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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007245 ID=TCONS_00007245|Name=TCONS_00007245|organism=Clytia hemisphaerica|type=transcript|length=4466bpRun BLAST on NCBI protein sequence of TCONS_00007245-protein >TCONS_00007245-protein ID=TCONS_00007245-protein|Name=TCONS_00007245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1105bp MESKTAVRTQSLKRGQLHPNTPLEENPLSIEYFGNMLIRKQYYGLIERPNRun BLAST on NCBI transcript from alignment at sc0000075:141318..162247+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007245 ID=TCONS_00007245|Name=TCONS_00007245|organism=Clytia hemisphaerica|type=transcript|length=20930bp|location=Sequence derived from alignment at sc0000075:141318..162247+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:141318..162247+ >TCONS_00007245 ID=TCONS_00007245|Name=TCONS_00007245|organism=Clytia hemisphaerica|type=CDS|length=3318bp|location=Sequence derived from alignment at sc0000075:141318..162247+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007245 vs. Swiss-Prot (Human)
Match: GARL3 (GTPase-activating Rap/Ran-GAP domain-like protein 3 OS=Homo sapiens GN=GARNL3 PE=2 SV=2) HSP 1 Score: 588.956 bits (1517), Expect = 0.000e+0 Identity = 333/771 (43.19%), Postives = 471/771 (61.09%), Query Frame = 1
Query: 415 KQYYGLIERPNTSTDEENNPLARKQSRFRVEPSNGVSDDDNNQLI-VRSPSLAKLENPEFQTRWYFKFFLGTVHNNYAFLDNTKEPRALSVCLTDAENHGIQQYRAILWQKSGCRRICFPSIPNKTFNPREVLSYFGMEKIEKHPREIIAPXXXXXXXXXXXXXGSVNFKFGVIYAKKGQRTDDEMFGNVKGSDEFVRFLNVLGDTIDLKGWTGYRGGLDVKDNMTGVHSVYTMYEGHEVMFHVSVMLPYSKDT-QQVERKRHIGNDIAVIVFVDGEPDEELSFKPSSVRTKFTHVFAVIRYSKRTQSYYLTVFTEENVPAYGPPIPLPAKFTNPQEFRSFLITKLMNGEKAAYVSPVFSNKRQRTLESLISGLQNDQWLKPEKFGLKR---------AVSHAVTNRENKRA-FLELGQTLKVNKIMQGAAPTSVNNVGGLLALKNTPWEPHAVLSNLNRPIICGDNIGNKLLVSCDVGIYLVSEHGARL-VFDRSMTACQLSVVEDYGFIMVRIR--KHGRIYVLPLSLLT---EDRQVPFCRRDCAQFYLKKSKGSHLFSHSRQESPYLVVAIAVGKRLSIYKWAQNG--------------------FKKHTDFVVTETPITLTIIHDAKDKL--LLCVGLRHRFDIVNVQTKQVTLLKNIVTYRKPKIVSALDIFDEDNPELLLTYSHSSVFVR---------LRDNITEIVSFFWNNAPKDIVCAFPYILGFSENSIEIRLMVNGNLVHTHCVPHMKLITAKNDIY 2580
+++YG +E +S + + ++ RFRVE NG SD++ L + LENPE+ TRWYFK+FLG VH NY D K P LSV L+D N + QYRAILW+K+G ++IC P P KT + + +LS ++K EK PREI PE+QK+LLVLEEQEGSVNFKFGV++AK GQ TDDEMF N GS+ F +FLN+LGDTI LKGWTGYRGGLD K++ TG+HSVYT+Y+GHE+MFHVS MLPYSK+ QQVERKRHIGNDI IVF +GE + +FKPS +R+ FTH+FA++RY+++ +Y L +F+EE+VP +GPP+P P FT+ QEFR FL+ KL+NGEKA +P F+ KR+RTL+ LI L D K L R + A E ++A F+ +GQ LK+ I++G AP+S+ G K PWEP SN +C D G LLVS D G+ LV + + VFDR++ Q+ V+E +++R K R++V LS L E +Q R DC + L+K+KG HL++ + S L + +A+ +L + N F+ + ++++P+ +T++ ++ L+CV RH+FD+VN T + L ++ R V+A+D++++ LLL Y++S ++ + L F WN AP IVCAFPY+L F+ +S+EIRL+VNGNLVHT VP ++L+ +++DIY
Sbjct: 40 RKHYGSVELLISS---DADGAIQRAGRFRVE--NGSSDENATALPGTWRRTDVHLENPEYHTRWYFKYFLGQVHQNYIGNDAEKSPFFLSVTLSDQNNQRVPQYRAILWRKTGTQKICLPYSPTKTLSVKSILSAMNLDKFEKGPREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEPFQKFLNLLGDTITLKGWTGYRGGLDTKNDTTGIHSVYTVYQGHEIMFHVSTMLPYSKENKQQVERKRHIGNDIVTIVFQEGE-ESSPAFKPSMIRSHFTHIFALVRYNQQNDNYRLKIFSEESVPLFGPPLPTPPVFTDHQEFRDFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLHQDLMPDLHKNMLNRRSFSDVLPESPKSARKKEEARQAEFVRIGQALKLKSIVRGDAPSSLAASG---ICKKEPWEPQCFCSNFPHEAVCADPWGQALLVSTDAGVLLVDDDLPSVPVFDRTLPVKQMHVLETLDLLVLRADKGKDARLFVFRLSALQKGLEGKQAGKSRSDCRENKLEKTKGCHLYAINTHHSRELRIVVAIRNKLLLITRKHNKPSGVTSTSLLSPLSESPVEEFQYIREICLSDSPMVMTLVDGPAEESDNLICVAYRHQFDVVNESTGEAFRLHHVEANRV-NFVAAIDVYEDGEAGLLLCYNYSCIYKKVCPFNGGSFLVQPSASDFQFCWNQAPYAIVCAFPYLLAFTTDSMEIRLVVNGNLVHTAVVPQLQLVASRSDIY 800 The following BLAST results are available for this feature:
BLAST of TCONS_00007245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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