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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007228 ID=TCONS_00007228|Name=TCONS_00007228|organism=Clytia hemisphaerica|type=transcript|length=2381bp
cattttttaagATCATTATTGCCAGACTAAAAAATTAACATAAAGAACAA
TATTGAAATAGTAAAGTagaaatatgataaaaaaattttatggCAAAATT
CTTCTACATGATTTTCTTATTTCTATAACAgaaaatataataaatttttc
aaGGATCATACATAGAATGATTCCTCGAAATCTGTGTTGCGTTGGGAGGT
TTTCAACCAAAACTCAAACAAACTGCCTGTTCCTAAATGACATAAATTTT
ACCCACaaatcaaaaactgaaaattaagaTAATATGCTTTTAAGCTCATG
ATAGTGTAAAGCCAGAAAGCTTTTCATCCCAAtctcaaaaacatatttaa
atTCTAAAACTTACCTTACAGTACCATGGTGAAAACTCActcaaaagcaa
aaagaaaaacttttcacaGCTGATCCCACATGAAATATTTACAACCTTGA
GCTAAGAAATGTGTAACTTTATCATATTGTATACAAGTATTTTTCTTAGT
ATTTCTCATCAGGCTGGTTGGGAGCGAAAATAACGTCATGCAGAATAGGT
TTGCAAATTCTTCTTTCCACATTTTTGATAGTTCAGAAAAAGAAAGATTG
AATTTTAAGGCACTAATTTTCATTTGAGAAAAAGTTATCTTTCTTTGCCT
AAAATTTAGTCAAAATGACTTAAGTTACAGCAAAATACCAGGCAACTATA
TGAAGTTCCGTTTTCAGACTTCAACTAGCCCTTAGAGACTTCATAACATT
ATGTTTAGGAAAAGGTGCATTGAGatgaataataaataaatagtaAATAT
ACCACTGGCTCACATTGTATACTTACCCACTGCTATTTCTTGCCCTTAAC
TGCATGGGCTTTTATCATCTAAAAGTTCGATTTTATCTTTATtctacaaa
ataatttttaaaatccagATGCCAGAAATTATTTGGACTATTTCGCAGAT
AATAGatatagacaggcagctgacgacatctaaaatctggacgactttgg
gacaaacgccgagttgatttttcttgttcccatatatctactgatcctaa
aaattttactcggcgtccgaaaatttatttaacgGACATGTCCGGTAGTA
ATTGGTCAAATGATGACGTAACcaccaaaagtgaaaatttgatttcagca
tataataatgatatataTATATCATTCGACGCATTTTTCGATCTAGATTC
TAAATCACATTAGTCTCAATaggtaaaaatttaaatttcaaaagttatga
cttaaaTTTGACATGTGATTTTGGTCAATCATGACCCTTTTGATGTCATT
AGCTGGCTGTcttataccgtgagattgggtaacttgcatcagtggaggct
aacatgcatggccctcaaatgaaagacctggctggtcattaaaatacaaa
gttaaatcaaaacaaaaatagtagattggagctgcgagcggagctgtgta
attgtattttaatgaccagacaggtcattcatttgagggctatgcatatt
agcctccactgatgcaagttaccaccCGATCTCACAGTAGCTAATAGACC
TTTACGctggatgtcatgttgaataatttaaaATCTAGCATCACAACAAT
CATACATGAAAGCAGAATAGCTGATAGACACTTGAAAGCAGGGGTTTGGG
GGCCCCATAAGCCCCCGAAAGCCCTGGGATATATTTGATTTTCGCATGCc
taaaagttgctcaaaatttgttatattttccAGTTTTCCAATTAAAAAGG
CTAGAGAAATAACTTGTATTGCTGGTACTTCTAAGGTGGATGCACTTAAA
TCTAGCGTAATGAAATCAGGGGTTAGAATAGCGATGCTCCTCTTgtcttg
aaaagctttgacttACAACAATATCTTACTTATTATATCTGCCTGAATTA
CCTATGCATCAGTGTGTCATTGTTTTAAATCTGGAGttttaaattattca
aaatgacGTTATGATTAGCAACAAAAGGTCTTGAGTGATACTTTTAAGTT
TTATCAAAGTTTTCTATTTACTACCTAACAGATTATGCTACATTAGATAG
ATTCAAGAttttaaaaaggtaaaaaaaggaAGCACCAACACCCTCAAATT
TAAATATAATGGTAAACTATCAAATCATGTCATGAAATAAGATACATGAA
ATGATCATAAtggtttttaatggtttttagTACCCacagaaaaacttttc
ttttctcAATCTGTCAATATCACAagtcaaacaaaaataaaactaaaCGG
TGCTGCGTTAGTCAGCTAAAAGTTTCCATTCATTATTCTCCATATGACAT
TAATTTTACCTTTCACAGATCAAATCATAAATATTGCAAAGTCCTAAAAA
GTGATAACTGTATGTGGCATTTTGATGTTTG Run BLAST on NCBI transcript from alignment at sc0000074:513897..516277 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007228 ID=TCONS_00007228|Name=TCONS_00007228|organism=Clytia hemisphaerica|type=transcript|length=2381bp|location=Sequence derived from alignment at sc0000074:513897..516277 (Clytia hemisphaerica)
CAAACATCAAAATGCCACATACAGTTATCACTTTTTAGGACTTTGCAATA
TTTATGATTTGATCTGTGAAAGGTAAAATTAATGTCATATGGAGAATAAT
GAATGGAAACTTTTAGCTGACTAACGCAGCACCGtttagttttatttttg
tttgactTGTGATATTGACAGATTgagaaaagaaaagtttttctgtGGGT
ActaaaaaccattaaaaaccaTTATGATCATTTCATGTATCTTATTTCAT
GACATGATTTGATAGTTTACCATTATATTTAAATTTGAGGGTGTTGGTGC
TtcctttttttacctttttaaaaTCTTGAATCTATCTAATGTAGCATAAT
CTGTTAGGTAGTAAATAGAAAACTTTGATAAAACTTAAAAGTATCACTCA
AGACCTTTTGTTGCTAATCATAACgtcattttgaataatttaaaaCTCCA
GATTTAAAACAATGACACACTGATGCATAGGTAATTCAGGCAGATATAAT
AAGTAAGATATTGTTGTaagtcaaagcttttcaagacAAGAGGAGCATCG
CTATTCTAACCCCTGATTTCATTACGCTAGATTTAAGTGCATCCACCTTA
GAAGTACCAGCAATACAAGTTATTTCTCTAGCCTTTTTAATTGGAAAACT
ggaaaatataacaaattttgagcaacttttagGCATGCGAAAATCAAATA
TATCCCAGGGCTTTCGGGGGCTTATGGGGCCCCCAAACCCCTGCTTTCAA
GTGTCTATCAGCTATTCTGCTTTCATGTATGATTGTTGTGATGCTAGATt
ttaaattattcaacatgacatccagCGTAAAGGTCTATTAGCTACTGTGA
GATCGggtggtaacttgcatcagtggaggctaatatgcatagccctcaaa
tgaatgacctgtctggtcattaaaatacaattacacagctccgctcgcag
ctccaatctactatttttgttttgatttaactttgtattttaatgaccag
ccaggtctttcatttgagggccatgcatgttagcctccactgatgcaagt
tacccaatctcacggtataagACAGCCAGCTAATGACATCAAAAGGGTCA
TGATTGACCAAAATCACATGTCAAAtttaagtcataacttttgaaattta
aatttttacctATTGAGACTAATGTGATTTAGAATCTAGATCGAAAAATG
CGTCGAATGATATAtatatatcattattatatgctgaaatcaaattttca
cttttggtgGTTACGTCATCATTTGACCAATTACTACCGGACATGTCcgt
taaataaattttcggacgccgagtaaaatttttaggatcagtagatatat
gggaacaagaaaaatcaactcggcgtttgtcccaaagtcgtccagatttt
agatgtcgtcagctgcctgtctatatCTATTATCTGCGAAATAGTCCAAA
TAATTTCTGGCATctggattttaaaaattattttgtagaATAAAGATAAA
ATCGAACTTTTAGATGATAAAAGCCCATGCAGTTAAGGGCAAGAAATAGC
AGTGGGTAAGTATACAATGTGAGCCAGTGGTATATTtactatttatttat
tattcatCTCAATGCACCTTTTCCTAAACATAATGTTATGAAGTCTCTAA
GGGCTAGTTGAAGTCTGAAAACGGAACTTCATATAGTTGCCTGGTATTTT
GCTGTAACTTAAGTCATTTTGACTAAATTTTAGGCAAAGAAAGATAACTT
TTTCTCAAATGAAAATTAGTGCCTTAAAATTCAATCTTTCTTTTTCTGAA
CTATCAAAAATGTGGAAAGAAGAATTTGCAAACCTATTCTGCATGACGTT
ATTTTCGCTCCCAACCAGCCTGATGAGAAATACTAAGAAAAATACTTGTA
TACAATATGATAAAGTTACACATTTCTTAGCTCAAGGTTGTAAATATTTC
ATGTGGGATCAGCtgtgaaaagtttttctttttgcttttgagTGAGTTTT
CACCATGGTACTGTAAGGTAAGTTTTAGAatttaaatatgtttttgagaT
TGGGATGAAAAGCTTTCTGGCTTTACACTATCATGAGCTTAAAAGCATAT
TAtcttaattttcagtttttgatttGTGGGTAAAATTTATGTCATTTAGG
AACAGGCAGTTTGTTTGAGTTTTGGTTGAAAACCTCCCAACGCAACACAG
ATTTCGAGGAATCATTCTATGTATGATCCttgaaaaatttattatatttt
cTGTTATAGAAATAAGAAAATCATGTAGAAGAATTTTGccataaaatttt
tttatcatatttctACTTTACTATTTCAATATTGTTCTTTATGTTAATTT
TTTAGTCTGGCAATAATGATcttaaaaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007228-exon-sc0000074-1491911889:513897..516277 | TCONS_00007228-exon-sc0000074-1491911889:513897..516277 | Clytia hemisphaerica | exon |
| TCONS_00007228-exon-sc0000074-1510915933:513897..516277 | TCONS_00007228-exon-sc0000074-1510915933:513897..516277 | Clytia hemisphaerica | exon |
| TCONS_00007228-exon-sc0000074-1575043694:513897..516277 | TCONS_00007228-exon-sc0000074-1575043694:513897..516277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:513897..516277 . |
Blast
The following BLAST results are available for this feature:
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