TCONS_00007226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007226
Unique NameTCONS_00007226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007226 ID=TCONS_00007226|Name=TCONS_00007226|organism=Clytia hemisphaerica|type=transcript|length=453bp
tcccagtcacctgatgacgtcacctGACAGTGGTgaggattgatttattt
gattattttcagtggggacaaaaatgacaggataattttccatcggggac
gatattttggccaatgtttccagtgggaagggttcctagtgggtctgtga
gaaggggatgtttaATAGGTTAGGTAGAGATCATATAAAAATTAGGTTTA
AAGCCCTAGGTAAATGACCGACCATACGTGCGGCCTTTAAGGGTCTTTTT
TTCAAGCTTCACAAAGGAAACTGACAACTGTAAAGGTCGAAATGAGGAAA
GATGAGAAAAGCTGCTCTCTTAGGGTGTTTTGATAACGTTTGTTGAATTA
TTCTAATTCTTCTTAAATTTAGTCGTATAGCCTGCTAGGGTGTTTGGTTG
ACAGTGAAGTGGTTGTGGTTTTTGAACGAAAAGTTGGAAAATGGGCCTAA
TTT
Run BLAST on NCBI

transcript from alignment at sc0000074:441807..442259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007226 ID=TCONS_00007226|Name=TCONS_00007226|organism=Clytia hemisphaerica|type=transcript|length=453bp|location=Sequence derived from alignment at sc0000074:441807..442259 (Clytia hemisphaerica)
AAATTAGGCCCATTTTCCAACTTTTCGTTCAAAAACCACAACCACTTCAC
TGTCAACCAAACACCCTAGCAGGCTATACGACTAAATTTAAGAAGAATTA
GAATAATTCAACAAACGTTATCAAAACACCCTAAGAGAGCAGCTTTTCTC
ATCTTTCCTCATTTCGACCTTTACAGTTGTCAGTTTCCTTTGTGAAGCTT
GAAAAAAAGACCCTTAAAGGCCGCACGTATGGTCGGTCATTTACCTAGGG
CTTTAAACCTAATTTTTATATGATCTCTACCTAACCTATtaaacatcccc
ttctcacagacccactaggaacccttcccactggaaacattggccaaaat
atcgtccccgatggaaaattatcctgtcatttttgtccccactgaaaata
atcaaataaatcaatcctcACCACTGTCaggtgacgtcatcaggtgactg
gga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004057XLOC_004057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007226-exon-sc0000074-1491911889:441807..442259TCONS_00007226-exon-sc0000074-1491911889:441807..442259Clytia hemisphaericaexon
TCONS_00007226-exon-sc0000074-1510915933:441807..442259TCONS_00007226-exon-sc0000074-1510915933:441807..442259Clytia hemisphaericaexon
TCONS_00007226-exon-sc0000074-1575043694:441807..442259TCONS_00007226-exon-sc0000074-1575043694:441807..442259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:441807..442259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.14558	0.141788	0.32926	0	0.196152	0.154946	0.186989	0.52502	0	0.151769	0.14731	0.290616	0.0967014	0.665007	0	0.088603	0.109152	0.111877	1.23651	2.4261	0	0.61263	0	0.151567	0.936661	0	0	0.212776	0.161383	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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