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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007233 ID=TCONS_00007233|Name=TCONS_00007233|organism=Clytia hemisphaerica|type=transcript|length=1040bp
aGAATAAATAGAATAAACACTTGATTTTAGATTGTGAAAACATCCAATGG
ATGTGAGAATGGAATATCAATTTGGCTTTCGATAGATTAATTGATGTTGA
TATACTATAAAACATGGAGAGCGAATCTGATGCAACACTGAAaacaattt
atttgaaatttctgacACGAGAAGAGACTGcggatgtaaaaaaaaacaat
tttcgttGTATCCGAGATGTCCAAGAATGGGCcactaaaaaataccaaat
tcatttttggaatcaaaagttattgttCAATGGGAAAGTCTTGAAAAATG
ATTACAAAAATTTGTTTGATTTATTTCGAGAAAATCCAAATGATTCTGGT
ACTCTGACTTTCCAAGTTCTTGCAGCCAAAACACCTTTCAAAGTAAAAGT
TCTTGAAACAAATGAATCCAAATTCGTGGAACTTGAGGTAACAGAAGATA
ACAGAGTTCTTCAAGTTAAGGAAAAATTAGCACGAGTAAAACCAGATTTT
CCTATCTCTTATATGGTGTTATGTGATTATGCTGACCCATACACACCTCT
GGAAGATGACAGAACTTTAGAATCTCTGGGTGTTGAGCCAAGACATCGTT
TAGAGTTACGGAAAATtattaagtttgaaattaccGTTCAAAACAAGGCT
GAGAACACGATAGCACGAGCATCTTTCACATTTCCAGTTAGTTATCGAGA
CTCAAGaacaattgatgacgtcatgaagaAAGAGATTTTTGTAAGCATGA
AATTACCAAAGAAAACTAAATATTATTTGGACTTGGAAAGGGGTATAAGA
GGATCAGATAGAATTAGCAAGAATGACACTGACCTCTCTACTGCCTTATA
CTTGTATCGGGCAGGTGAGCTACCctacattttgaaaattccatGAAAGT
TTGtgaaatctaaagattttatGATGTTTTTTCTGCGTAcacaattttct
ctttttataaACATAGGTTTTATGATGTACAGTAGTAGCTTGGTGGTAGG
GGAGGTTAACTATTATAGTTGGGGGCCAACAATCGCAACT Run BLAST on NCBI protein sequence of TCONS_00007233-protein >TCONS_00007233-protein ID=TCONS_00007233-protein|Name=TCONS_00007233-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MESESDATLKTIYLKFLTREETADVKKNNFRCIRDVQEWATKKYQIHFWN
QKLLFNGKVLKNDYKNLFDLFRENPNDSGTLTFQVLAAKTPFKVKVLETN
ESKFVELEVTEDNRVLQVKEKLARVKPDFPISYMVLCDYADPYTPLEDDR
TLESLGVEPRHRLELRKIIKFEITVQNKAENTIARASFTFPVSYRDSRTI
DDVMKKEIFVSMKLPKKTKYYLDLERGIRGSDRISKNDTDLSTALYLYRA
GELPYILKIP Run BLAST on NCBI transcript from alignment at sc0000074:688049..689088 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007233 ID=TCONS_00007233|Name=TCONS_00007233|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at sc0000074:688049..689088 (Clytia hemisphaerica)
AGTTGCGATTGTTGGCCCCCAACTATAATAGTTAACCTCCCCTACCACCA
AGCTACTACTGTACATCATAAAACCTATGTttataaaaagagaaaattgt
gTACGCAGAAAAAACATCataaaatctttagatttcaCAAACTTTCatgg
aattttcaaaatgtagGGTAGCTCACCTGCCCGATACAAGTATAAGGCAG
TAGAGAGGTCAGTGTCATTCTTGCTAATTCTATCTGATCCTCTTATACCC
CTTTCCAAGTCCAAATAATATTTAGTTTTCTTTGGTAATTTCATGCTTAC
AAAAATCTCTTtcttcatgacgtcatcaattgttCTTGAGTCTCGATAAC
TAACTGGAAATGTGAAAGATGCTCGTGCTATCGTGTTCTCAGCCTTGTTT
TGAACggtaatttcaaacttaataATTTTCCGTAACTCTAAACGATGTCT
TGGCTCAACACCCAGAGATTCTAAAGTTCTGTCATCTTCCAGAGGTGTGT
ATGGGTCAGCATAATCACATAACACCATATAAGAGATAGGAAAATCTGGT
TTTACTCGTGCTAATTTTTCCTTAACTTGAAGAACTCTGTTATCTTCTGT
TACCTCAAGTTCCACGAATTTGGATTCATTTGTTTCAAGAACTTTTACTT
TGAAAGGTGTTTTGGCTGCAAGAACTTGGAAAGTCAGAGTACCAGAATCA
TTTGGATTTTCTCGAAATAAATCAAACAAATTTTTGTAATCATTTTTCAA
GACTTTCCCATTGaacaataacttttgattccaaaaatgaatttggtatt
ttttagtgGCCCATTCTTGGACATCTCGGATACaacgaaaattgtttttt
tttacatccgCAGTCTCTTCTCGTgtcagaaatttcaaataaattgttTT
CAGTGTTGCATCAGATTCGCTCTCCATGTTTTATAGTATATCAACATCAA
TTAATCTATCGAAAGCCAAATTGATATTCCATTCTCACATCCATTGGATG
TTTTCACAATCTAAAATCAAGTGTTTATTCTATTTATTCt Coding sequence (CDS) from alignment at sc0000074:688049..689088 >TCONS_00007233 ID=TCONS_00007233|Name=TCONS_00007233|organism=Clytia hemisphaerica|type=CDS|length=783bp|location=Sequence derived from alignment at sc0000074:688049..689088 (Clytia hemisphaerica)
TCatggaattttcaaaatgtagGGTAGCTCACCTGCCCGATACAAGTATA
AGGCAGTAGAGAGGTCAGTGTCATTCTTGCTAATTCTATCTGATCCTCTT
ATACCCCTTTCCAAGTCCAAATAATATTTAGTTTTCTTTGGTAATTTCAT
GCTTACAAAAATCTCTTtcttcatgacgtcatcaattgttCTTGAGTCTC
GATAACTAACTGGAAATGTGAAAGATGCTCGTGCTATCGTGTTCTCAGCC
TTGTTTTGAACggtaatttcaaacttaataATTTTCCGTAACTCTAAACG
ATGTCTTGGCTCAACACCCAGAGATTCTAAAGTTCTGTCATCTTCCAGAG
GTGTGTATGGGTCAGCATAATCACATAACACCATATAAGAGATAGGAAAA
TCTGGTTTTACTCGTGCTAATTTTTCCTTAACTTGAAGAACTCTGTTATC
TTCTGTTACCTCAAGTTCCACGAATTTGGATTCATTTGTTTCAAGAACTT
TTACTTTGAAAGGTGTTTTGGCTGCAAGAACTTGGAAAGTCAGAGTACCA
GAATCATTTGGATTTTCTCGAAATAAATCAAACAAATTTTTGTAATCATT
TTTCAAGACTTTCCCATTGaacaataacttttgattccaaaaatgaattt
ggtattttttagtgGCCCATTCTTGGACATCTCGGATACaacgaaaattg
tttttttttacatccgCAGTCTCTTCTCGTgtcagaaatttcaaataaat
tgttTTCAGTGTTGCATCAGATTCGCTCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007233-exon-sc0000074-1491911889:688049..689088 | TCONS_00007233-exon-sc0000074-1491911889:688049..689088 | Clytia hemisphaerica | exon |
| TCONS_00007233-exon-sc0000074-1510915933:688049..689088 | TCONS_00007233-exon-sc0000074-1510915933:688049..689088 | Clytia hemisphaerica | exon |
| TCONS_00007233-exon-sc0000074-1575043694:688049..689088 | TCONS_00007233-exon-sc0000074-1575043694:688049..689088 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000074 | supercontig | sc0000074:688049..689088 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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