGATAAGAAAGACCTCATATCGCTTAAAAAAATTTAGGGCAAGTGAG
AATTTTAGGGCACGTGAAAATTTTAGGGCACGTGAGAATTTTAGGGCACT
AGGGCACGTGAAATTTTAAGGCACTAGGGCACTTGGGCAATAGGGCACTA
GAGGCACGTGATTTAGCAGACTCAAAATTTGATACTCTGTGCTTTCATGA
CAGCATCAAACTGGCTTATCAAAATAATCAAAAGTGTAACCGAAGTTTTA
TAACTCTTTCATGAACTTTTTTTTTCATTTTTCCAGGAGCAAGTTCCATG
AGATTGACATGAAACCATTATGTTTACGTTGTCACGAGCGACTACCTAAA
GAATTACGTAAGCGTCTTCGAAAAGCTGAGTCAGCTAATCGTTAAACTGA
CGTCATTTTTTGGATGGCTGCAAGATTTTCACTGAGAGAAATCATCAAAA
AAACACTGACTGGTAAACAGTCNGCAAGATTTTCACTGAGAGAAATCATC
AACAAAAACACTGACTGGTAAACAGTCTTAGGGTAGATAGTTAGGGTTTA
AATGTTTAAAATCTAGAATTGGCTTTTCGATTTCCATGGAGATGAGATTC
TTTTGTACATGTTTTTTTGATGAGCAACTCGATTTTTAGCTTCAACCCTA
AGGCTGCATTATGGCTCAATCACTTAGAAATTGCCAGCCCTAATATTATA
CCACGTTTATGTTATGTTATCTCAAAAGCTTTTTCTTCAAGAGAGATTTG
GAAAATATTTGGCTGACTTCGGGGCTCGAGCTTGAGGAACATGGTTGCTT
ATGTAAAATAAATGTGTACATACACTTTTTTTGAGAACAATAAGGCTCAA
AATTGCCAAAAAATAAGAACAATTTAAGAACAATGCTGAGCCTGGGATTG
CTAAATTTCAAATAATTTGGTGGGCAAACAAGTAAATAATGGGTATAAAG
CCAAAATAACTCAATTTCAACCTTTGAATTTTAATTCAATTTAATTTCAA
TACAGAAGCAACAACTAAAGTCGGAAATTGAAATTCCAATTTTATTGAAT
TTACATTTTTACTCTGTGATAGAGAATACGTTTGTTTTTTTGCAAGTCGA
AAAAAATACCCAAATATTTTTATTCCGTGTACTAAAATTTTCATTTATTT
GTTTTGTATGTTTGTTTAAAATATAGCATATTTTATCTTCTTTTTTTTCA
TTAGATGTGCTCTGGTTTTAGAAAACGCTTAATTTTTGAAGATCGGTTCA
AAATTCTGAAAAAATTTAATTAAAATAATTTTCCCTGAAACGTTTTTCTG
TACAAAGAATCGAGTGAATTAAACCAGATTTTTTTAATTTTTATTATACT
AAGTTTTTAAAACTATTTCTTTGAGCCCATTTAATATTATATGATGATGG
CATACACCTGTCTGAATAACCCCCATGTCAGTTTGTCTTCTGTATGTCTA
TGTTTGAGGCTCCCATTCCCCAATAACTTTCTGTAAGAACCTCTGACGTT
GGAAAGAGCATTTGAAATTTTAAAGTGGAACAACCTGACACAGACTTGTC
AGTTGACATAACTACTTGGGAAATCAAGTTTTTCCATGTACACGTTTTTT
TAGTAAGAACAAACTATATAAGAACTAGGCTTCGATGGCCTAAATGTTAA
GAACAAGTTACGAACAGTTTAAGGTTTTGCGGACTCTAAAATACCCTATT
CCTTTTGAAAATGGACAAAAATGCTCAAAAAATGGTAGAAATAAGAACAT
GCTAAGAACATTTTTAGGCTTACAACTAAAAAAGTTAAGAACATCTGAAG
GCTTCAAAAATTTTGGATGTTCTTATTAAAAAAACGTGTATAAGAACAGG
TACACTTAAAATCTCAGACTATCTGACTATCCTTTAATTATTCAACTTTT
GGTGAAAGGCGTCTTTAATTTTCTTAAAGTGATTATCAGATTATTTTTGA
TATTTGGCTTGGAGATACCTTTTATGGTCCAGAGAGACACCTCTAAATTT
TTTGACCCAATTTTTGAGATATAAAAGCTGAGATATTTGACTTTGAAATC
TCTAAAAATGAGTCTTTGCACACTCTTTACGTTGAATTTCTATTGTTTTC
AAGTAAAAATTTAAAAATTCAAAGTCGAATATCTCAGCTTTGGAAAATAA
TTGGGTCAAAAACTTTGGAGGTGTTTCTTAGGACCATAAAAGGTATCTCT
AAGCCAAATATCAAAAATCATCTGATAATGCCTCTAAAATTTAACAGCAA
ATTAATCATTGTGTATAGTGGTCATTGAATAGCTGTCTTCCAAATGTATA
GTCCGCCAATATCTAAAATACTTTAATTTTTGTATCCACTTTTTTATTGC
TATGTCTTGAATATGAAATATATTTAACTCAAATATAATCTAAATTTTTT
TTTTACATAAATTGTCCTTATATTTTACTGAGAAGGTGAAATTATTTTGA
TAATTTCAAATCACTAGCA

Coding sequence (CDS) from alignment at sc0000074:532143..544161-

>TCONS_00007200 ID=TCONS_00007200|Name=TCONS_00007200|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at sc0000074:532143..544161- (Clytia hemisphaerica)
ATGAACTCTCAACAACCATGTTGCAGTGTTTGCAATGAAATCTTCGATGA
TGAAGAGAAAATGGTGAACTCAAATGGGCAGCTTTATCATGAAAACTGTT
TTGTTTGTGCTCAATGTTTTCGACCCTTTGAGGATGGTGTTTTTTATGAA
TTTGATGGACGTCAATATTGTGAATATGACTTTCAACAACTTTATGCGCC
ATGTTGTCGAGGGTGTGGGGAATACATCATTGGGCGGGTCATCAAAGCTA
TGGGTGGAAACTGGCATCCTGAATGTTTCCGATGTGAAATTTGTGATGAT
ATTTTAGCTGATGCTGGTTTCGTCAAAAATGCTGGAAGAGCATTGTGCAA
GCGTTGTAACGCCAACGAGAAGTCGAAAGGTGGTCGATTCATGTGCCACA
AATGTCACACATATATTGAAGAAGGGAAACACATCATTTATATGGGTGAT
CCTGTCCATCCATGGCATTACAATTGTTATGAGTGTGGTCGTGAACTTGA
CGAGACTTGTCGTAAACGTAACAATGAATTGTATTGTCTTCGATGCCACG
ATAAATTGGGAATACCCATCTGTGGCGCTTGCAAGAAGCCGATCGAAGAC
GAACGTGTCGTGAACGCCATCGGCAAACAGTGGCACGTCGACCATTTCTG
TTGTGCGAAATGCGAGAAACCATTTTACGGGAATCGTCATTACGAGAAGA
ACGGACTTGCGTATTGTGAGACACATTTCAACCAACTCTTTGGTGATATA
TGCTTCATTTGTAACAGGGCCATAACTAGGGACGTTGTGACTGCCTTGAA
TAAATGTTTTTGCGTACATCACTTTATTTGTACTGGCTGTAATACCAAGC
TCACTCTAAAGAGCAAGTTCCATGAGATTGACATGAAACCATTATGTTTA
CGTTGTCACGAGCGACTACCTAAAGAATTACGTAAGCGTCTTCGAAAAGC
TGAGTCAGCTAATCGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004037XLOC_004037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007200-exon-sc0000074-1575043694:543824..544161TCONS_00007200-exon-sc0000074-1575043694:543824..544161Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1575043694:541903..541948TCONS_00007200-exon-sc0000074-1575043694:541903..541948Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1575043694:540563..540750TCONS_00007200-exon-sc0000074-1575043694:540563..540750Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1575043694:540037..540186TCONS_00007200-exon-sc0000074-1575043694:540037..540186Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1575043694:539166..539261TCONS_00007200-exon-sc0000074-1575043694:539166..539261Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1575043694:538709..538766TCONS_00007200-exon-sc0000074-1575043694:538709..538766Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1575043694:537809..537950TCONS_00007200-exon-sc0000074-1575043694:537809..537950Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1575043694:536865..536940TCONS_00007200-exon-sc0000074-1575043694:536865..536940Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1575043694:532143..534325TCONS_00007200-exon-sc0000074-1575043694:532143..534325Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:543824..544161TCONS_00007200-exon-sc0000074-1510915933:543824..544161Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:541903..541948TCONS_00007200-exon-sc0000074-1510915933:541903..541948Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:540563..540750TCONS_00007200-exon-sc0000074-1510915933:540563..540750Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:540037..540186TCONS_00007200-exon-sc0000074-1510915933:540037..540186Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:539166..539261TCONS_00007200-exon-sc0000074-1510915933:539166..539261Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:538709..538766TCONS_00007200-exon-sc0000074-1510915933:538709..538766Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:537809..537950TCONS_00007200-exon-sc0000074-1510915933:537809..537950Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:536865..536940TCONS_00007200-exon-sc0000074-1510915933:536865..536940Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1510915933:532143..534325TCONS_00007200-exon-sc0000074-1510915933:532143..534325Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:543824..544161TCONS_00007200-exon-sc0000074-1491911889:543824..544161Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:541903..541948TCONS_00007200-exon-sc0000074-1491911889:541903..541948Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:540563..540750TCONS_00007200-exon-sc0000074-1491911889:540563..540750Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:540037..540186TCONS_00007200-exon-sc0000074-1491911889:540037..540186Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:539166..539261TCONS_00007200-exon-sc0000074-1491911889:539166..539261Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:538709..538766TCONS_00007200-exon-sc0000074-1491911889:538709..538766Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:537809..537950TCONS_00007200-exon-sc0000074-1491911889:537809..537950Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:536865..536940TCONS_00007200-exon-sc0000074-1491911889:536865..536940Clytia hemisphaericaexon
TCONS_00007200-exon-sc0000074-1491911889:532143..534325TCONS_00007200-exon-sc0000074-1491911889:532143..534325Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007200-proteinTCONS_00007200-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:532143..544161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3241	12.5854	40.2688	48.7559	53.9563	40.7268	94.1532	103.017	59.7303	65.8595	30.5438	32.7551	39.2126	29.2596	28.1799	29.3664	52.6208	59.3101	26.9055	36.7975	42.7081	45.5384	29.0443	32.8505	22.4493	30.2316	72.0214	67.4972	52.544	62.7648
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
IPR017351PINCH
Blast
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BLAST of TCONS_00007200 vs. Swiss-Prot (Human)
Match: LIMS1 (LIM and senescent cell antigen-like-containing domain protein 1 OS=Homo sapiens GN=LIMS1 PE=1 SV=4)

HSP 1 Score: 401.749 bits (1031), Expect = 7.449e-130
Identity = 192/297 (64.65%), Postives = 239/297 (80.47%), Query Frame = 1 
Query:  256 CSVCNEIFDDEEKMVNSNGQLYHENCFVCAQCFRPFEDGVFYEFDGRQYCEYDFQQLYAPCCRGCGEYIIGRVIKAMGGNWHPECFRCEICDDILADAGFVKNAGRALCKRCNANEKSKG-GRFMCHKCHTYIEEGKHIIYMGDPVHPWHYNCYECGRELDETCRKRNNELYCLRCHDKLGIPICGACKKPIEDERVVNAIGKQWHVDHFCCAKCEKPFYGNRHYEKNGLAYCETHFNQLFGDICFICNRAITRDVVTALNKCFCVHHFICTGCNTKLTLKSKFHEIDMKPLCLRCH 1143
            C  C   F   EK+VNSNG+LYHE CFVCAQCF+ F +G+FYEF+GR+YCE+DFQ L+APCC  CGE+IIGRVIKAM  +WHPECFRC++C ++LAD GFVKNAGR LC+ C+  EK++G G+++C KCH  I+E + +I+  DP HP H+NC  CG+EL    R+   ELYCL CHDK+G+PICGAC++PIE  RVVNA+GKQWHV+HF CAKCEKPF G+RHYE+ GLAYCETH+NQLFGD+CF CNR I  DVV+ALNK +CV+ F C+ CNTKLTLK+KF E DMKP+C +C+
Sbjct:   10 CERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDE-QPLIFKNDPYHPDHFNCANCGKELTADARELKGELYCLPCHDKMGVPICGACRRPIEG-RVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCFHCNRVIEGDVVSALNKAWCVNCFACSTCNTKLTLKNKFVEFDMKPVCKKCY 304
The following BLAST results are available for this feature:
BLAST of TCONS_00007200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIMS17.449e-13064.65LIM and senescent cell antigen-like-containing dom... [more]
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