TCONS_00007232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007232
Unique NameTCONS_00007232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007232 ID=TCONS_00007232|Name=TCONS_00007232|organism=Clytia hemisphaerica|type=transcript|length=268bp
NGTTTATGCTAGATTACAAAGGGGATCATTAAATGAATCGATACGGCTAC
ACATTTTAGCCACATTAAAAACCAAAGTTCCTTCCCAATAAAGTTAGCCG
ATATCTTTTGACGTAGTGGTCACGATTGTCTTTTTGACATCAATAATAAG
GTTTTAAATGTGTCAAGCAGAACGTAACACTTTGGCATTGCACTTAACAC
TTCTTTGGAGATGAAACCTTTTTGTTCTAGTTAGGGGATGAAAAGAGTAA
GTCATACTTTTCATAAAG
Run BLAST on NCBI

transcript from alignment at sc0000074:672800..673067

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007232 ID=TCONS_00007232|Name=TCONS_00007232|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0000074:672800..673067 (Clytia hemisphaerica)
CTTTATGAAAAGTATGACTTACTCTTTTCATCCCCTAACTAGAACAAAAA
GGTTTCATCTCCAAAGAAGTGTTAAGTGCAATGCCAAAGTGTTACGTTCT
GCTTGACACATTTAAAACCTTATTATTGATGTCAAAAAGACAATCGTGAC
CACTACGTCAAAAGATATCGGCTAACTTTATTGGGAAGGAACTTTGGTTT
TTAATGTGGCTAAAATGTGTAGCCGTATCGATTCATTTAATGATCCCCTT
TGTAATCTAGCATAAACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004063XLOC_004063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007232-exon-sc0000074-1491911889:672800..673067TCONS_00007232-exon-sc0000074-1491911889:672800..673067Clytia hemisphaericaexon
TCONS_00007232-exon-sc0000074-1510915933:672800..673067TCONS_00007232-exon-sc0000074-1510915933:672800..673067Clytia hemisphaericaexon
TCONS_00007232-exon-sc0000074-1575043694:672800..673067TCONS_00007232-exon-sc0000074-1575043694:672800..673067Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:672800..673067 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.966794	0.350492	1.65903e-08	0	0	0	0	1.06555	1.85146	0.96702	1.5712	3.26328	0.607581	2.97697	1.22879	0.118363	0.875588	0.448725	1.23988	0	9.76491	5.27178	4.85358	1.95886	0	0	0.591955	0	4.03548	2.35926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top