TCONS_00007257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007257
Unique NameTCONS_00007257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007257 ID=TCONS_00007257|Name=TCONS_00007257|organism=Clytia hemisphaerica|type=transcript|length=648bp
ACATACCTTTAGTAAACCACCACATGGGAGGGTCGATGATTCCATCACAA
ACGGAATGCTCAAGAAACACATTCAATGTGTAGGTCCCTTTAAAAGGTAT
CACAAACTCTGCTGAATACGAACCATTCAAATGATCAACAAAATAAATcg
cttttttaaatttatcattCGAGATGTAGGATCGCCAAAAATCACCTCCA
AtctttttccgatttttcaattcatcaaaAGTCTGTAAAATAACACGTCC
AGGTCGATCAGCACTGTTCGGTAATTCAATTTTGATCTCTGTTAAATCGG
CTTTAGTGCGAAGTGTCATGTTCTTGTTACCATTTTCCCAGCTTGTGTTA
TGACAAGGCTTCATTAGTCTTTCGTAAGATCGATACTGACATGTATTGTT
ATGTAAGAACCGAACCGGTTCAAGCATTGGTTTAATTCTTGGTTTCCGAT
AAACACGGCTATCCATTAAAGCATtctgtaatttaactaaaacatttacT
TTTCCTTTAATCTCCAATGTATTTATAAAGCTTCCTTGCCACGTGAGGAA
GACATACGCCCAAAATGGTATGGAACATATCAGCAGTAGAAGAAATGCTT
TTAGCTTGTTGTCTATAACCGCCATGGTTTAAGATATTTTCGACTCCT
Run BLAST on NCBI

transcript from alignment at sc0000075:383751..384517+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007257 ID=TCONS_00007257|Name=TCONS_00007257|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at sc0000075:383751..384517+ (Clytia hemisphaerica)
ACATACCTTTAGTAAACCACCACATGGGAGGGTCGATGATTCCATCACAA
ACGGAATGCTCAAGAAACACATTCAATGTGTAGGTCCCTTTAAAAGGTAT
CACAAACTCTGCTGAATACGAACCATTCAAATGATCAACAAAATAAATcg
cttttttaaatttatcattCGAGATGTAGGATCGCCAAAAATCACCTCCA
AtctttttccgatttttcaattcatcaaaAGTCTGTAAAATAACACGTCC
AGGTTGATCAGCACTGTTCGATAATTCAATTTTGATCTCTGTTAAATCGG
CTTTAGTGCGAAGTGTCATGTCCTTGTTACCATTTTCCCAGCTTGTGTTA
TGACAAGGCTTCATTAGTNAGGTCGATCAGCACTGTTCGGTAATTCAATT
TTGATCTCTGTTAAATCGGCTTTAGTGCGAAGTGTCATGTTCTTGTTACC
ATTTTCCCAGCTTGTGTTATGACAAGGCTTCATTAGTCTTTCGTAAGATC
GATACTGACATGTATTGTTATGTAAGAACCGAACCGGTTCAAGCATTGGT
TTAATTCTTGGTTTCCGATAAACACGGCTATCCATTAAAGCATtctgtaa
tttaactaaaacatttacTTTTCCTTTAATCTCCAATGTATTTATAAAGC
TTCCTTGCCACGTGAGGAAGACATACGCCCAAAATGGTATGGAACATATC
AGCAGTAGAAGAAATGCTTTTAGCTTGTTGTCTATAACCGCCATGGTTTA
AGATATTTTCGACTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004077XLOC_004077Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007257-exon-sc0000075-1491911889:383751..384002TCONS_00007257-exon-sc0000075-1491911889:383751..384002Clytia hemisphaericaexon
TCONS_00007257-exon-sc0000075-1510915933:383751..384002TCONS_00007257-exon-sc0000075-1510915933:383751..384002Clytia hemisphaericaexon
TCONS_00007257-exon-sc0000075-1575043694:383751..384002TCONS_00007257-exon-sc0000075-1575043694:383751..384002Clytia hemisphaericaexon
TCONS_00007257-exon-sc0000075-1491911889:384122..384517TCONS_00007257-exon-sc0000075-1491911889:384122..384517Clytia hemisphaericaexon
TCONS_00007257-exon-sc0000075-1510915933:384122..384517TCONS_00007257-exon-sc0000075-1510915933:384122..384517Clytia hemisphaericaexon
TCONS_00007257-exon-sc0000075-1575043694:384122..384517TCONS_00007257-exon-sc0000075-1575043694:384122..384517Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:383751..384517 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.10097e-09	0	0	0.363237	0.646729	0	2.36879	0.00420576	0	0	0	2.9897	1.0556e-09	2.97199	3.47047	0	2.91284	3.2495	2.03774	2.34866	3.53312e-06	0.909274	1.38339	9.05042	6.24946	0.199282	0.250025	3.49442	1.63906
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR014756Ig_E-set
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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