|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007251 ID=TCONS_00007251|Name=TCONS_00007251|organism=Clytia hemisphaerica|type=transcript|length=2604bp
CGGGAAATTTCGAACGATCtgtttgatttttcctttagAACTTTATGTAC
GCTGTATAAACAGATAAACAGGCTAATAAGAGGttgatttgatttgaata
aATAATTGCCATGGGGAAAAGAAAGTCTTCAGGGAAAGATGACAACACAA
AAGGAAcatgtaaaaagaaaacaaagaagattGGAAGCGAGGAGCAAAAG
ATACCACCAAAAGATAAAGATGGATCTCAAGAATCACAAGACTCTTCGGA
TGTCAGAATCGAAAATAGTTCTGCAAAAACAGTAACAGAAACATTGGCTC
TCTCAACTTCTACACTTTCCAACGAGAAATGCAACTCAGATGAAAACTTG
AAAGTCGTAGTTGAAAAACTTCAGAATGTTGCTGGAAAAGATGTCAATGA
GAAGATGGCAAATGACCAAACAGATAATCATACTGAAATCGAAGACGAGC
CAAAATTAGAACCGAGAGAACagTTGGAGGCTGGGCCAGACGAACGACTT
GAGCGAGAATCATCATTAAAGGCACACTCAGAAGAAAAGGGGAAGCTTGA
TTTTCAGGAAATCAATGAAATGCAAGAAGAAAAGCCAGACGAAGGTGATC
AGTTATCAAAGAGCGATTATCTGAGAGAATCTCCCAAAAGTAACGAAACC
CAAGTCTCCAAAGAAATGGTACAAATGGAGACGGGCCCTTCAGCTATCGT
CGAAAAACAAAAATCCATGGATGAAAAGTCTACAAATGATCCAATCCAAG
AAGAATTAGATGCTAATGAAAAGGTTGTAGAGGAATCTGAAGTAGACGAA
AAGACCCAAGAACAGTTAGAAGCAACTGACTCGCAAATTTGTACCCTTCT
TGGTGGCATAGATATGCAGGAGTCAGCAAAAAGTAATCACTATCTAAAGG
AAAATTTGGGAATCGAATGTGTTGATGAAAAAGTTGGCAATTTATTGGGT
CATTTATCTAGCATGAAccgAGTGATTATGGATGCAAAAAGAGATTTGGC
ATCAATGAGATTGAAAATCAACCAAGCGattaaatcatcaaaaaacactt
gacaaaaacaaaaacaaagtatATTACCAGTTTTTATATAAATGTGGTTT
CTTTTATATATCACATTATGAAAATACGTAGGTGACTATAATTATGTACA
TTGGGATGAAGTTAAAAAGTTTTATGTTTGCTGCTATATACACTAAAGTC
TTATCATGTAAATACATCTTCAAATATAAATGCTAAATAAATGCTTTATT
TCTTATTTCTCTATATCAAATAATTTTGAATTGGAATAATTAGTCAAAAT
TTGCTtgacataaaatataaaatatatacaaaatattaaccaaaacaaaa
caattaaattatgaaattgtaaaAACTTCAAGGAAATTTGACTATGTTTC
TCATAAAACTTTCAGTATTGAATTCAAAGtataagtggattaattttcgc
gagacttAACTTTGctaactcgcgaaattaaaccCACACACCAAATCAGA
CTAGCaacttaaaataataaaatagttTAAAAGATTTACTATTTCGGCGT
TTTCAAGAATACTTTCAATAAATTTTAGGCTTATTCGTgaatttaaaaac
actaaaaatatttcatttaatggattttcggaattttcGGAATTTCTCTA
AAATTATGCTTGGGATATAAGCATCCTTATACCGTAAGTCCtcaaataag
cgccccgctcgaataagcccCCCCCCTTGAATTgaaggggcgcttattcg
aatatgttattgattgaataagatattgagtagatacttgtgtcttaaaa
agaaagaaagcgattaagaataaaatgatagaaattgtcaattggatttt
tccaatttttcttttattcatccttttttgaaaaatcaaccctttgaaGC
AGTTAAAtttaagcagattccgaatttgttgatatacgaatttctgaaat
aaaaaaataagtgcccgctcgaataagcgccccccttagagcctgaaaaa
ttaaataagcgcccgggcgcttattcgagggtTTACGGTAAGCCCTGGAC
CTGAGCATCTCCGagcctgttttcaaattttgtatgcttataaaaaacaa
tataATCTAAATAAAACACTGCAAAAGAACGACTTTTCTCTACGATATCA
ATTTTGGCTTAAAAACTTAAAGCATGCATTATTTTTTTAGCTAAAGAACA
ACCAAACTGCAACTTTTTTATTTGAGTTACAAGGCTTTAGTCATAGGAAA
CTATAaagttttataataaaaaatcgtaaaaacttggCGTTAAATCATCG
ATGAAACTGAACACCAACAAAAATTTACCATTCATTTATAAtaaaaagca
atgaaaataacttAACGAACTTCCATACTTTTAGGTACCCTGTGAAGGAA
TCGGGGGTCGgcagatttcaaatttcaatagacggggggttgaaaaattt
atttcgaaGGTTCGGGGGGAGGAGttggaaaaatcgaaaaataaatcctt
aaggtggtagtctactgagaaatggaaaaagtcatttttttacttttttt
gtaataacttttgaaatatttaagatatctcaatgaaactttccacaatg
gTAG Run BLAST on NCBI protein sequence of TCONS_00007251-protein >TCONS_00007251-protein ID=TCONS_00007251-protein|Name=TCONS_00007251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MGKRKSSGKDDNTKGTCKKKTKKIGSEEQKIPPKDKDGSQESQDSSDVRI
ENSSAKTVTETLALSTSTLSNEKCNSDENLKVVVEKLQNVAGKDVNEKMA
NDQTDNHTEIEDEPKLEPREQLEAGPDERLERESSLKAHSEEKGKLDFQE
INEMQEEKPDEGDQLSKSDYLRESPKSNETQVSKEMVQMETGPSAIVEKQ
KSMDEKSTNDPIQEELDANEKVVEESEVDEKTQEQLEATDSQICTLLGGI
DMQESAKSNHYLKENLGIECVDEKVGNLLGHLSSMNRVIMDAKRDLASMR
LKINQAIKSSKNT Run BLAST on NCBI transcript from alignment at sc0000075:209301..214462+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007251 ID=TCONS_00007251|Name=TCONS_00007251|organism=Clytia hemisphaerica|type=transcript|length=5162bp|location=Sequence derived from alignment at sc0000075:209301..214462+ (Clytia hemisphaerica)
CGGGAAATTTCGAACGATCtgtttgatttttcctttagAACTTTATGTAC
GCTGTATAAACAGATAAACAGGCTAATAAGAGGttgatttgatttgaata
aATAATTGCCATGGGGAAAAGAAAGTCTTCAGGGAAAGATGACAACACAA
AAGGAAcatgtaaaaagaaaacaaagaagattGGAAGCGAGGAGCAAAAG
ATACCACCAAAAGATAAAGATGGATCTCAAGAATCACAAGACTCTTCGGA
TGTCAGAATCGAAAATAGTTCTGCAAAAACAGTAACAGAAACATTGGCTC
TCTCAACTTCTACACTTTCCAACGAGAAATGCAACTCAGATGAAAACTTG
AAAGTCGTAGTTGAAAAACTTCAGAATGTTGCTGGAAAAGATGTCAATGA
GAAGATGGCAAATGACCAAACAGATAATCATACTGAAATCGAAGACGAGC
CAAAATTAGAACCGAGAGAACaggtattttccaaaaaaatattttattct
aaattgAAATCCTCAAAACTCCTGAAACTCCTTATATTGTTGTTAGAATT
ATTGTCATGATCGAAATGAAAACAATTCTTTGTTTGATCAATAGATATTC
AAAAGCAGCCAACGACGGATTTCTCAAATGTCTGTACTAATTTTCCAGTA
GATATAATTTTAGGGAGAAAATCCAGGAACATTTTGCTCAGCGAACAGAC
CTGAAAATCTAGGAGGAtgtgaattttttcaaaaggacAGGCTGGACAGG
CaccaatttcattaaaataccTGTTCGGAAAATCCAGGAGCAATCATGAA
AAAGAACACATATATTTTTTCCAGTAAGAACATTTTGGgaaacaaaaaca
gaacaaaattcatttttttctagaatCAATTTGTATAAAACACATGCATT
TTTTCAGGAGCCCGAATTTCCTCATCGAACAGATGTACTTTTCGACTTTT
CCAGGAACCAAACGTCAAAAAAACAGATGGTGTTATTTCCAGCCCTGGGA
ACGCTTCTGAACAGTTATTTTGTGTTTTCTAGCCGTTGGCTGCTCTTCTG
CTCTCGGATATTAACACCCACTAAAAATTataatgattttttaaaaagaa
attaagttATTTTAAGTGACGAAAATCCGCAAGAAACTTTGAATCAATCC
CACCATCATAGTTATATCTTTTCACAGTCCTACGATTTTTCGCTTCTAGT
TGGAGGCTGGGCCAGACGAACGACTTGAGCGAGAATCATCATTAAAGGCA
CACTCAGAAGAAAAGGGGAAGCTTGATTTTCAGGAAATCAATGAAATGCA
AGAAGAAAAGCCAGACGAAGGTGATCAGTTATCAAAGAGCGATTATCTGA
GAGAATCTCCCAAAAGTAACGAAACCCAAGTCTCCAAAGAAATGGTACAA
ATGGAGACGGGCCCTTCAGCTATCGTCGAAAAACAAAAATCCATGGATGA
AAAGTCTACAAATGATCCAATCCAAGAAGAATTAGATGCTAATGAAAAGG
TTGTAGAGGAATCTGAAGTAGACGAAAAGACCCAAGAACAGTTAGAAGCA
ACTGACTCGCAAATTTGTACCCTTCTTGGTGGCATAGATATGCAGGAGTC
AGCAAAAAGTAATCACTATCTAAAGGAAAATTTGGGAATCGAATGTGTTG
ATGAAAAAGTTGGCAATTTATTGGGTCATTTATCTAGCATGAAGTGAGTT
TTCGAGTTATATGTgaaaaaagtacaaatttcaatACCTAATAGACAGGA
GGTTTGAAATAAGCGGGGTGGGtggaaaattctcaaaacttatAAATGgg
agttggaataaaaatgtcgtAGCTggcaaaaaattcgaaaattgatTAGC
AAGGGACGCTTATTAACTTATTAGGTACTCGAGAGTATAAAAGGTACAAA
GAACCTTTTGACCCTTACTAgcaatagcgaggttaagcaagaagctatct
attacgtacggaatctattacgtgagtttttcGCGGGCTAGAACCTAAAT
CTCAAGGCTAACTCTGTCCCGTGTAATTTGACCTGTACGTCGTAGTTTGG
GGAGTGGATCTATTGCGCGAAAATCTCCAATCTCACGTAATAGATATCGA
TTAGGATATAAGCTGATCCAGGGGAAATTTACTTTACGGAGATTGGGCTG
AATCGTTTAGGATCAAAAATCAcccgaaaaaaatgtaaacagaaaagaaa
ctttggtaatttttttttgatttctgacaAGTTTGAGCTGAGAAAACTAA
CAGAAGAAATGTTTTGAATCTCATCTGTGGAAACTATGATGCATAAAAAC
AAAGTGAAAGGATTTATTGCACAAAAGAAGGTCAAGATGTAAGTGTAATA
AAATAATCTTTGCtgactttttttatcaaaccaaaacaaacgaagtttct
ttctggttcttttgtttttcttctcttttttatcttgctttttatATGCT
CTCAAAGTCCAAATACATTCAAAGTAACCATTACAATGAACAGCATgtaa
ccatatttcttttcatgtttttcagtgtttcttTGGTGCCACCATCAAGT
GCGAAGAAGCCAAAGTTATAATGTCACCCGGGTGTCACCCACCCAAAGCA
ACAAACACGAAAAAGACTGCTCTGCCAAGCTCAAATAAATTTACCCTTCC
GTCCGAAGCATAACAGAAGAATTCTTTATTTATTGTTCCAATTTCAACTG
CTACAACTAACGTACAAATCAGACCTGATGTCACACAACCGCTGAACTTC
AAACCGttctcaaaaattatataaagctcTATCTTCTGGACAACCGCTAC
TGCTTTAAGTTCTCAATCCTTTACTNNNNNNTGGtttgcacactttttta
taagagtgttTTTATTGGTAATGCTAATGGTGAAGCATTCATATAGAAAT
GCAGCTAAATAAGGATGACAGACTGTACACTATGCTCTCTTacagattat
ttttttctttataaataaaGCAGTAATTTTTGATTGGTACCTATGTAAAC
TAGGAATGAAGTTATgaaattatatatatttttattgcaatgttaagaat
tcattgaaatgataagtcatagacatattttttgtttataacaatgttga
atgaaaatagTAAAAGTAATATAGAGAAAACTCTGACTATGCTTGtctag
ttttaatttttgtgaaaacattTGTCTTGGGAAAAAACTAAGTAGATTGA
GATTGAAAGTAAGGGGATTTTATAGACCAAACCACCAACAAGAAAgctgg
aaaagaaagaaagaaaaataaaattttttaagtTGGGGCCGAAAGTTAGA
TACGGAAAAATAAACATCACGTCATACGTAATAGATCGCCTTTTTTGCTT
AACCTCTTTTTTCTCTATGCCTTGAAGCTTTAGGAATCAGGCTAAAACGC
CTCGGATCCAGTctaaaaactcacgtaatagattccgtacgtaatagata
gcttcttgcttaacctcgctaatgtcaaaagaatatttcagaagtgcaaa
aattgacgaaaactttttttttcagccgAGTGATTATGGATGCAAAAAGA
GATTTGGCATCAATGAGATTGAAAATCAACCAAGCGattaaatcatcaaa
aaacacttgacaaaaacaaaaacaaagtatATTACCAGTTTTTATATAAA
TGTGGTTTCTTTTATATATCACATTATGAAAATACGTAGGTGACTATAAT
TATGTACATTGGGATGAAGTTAAAAAGTTTTATGTTTGCTGCTATATACA
CTAAAGTCTTATCATGTAAATACATCTTCAAATATAAATGCTAAATAAAT
GCTTTATTTCTTATTTCTCTATATCAAATAATTTTGAATTGGAATAATTA
GTCAAAATTTGCTtgacataaaatataaaatatatacaaaatattaacca
aaacaaaacaattaaattatgaaattgtaaaAACTTCAAGGAAATTTGAC
TATGTTTCTCATAAAACTTTCAGTATTGAATTCAAAGtataagtggatta
attttcgcgagacttAACTTTGctaactcgcgaaattaaaccCACACACC
AAATCAGACTAGCaacttaaaataataaaatagttTAAAAGATTTACTAT
TTCGGCGTTTTCAAGAATACTTTCAATAAATTTTAGGCTTATTCGTgaat
ttaaaaacactaaaaatatttcatttaatggattttcggaattttcGGAA
TTTCTCTAAAATTATGCTTGGGATATAAGCATCCTTATACCGTAAGTCCt
caaataagcgccccgctcgaataagcccCCCCCCTTGAATTgaaggggcg
cttattcgaatatgttattgattgaataagatattgagtagatacttgtg
tcttaaaaagaaagaaagcgattaagaataaaatgatagaaattgtcaat
tggatttttccaatttttcttttattcatccttttttgaaaaatcaaccc
tttgaaGCAGTTAAAtttaagcagattccgaatttgttgatatacgaatt
tctgaaataaaaaaataagtgcccgctcgaataagcgccccccttagagc
ctgaaaaattaaataagcgcccgggcgcttattcgagggtTTACGGTAAG
CCCTGGACCTGAGCATCTCCGagcctgttttcaaattttgtatgcttata
aaaaacaatataATCTAAATAAAACACTGCAAAAGAACGACTTTTCTCTA
CGATATCAATTTTGGCTTAAAAACTTAAAGCATGCATTATTTTTTTAGCT
AAAGAACAACCAAACTGCAACTTTTTTATTTGAGTTACAAGGCTTTAGTC
ATAGGAAACTATAaagttttataataaaaaatcgtaaaaacttggCGTTA
AATCATCGATGAAACTGAACACCAACAAAAATTTACCATTCATTTATAAt
aaaaagcaatgaaaataacttAACGAACTTCCATACTTTTAGGTACCCTG
TGAAGGAATCGGGGGTCGgcagatttcaaatttcaatagacggggggttg
aaaaatttatttcgaaGGTTCGGGGGGAGGAGttggaaaaatcgaaaaat
aaatccttaaggtggtagtctactgagaaatggaaaaagtcattttttta
ctttttttgtaataacttttgaaatatttaagatatctcaatgaaacttt
ccacaatggTAG Coding sequence (CDS) from alignment at sc0000075:209301..214462+ >TCONS_00007251 ID=TCONS_00007251|Name=TCONS_00007251|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000075:209301..214462+ (Clytia hemisphaerica)
ATGGGGAAAAGAAAGTCTTCAGGGAAAGATGACAACACAAAAGGAAcatg
taaaaagaaaacaaagaagattGGAAGCGAGGAGCAAAAGATACCACCAA
AAGATAAAGATGGATCTCAAGAATCACAAGACTCTTCGGATGTCAGAATC
GAAAATAGTTCTGCAAAAACAGTAACAGAAACATTGGCTCTCTCAACTTC
TACACTTTCCAACGAGAAATGCAACTCAGATGAAAACTTGAAAGTCGTAG
TTGAAAAACTTCAGAATGTTGCTGGAAAAGATGTCAATGAGAAGATGGCA
AATGACCAAACAGATAATCATACTGAAATCGAAGACGAGCCAAAATTAGA
ACCGAGAGAACagTTGGAGGCTGGGCCAGACGAACGACTTGAGCGAGAAT
CATCATTAAAGGCACACTCAGAAGAAAAGGGGAAGCTTGATTTTCAGGAA
ATCAATGAAATGCAAGAAGAAAAGCCAGACGAAGGTGATCAGTTATCAAA
GAGCGATTATCTGAGAGAATCTCCCAAAAGTAACGAAACCCAAGTCTCCA
AAGAAATGGTACAAATGGAGACGGGCCCTTCAGCTATCGTCGAAAAACAA
AAATCCATGGATGAAAAGTCTACAAATGATCCAATCCAAGAAGAATTAGA
TGCTAATGAAAAGGTTGTAGAGGAATCTGAAGTAGACGAAAAGACCCAAG
AACAGTTAGAAGCAACTGACTCGCAAATTTGTACCCTTCTTGGTGGCATA
GATATGCAGGAGTCAGCAAAAAGTAATCACTATCTAAAGGAAAATTTGGG
AATCGAATGTGTTGATGAAAAAGTTGGCAATTTATTGGGTCATTTATCTA
GCATGAAccgAGTGATTATGGATGCAAAAAGAGATTTGGCATCAATGAGA
TTGAAAATCAACCAAGCGattaaatcatcaaaaaacacttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007251-exon-sc0000075-1491911889:209301..209773 | TCONS_00007251-exon-sc0000075-1491911889:209301..209773 | Clytia hemisphaerica | exon |
| TCONS_00007251-exon-sc0000075-1510915933:209301..209773 | TCONS_00007251-exon-sc0000075-1510915933:209301..209773 | Clytia hemisphaerica | exon |
| TCONS_00007251-exon-sc0000075-1575043694:209301..209773 | TCONS_00007251-exon-sc0000075-1575043694:209301..209773 | Clytia hemisphaerica | exon |
| TCONS_00007251-exon-sc0000075-1491911889:210500..210993 | TCONS_00007251-exon-sc0000075-1491911889:210500..210993 | Clytia hemisphaerica | exon |
| TCONS_00007251-exon-sc0000075-1510915933:210500..210993 | TCONS_00007251-exon-sc0000075-1510915933:210500..210993 | Clytia hemisphaerica | exon |
| TCONS_00007251-exon-sc0000075-1575043694:210500..210993 | TCONS_00007251-exon-sc0000075-1575043694:210500..210993 | Clytia hemisphaerica | exon |
| TCONS_00007251-exon-sc0000075-1491911889:212826..214462 | TCONS_00007251-exon-sc0000075-1491911889:212826..214462 | Clytia hemisphaerica | exon |
| TCONS_00007251-exon-sc0000075-1510915933:212826..214462 | TCONS_00007251-exon-sc0000075-1510915933:212826..214462 | Clytia hemisphaerica | exon |
| TCONS_00007251-exon-sc0000075-1575043694:212826..214462 | TCONS_00007251-exon-sc0000075-1575043694:212826..214462 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:209301..214462 + |
Blast
The following BLAST results are available for this feature:
|
