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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007252 ID=TCONS_00007252|Name=TCONS_00007252|organism=Clytia hemisphaerica|type=transcript|length=1437bpRun BLAST on NCBI protein sequence of TCONS_00007252-protein >TCONS_00007252-protein ID=TCONS_00007252-protein|Name=TCONS_00007252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp MTLNVDSPKVYTVQGVPISVTGIAQVKVQGQNEEMLHAACQQFLGKSEQERun BLAST on NCBI transcript from alignment at sc0000075:325611..332812+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007252 ID=TCONS_00007252|Name=TCONS_00007252|organism=Clytia hemisphaerica|type=transcript|length=7202bp|location=Sequence derived from alignment at sc0000075:325611..332812+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:325611..332812+ >TCONS_00007252 ID=TCONS_00007252|Name=TCONS_00007252|organism=Clytia hemisphaerica|type=CDS|length=13680bp|location=Sequence derived from alignment at sc0000075:325611..332812+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007252 vs. Swiss-Prot (Human)
Match: FLOT1 (Flotillin-1 OS=Homo sapiens GN=FLOT1 PE=1 SV=3) HSP 1 Score: 461.07 bits (1185), Expect = 1.261e-158 Identity = 248/412 (60.19%), Postives = 339/412 (82.28%), Query Frame = 2
Query: 170 PRHLSLGKGCGHERPLLISGGRTWVWHCFQKVQKIALNVMTLNVDSPKVYTVQGVPISVTGIAQVKVQGQNEEMLHAACQQFLGKSEQEIRKVALETLEGHQRAIMGTMTVEQIYQDRKMFSKSVFEVASSDLVHMGISVISYTLKDIRDEEGYLRSLGMQRVAEVQCEARIGQATATMQSGIKEAIAEEQRMKAEFVNKIEVARAERDFSLKKASYDQEVNTKKATSELAYDLQAAITKQQIKEENMNVKVIERSQQIKVQAEEIIRKEKELEANVRKPAEAQKYXXXXXXXXXXXXXXLXXXXXXXSIRVRGXXXXXXXXXXXXXXXXQMTKKADAWRDYQEAAMVDMLLETLPKVAAEIAAPLSKVKKVTMVSNGGADVGASKITGELLDIVIRMPQAMEQLTGVDITK 1405
P + G P++++GGR +V C Q++Q+I+LN +TLNV S KVYT GVPISVTGIAQVK+QGQN+EML AACQ FLGK+E EI +ALETLEGHQRAIM MTVE+IY+DR+ FS+ VF+VASSDLV+MGISV+SYTLKDI D++ YL SLG R A+VQ +ARIG+A A +GI+EA A+++++ A+++++IE+A+A+RD+ LKKA+YD EVNT++A ++LAY LQ A TKQQI+E+ + V+V+ER+QQ+ VQ +EI R+EKELEA VRKPAEA++YK E++AEA K+++I++AEAEA S+R+RGEAEAFAI A+A AEAEQM KKA+A++ YQEAA +DMLLE LP+VA EI+ PL+ K+T+VS+G +GA+K+TGE+LDI+ R+P+++E+LTGV I++
Sbjct: 7 PNEAMVVSGFCRSPPVMVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVYTRHGVPISVTGIAQVKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMTVEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDARIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQADLAYQLQVAKTKQQIEEQRVQVQVVERAQQVAVQEQEIARREKELEARVRKPAEAERYKLERLAEAEKSQLIMQAEAEAASVRMRGEAEAFAIGARARAEAEQMAKKAEAFQLYQEAAQLDMLLEKLPQVAEEISGPLTSANKITLVSSGSGTMGAAKVTGEVLDILTRLPESVERLTGVSISQ 418 The following BLAST results are available for this feature:
BLAST of TCONS_00007252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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