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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007244 ID=TCONS_00007244|Name=TCONS_00007244|organism=Clytia hemisphaerica|type=transcript|length=2094bp
AATTGCTCTTATTCTTCGGCGTGCATGCTGTCGTTGCTGTTTTGATTCAA
GACTCTTGggtaatttttatcaaaacactATGGCTGGGACAGCTTGTGTC
ATTGGGGCTGGAATGTCAGGTCTAGCAGCCACAAAATGTTTGATTGATGC
TGGATTCGAGGTGACTTGTTATGAGCGAGACCGATTTGTGGGAGGAAGAT
GGAATAACGAGAACACAAACCCTATCCCAAGATCAACTGTCACAAACCTA
CCAAATTACATGTCATGTTTTTCAGACTTTCCAATGAAAAAGGGAACACC
ACTTTATTTCTCTGCAAATATCTATGCTGAGTATTTTCAAGATTATGCTG
AAAACTTTTGTCTTTTGCCTCATATAAATTTTGAGCACAAGGTTTTGAAA
GTTGAGTTTATGAATTGCCCTAAAAATGGATGGAAAGTGAATTTTAAGAA
TAATGAAGGAGAAGACAATACgaaattatttgattttatGGTGATTTCTT
CAGGATTTTATGTTCTTCCGTACATACCAGAAAAGATAGCTTCAGCTATA
AAAGGATTCGCTGGGAATATCATCCATAGTAAAGATTTCAAAGATGCAGA
AGGTTTTAGGGATAAGAACATTGTTGTTTCTGGTTTAGGAAATACAGGAG
GTGATATTTCAGTGGAGAGCTCTAAATTCTCTAAGAGTACTTGTTTATCA
ACTTCTCGAGGGAGTTACATAATCAGTCGAATCATAAATAATGGTACTAT
ACCAATATCGGCGTCATTGAACAGACTTTCTGCATATACTCCATCATGGT
TGATGAAAtttattaaagaaaatattatacAGAAATGGTCAAATCACGCT
GGTGATATGGAGCGATGGAATTTGAAACCTAAAAATACGCTTAGTGTTAT
AATTAACGACGAGCTTCCATACCGTGTCGCTTTTGGTAAAGTGAAAATCA
GGAAAGAAATCATTAAAACTGAAGGAAGGTCTGTTTATTTCAATGATGGT
CAAGTTCAAGAGGATGTCGATACCATTGTGTTATGTACAGGCTACACACG
TGAATACCCATTTCTCGACGAAACTATATTGAAGCCTCAACGTAAGGGTA
AATTTTTACCACTTTATAAAGGCATGTTTCCTGTACAGCATAACGAATGT
TTAGCCTTTGTTGGTATGTTTTCCATCTTTAATTCTGTTGCCATTGGTGT
CGAGATGCAGTCTAGATTCATTGCTGAACGATTCAAAAGGAATATAAAGT
TACCAAAAGAGGAAGAAATGGCGAAAGAAATTCAAAGTCATCTTCAAATG
TTTGATGATCAATTTAAAGGAGAAGCTAAAGAGTTAAACCTGATAATGGA
TCCTTGGGCTTACTATAACGAGCTTGCTGATCAGATAGGATGTCGCCCTT
CCATACTGCAGATTATGTTCTCTGATCCTATATTGTTTTGGCATTTATGG
TCAAGATATAGTTTTCATGAATTTCGTTTATATGGCCCAAACAAATGGAA
TGGTGCCAGAGATGCTATTATTAACTCTGATGAACTGAGATATAGCTTTT
TTAAGCCTTCATAACACAAGGGGTTCTAAATCAGcgtttcattatttttt
aagcTTACGGTATTTCTTTAACccatttaattttttgttatattttttag
cTTTGTTTTTCATTGTGTTTGTGAGATATTAACTATATAATATAAGTCAC
ATTAATATTTTGCAATTGACTAGAGTGTAATTGAAGTTATATCAAATCTC
AGGTTCAATCGATTTGAGGCTCTATAAAATCTTTATTcttacaagcttct
gattgcGCGGAAAGGAATTAGACTTATGAGCTAttaacacacccctgtct
caatgaaCCCGTGAAATTTTCAACACCACCCAGTTACTACtatggaaaaa
agtgtttttttatcGGGTTTGAATTTAATATCTATGAAACATGAAACTCA
TCGGAGTGTCAGAACTTTCAACTCAATTTTCACTGGAGTAAAATTCACTT
TCATATATTAGTGAGTCTGGTTTTACTAGAATTCGTTAAAATGCTATTTT
TCTCCGATCGGGTGAATCTGACCGGGACACTGGTACAGGGCTGT Run BLAST on NCBI protein sequence of TCONS_00007244-protein >TCONS_00007244-protein ID=TCONS_00007244-protein|Name=TCONS_00007244-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
IALILRRACCRCCFDSRLLGNFYQNTMAGTACVIGAGMSGLAATKCLIDA
GFEVTCYERDRFVGGRWNNENTNPIPRSTVTNLPNYMSCFSDFPMKKGTP
LYFSANIYAEYFQDYAENFCLLPHINFEHKVLKVEFMNCPKNGWKVNFKN
NEGEDNTKLFDFMVISSGFYVLPYIPEKIASAIKGFAGNIIHSKDFKDAE
GFRDKNIVVSGLGNTGGDISVESSKFSKSTCLSTSRGSYIISRIINNGTI
PISASLNRLSAYTPSWLMKFIKENIIQKWSNHAGDMERWNLKPKNTLSVI
INDELPYRVAFGKVKIRKEIIKTEGRSVYFNDGQVQEDVDTIVLCTGYTR
EYPFLDETILKPQRKGKFLPLYKGMFPVQHNECLAFVGMFSIFNSVAIGV
EMQSRFIAERFKRNIKLPKEEEMAKEIQSHLQMFDDQFKGEAKELNLIMD
PWAYYNELADQIGCRPSILQIMFSDPILFWHLWSRYSFHEFRLYGPNKWN
GARDAIINSDELRYSFFKPS Run BLAST on NCBI transcript from alignment at sc0000075:106106..109691+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007244 ID=TCONS_00007244|Name=TCONS_00007244|organism=Clytia hemisphaerica|type=transcript|length=3586bp|location=Sequence derived from alignment at sc0000075:106106..109691+ (Clytia hemisphaerica)
AATTGCTCTTATTCTTCGGCGTGCATGCTGTCGTTGCTGTTTTGATTCAA
GACTCTTGggtaatttttatcaaaacactATGGCTGGGACAGCTTGTGTC
ATTGGGGCTGGAATGTCAGGTCTAGCAGCCACAAAATGTTTGATTGATGC
TGGATTCGAGGTGACTTGTTATGAGCGAGACCGATTTGTGGGAGGAAGAT
GGAATAACGAGAACACAAACCCTATCCCAAGATCAACTGTCACAAACCTA
CCAAATTACATGTCATGTTTTTCAGACTTTCCAATGAAAAAGGGAACACC
ACTTTATTTCTCTGCAAATATCTATGCTGAGTATTTTCAAGATTATGCTG
AAAACTTTTGTCTTTTGCCTCATATAAATTTTGAGCACAAGGTTTTGAAA
GTTGAGTTTATGAATTGCCCTAAAAATGGATGGAAAGTGAATTTTAAGAA
TAATGAAGGAGAAGACAATACgaaattatttgattttatGGTGATTTCTT
CAGGATTTTATGTTCTTCCGTACATACCAGAAAAGATAGCTTCAGCTATA
AAAGGATTCGCTGGGAATATCATCCATAGTAAAGATTTCAAAGATGCAGA
AGGTTTTAGGGATAAGAACATTGTTGTTTCTGGTTTAGGAAATACAGGAG
GTAAGATGACAAATCTTTATCAATTtgatttattagttttttcagtCTAA
ATCTATAATAATCCCCCCTCCCAGTGGTAactcaatcacgatcacgcaaa
tcagCCAAAAAAATGAACAATCACGCATCCCCAAATCACGTATCatggct
caaaaatctttcaaatcacgatcataTTTTGACTTCTCATCATGCAATCA
CGAAGAAAATATTTCCAGATCATGTGATCACGCTGCAAAAAAGTCCCTAC
ACGTCATTACGAAAACCGCTTGGAGGCCCCTATAATTtgacgtcatttaa
aaaaagtaagatAAGATATTCATATTTGAGTGGCTTAAATTAAACTACAT
GTGGTATACATATGTACTATTCTTTTTCAAAGGGACTCAGATTACCAAAA
ACTTCCAATCCCAGTTTCATTTTTCACTAGAACCATAGAACAAAATCATG
CAGTTTTTGTCTAAATCTTctgttttttgaaagaaaaattaaaagtctac
aggttttataatttttgacgATGACAGGTCTGCTACTGATTCCATtttca
gtagcgtagacaggaaggacgcaaaatttgtgtaggagagcagacttTTA
TGACACGGTAATTAATTATTCATGACATAAAAAGATAATttctgtgtcat
aaaaatctgctctcctacacaaattttgcgcccctcttgtctaTGCTACT
GAACTTGTCTTTTACGGGCCAAATTCTTTTTTAACCTTCTCAAATTGTGC
CTCAAAATTTTTGACCTCAACCCAATTCTTTCTTTGAGCCCTCACGGTAC
ACTTTCAAAGGACTGAAAGATCAACTCACAGCATATATGTCACTTTTACC
TTTTAAACATAATGCTTAAGTGAGTTTGAAGGGGTCTACAATAGAAATAC
TGGAAATTTCTTTCTCATCAACCGAATTGGCATTATTATACATTTTCATT
CATTGGAATTATTTGTATTATAGGTGATATTTCAGTGGAGAGCTCTAAAT
TCTCTAAGAGTACTTGTTTATCAACTTCTCGAGGGAGTTACATAATCAGT
CGAATCATAAATAATGGTACTATACCAATATCGGCGTCATTGAACAGACT
TTCTGCATATACTCCATCATGGTTGATGAAAtttattaaagaaaatatta
tacAGAAATGGTCAAATCACGCTGGTGATATGGAGCGATGGAATTTGAAA
CCTAAAAATACGCTTAGTGTTATAATTAACGACGAGCTTCCATACCGTGT
CGCTTTTGGTAAAGTGAAAATCAGGAAAGAAATCATTAAAACTGAAGGAA
GGTCTGTTTATTTCAATGATGGTCAAGTTCAAGAGGATGTCGATACCATT
GTGTTATGTACAGGCTACACACGTGAATACCCATTTCTCGACGAAACTAT
ATTGAAGCCTCAACGTAAGGGTAAATTTTTACCACTTTATAAAGGCATGT
TTCCTGTACAGCATAACGAATGTTTAGCCTTTGTTGGTATGTTTTCCATC
TTTAATTCTGTTGCCATTGGTGTCGAGATGCAGTCTAGATTCATTGCTGA
ACGATTCAAAAGGAATATAAAGTTACCAAAAGAGGAAGAAATGGCGAAAG
AAATTCAAAGTCATCTTCAAATGTTTGATGATCAATTTAAAGGAGAAGCT
AAAGAGTTAAACCTGGTAAGTCATTCGAATTTGTTGTTAATAAACTTACT
TATATTTTCCTATGATTGACTAACTCCCCatattacacccctgtttcacg
gggaaaaatattttaaaggtattgttttttatgatatagaaatGAGATGC
GCCTCTATGCTGACAGAgcagaataaacaaaagaatttctcaaaaacttt
tcattagATGGGCGGAATTATCTCGGCGTAATGATATATGGTCGAAGATG
TCAGGAGAGAGAAAAACTTTtcctttttgcttaaaaaatactgTGTAGGC
AAATGTAAACGAATGTTCTGTGTTCTTTAGCTTTGAACAATAAAGTAGCA
GAGTGGCATATCAATGCTTGATCAATCaacatttttaagattgttcGAAC
AAAAGGTTTACATAATTAGATAAAGTGAATAAATAGAATCACAAAGTGCt
caagaaaatatcaaaaaacaaaGAACTAACTTGCAATTACAACATAATTA
AATATCACTTAATCCTTCCTATGGCTCTTTTCAGATAATGGATCCTTGGG
CTTACTATAACGAGCTTGCTGATCAGATAGGATGTCGCCCTTCCATACTG
CAGATTATGTTCTCTGATCCTATATTGTTTTGGCATTTATGGTCAAGATA
TAGTTTTCATGAATTTCGTTTATATGGCCCAAACAAATGGAATGGTGCCA
GAGATGCTATTATTAACTCTGATGAACTGAGATATAGCTTTTTTAAGCCT
TCATAACACAAGGGGTTCTAAATCAGcgtttcattattttttaagcTTAC
GGTATTTCTTTAACccatttaattttttgttatattttttagcTTTGTTT
TTCATTGTGTTTGTGAGATATTAACTATATAATATAAGTCACATTAATAT
TTTGCAATTGACTAGAGTGTAATTGAAGTTATATCAAATCTCAGGTTCAA
TCGATTTGAGGCTCTATAAAATCTTTATTcttacaagcttctgattgcGC
GGAAAGGAATTAGACTTATGAGCTAttaacacacccctgtctcaatgaaC
CCGTGAAATTTTCAACACCACCCAGTTACTACtatggaaaaaagtgtttt
tttatcGGGTTTGAATTTAATATCTATGAAACATGAAACTCATCGGAGTG
TCAGAACTTTCAACTCAATTTTCACTGGAGTAAAATTCACTTTCATATAT
TAGTGAGTCTGGTTTTACTAGAATTCGTTAAAATGCTATTTTTCTCCGAT
CGGGTGAATCTGACCGGGACACTGGTACAGGGCTGT Coding sequence (CDS) from alignment at sc0000075:106106..109691+ >TCONS_00007244 ID=TCONS_00007244|Name=TCONS_00007244|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at sc0000075:106106..109691+ (Clytia hemisphaerica)
ATTGCTCTTATTCTTCGGCGTGCATGCTGTCGTTGCTGTTTTGATTCAAG
ACTCTTGggtaatttttatcaaaacactATGGCTGGGACAGCTTGTGTCA
TTGGGGCTGGAATGTCAGGTCTAGCAGCCACAAAATGTTTGATTGATGCT
GGATTCGAGGTGACTTGTTATGAGCGAGACCGATTTGTGGGAGGAAGATG
GAATAACGAGAACACAAACCCTATCCCAAGATCAACTGTCACAAACCTAC
CAAATTACATGTCATGTTTTTCAGACTTTCCAATGAAAAAGGGAACACCA
CTTTATTTCTCTGCAAATATCTATGCTGAGTATTTTCAAGATTATGCTGA
AAACTTTTGTCTTTTGCCTCATATAAATTTTGAGCACAAGGTTTTGAAAG
TTGAGTTTATGAATTGCCCTAAAAATGGATGGAAAGTGAATTTTAAGAAT
AATGAAGGAGAAGACAATACgaaattatttgattttatGGTGATTTCTTC
AGGATTTTATGTTCTTCCGTACATACCAGAAAAGATAGCTTCAGCTATAA
AAGGATTCGCTGGGAATATCATCCATAGTAAAGATTTCAAAGATGCAGAA
GGTTTTAGGGATAAGAACATTGTTGTTTCTGGTTTAGGAAATACAGGAGG
TGATATTTCAGTGGAGAGCTCTAAATTCTCTAAGAGTACTTGTTTATCAA
CTTCTCGAGGGAGTTACATAATCAGTCGAATCATAAATAATGGTACTATA
CCAATATCGGCGTCATTGAACAGACTTTCTGCATATACTCCATCATGGTT
GATGAAAtttattaaagaaaatattatacAGAAATGGTCAAATCACGCTG
GTGATATGGAGCGATGGAATTTGAAACCTAAAAATACGCTTAGTGTTATA
ATTAACGACGAGCTTCCATACCGTGTCGCTTTTGGTAAAGTGAAAATCAG
GAAAGAAATCATTAAAACTGAAGGAAGGTCTGTTTATTTCAATGATGGTC
AAGTTCAAGAGGATGTCGATACCATTGTGTTATGTACAGGCTACACACGT
GAATACCCATTTCTCGACGAAACTATATTGAAGCCTCAACGTAAGGGTAA
ATTTTTACCACTTTATAAAGGCATGTTTCCTGTACAGCATAACGAATGTT
TAGCCTTTGTTGGTATGTTTTCCATCTTTAATTCTGTTGCCATTGGTGTC
GAGATGCAGTCTAGATTCATTGCTGAACGATTCAAAAGGAATATAAAGTT
ACCAAAAGAGGAAGAAATGGCGAAAGAAATTCAAAGTCATCTTCAAATGT
TTGATGATCAATTTAAAGGAGAAGCTAAAGAGTTAAACCTGATAATGGAT
CCTTGGGCTTACTATAACGAGCTTGCTGATCAGATAGGATGTCGCCCTTC
CATACTGCAGATTATGTTCTCTGATCCTATATTGTTTTGGCATTTATGGT
CAAGATATAGTTTTCATGAATTTCGTTTATATGGCCCAAACAAATGGAAT
GGTGCCAGAGATGCTATTATTAACTCTGATGAACTGAGATATAGCTTTTT
TAAGCCTTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007244-exon-sc0000075-1491911889:106106..106755 | TCONS_00007244-exon-sc0000075-1491911889:106106..106755 | Clytia hemisphaerica | exon |
| TCONS_00007244-exon-sc0000075-1510915933:106106..106755 | TCONS_00007244-exon-sc0000075-1510915933:106106..106755 | Clytia hemisphaerica | exon |
| TCONS_00007244-exon-sc0000075-1575043694:106106..106755 | TCONS_00007244-exon-sc0000075-1575043694:106106..106755 | Clytia hemisphaerica | exon |
| TCONS_00007244-exon-sc0000075-1491911889:107729..108420 | TCONS_00007244-exon-sc0000075-1491911889:107729..108420 | Clytia hemisphaerica | exon |
| TCONS_00007244-exon-sc0000075-1510915933:107729..108420 | TCONS_00007244-exon-sc0000075-1510915933:107729..108420 | Clytia hemisphaerica | exon |
| TCONS_00007244-exon-sc0000075-1575043694:107729..108420 | TCONS_00007244-exon-sc0000075-1575043694:107729..108420 | Clytia hemisphaerica | exon |
| TCONS_00007244-exon-sc0000075-1491911889:108940..109691 | TCONS_00007244-exon-sc0000075-1491911889:108940..109691 | Clytia hemisphaerica | exon |
| TCONS_00007244-exon-sc0000075-1510915933:108940..109691 | TCONS_00007244-exon-sc0000075-1510915933:108940..109691 | Clytia hemisphaerica | exon |
| TCONS_00007244-exon-sc0000075-1575043694:108940..109691 | TCONS_00007244-exon-sc0000075-1575043694:108940..109691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:106106..109691 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004499 | N,N-dimethylaniline monooxygenase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0050661 | NADP binding |
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
| molecular_function |
GO:0050661 |
NADP binding |
| molecular_function |
GO:0004499 |
N,N-dimethylaniline monooxygenase activity |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
BLAST of TCONS_00007244 vs. Swiss-Prot (Human)
Match: FMO2 (Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Homo sapiens GN=FMO2 PE=1 SV=4) HSP 1 Score: 271.552 bits (693), Expect = 3.652e-82 Identity = 164/474 (34.60%), Postives = 259/474 (54.64%), Query Frame = 2
Query: 80 MAGTACVIGAGMSGLAATKCLIDAGFEVTCYERDRFVGGRWN-NENTN----PIPRSTVTNLPNYMSCFSDFPMKKGTPLYFSANIYAEYFQDYAENFCLLPHINFEHKVLKVEFMNCP----KNGWKVNFKNNEGEDNTKLFDFMVISSGFYVLPYIPEKIASAIKGFAGNIIHSKDFKDAEGFRDKNIVVSGLGNTGGDISVESSKFSKSTCLSTSRGSYIISRIINNGTIPISASLNR----LSAYTPSWLMKFIKENIIQKWSNHAGDMERWNLKPKNTLSV---IINDELPYRVAFGKVKIRKEIIKTEGRSVYFNDGQVQEDVDTIVLCTGYTREYPFLDETILKPQRKGKFLPLYKGMFPVQHNE-CLAFVGMFSIFNSVAIGVEMQSRFIAERFKRNIKLPKEEEMAKEIQSHLQMFDDQFKGEAKELNLIMDPWAYYNELADQIGCRPSILQIMFSDPILFWHLW 1450
MA VIGAG+SGL + KC +D G E TC+ER +GG W EN I +S VTN MSCFSDFPM + P + + EYF+ +A+ F LL +I F+ VL V CP WKV ++N G++ + +FD +++ SG ++LP+IP K ++ F G HS+ +K +GF K I+V G+GN+G DI+VE SK + +ST G++++SRI +G S R L P +K++ E + +W NH E + L+P+N + ++ND++P R+ G +K++ + + S F DG V+E++D I+ TGY+ +PFL+++++K + + LYK +FP ++ LA +G+ S+ E+Q+R++ FK LP E M +I + D F GE++ L + Y +ELA +IG +P ++F DP L L+
Sbjct: 1 MAKKVAVIGAGVSGLISLKCCVDEGLEPTCFERTEDIGGVWRFKENVEDGRASIYQSVVTNTSKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVLSVR--KCPDFSSSGQWKVVTQSN-GKEQSAVFDAVMVCSGHHILPHIPLKSFPGMERFKGQYFHSRQYKHPDGFEGKRILVIGMGNSGSDIAVELSKNAAQVFISTRHGTWVMSRISEDGYPWDSVFHTRFRSMLRNVLPRTAVKWMIEQQMNRWFNH----ENYGLEPQNKYIMKEPVLNDDVPSRLLCGAIKVKSTVKELTETSAIFEDGTVEENIDVIIFATGYSFSFPFLEDSLVKVE--NNMVSLYKYIFPAHLDKSTLACIGLIQPLGSIFPTAELQARWVTRVFKGLCSLPSERTMMMDIIKRNEKRIDLF-GESQSQTLQTNYVDYLDELALEIGAKPDFCSLLFKDPKLAVRLY 464
The following BLAST results are available for this feature:
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