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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007260 ID=TCONS_00007260|Name=TCONS_00007260|organism=Clytia hemisphaerica|type=transcript|length=1645bp
cGTTTTTGATCAAATCTTTAATAATGTAAATTGGAAGAATTTCAATGATG
ATGgattttaaaatgtaaacaataaACAAACATGTCAATAATGAAGAGTA
TATTTTTGACACTTTGGATTTTGCAATTAGCAGAATGCAGATTCGGACTG
GTCAATAGTGGAGTCCGAGCATCTATCCAATCGACCATTCTCCAAAAGAA
GAAAGGAGCAAGTCATTGGTATGACAGTGTTACAGAACCTCTTTTTGATG
AAGGGAATGCCAATATTCATACTATGAGAGAAGGCCAGTTCATTGATGAA
ATACCTACCTCTAAATATTTCTCACATAAAACAAACTCAAATCTACTATC
ACGAAGACAAAAAGGTCCAATATTTCATCATGTCACACCACACATAAAAC
CATCATCTTCACATGTATCACGTGGCAGGTTTTTAACAAATCAGGAGCAA
TCACATGAGTCACGTGCCAAACTTTTGACCAATCACGGACCGTCTGAATA
CGAAACACCAATAACATATCAGCAAGTCGGTAAAGGCCTTCAAAAATCAT
TGCTGGGTCAGAAATGGCTGAAAGAGAACGACTTCAAATTATCGGATTTC
GGTCTTTCAGAGGACGCCCATTCAGCATTGGATGATGTCCCGGTTTATCC
AGTCGATGGTAGTGTAGAGGGAGCTTTAACAAAATCATATTCTAACAACC
TTTTATCAAGCCTTGGTGTAAACGAACCACAAATGTCATCCTTGGCTACA
CCCAAACAAATCAATGCTGCAGTCTCGTCCAATAAGCGTCACCATGCTAA
GAAACTCGattcaacaacaaacaaacatttagagaaaattctaaatttga
TATCTTTGGTGAAAGATTTTTCTCACACGTATGACCAAGAAAGAAAGTTG
GCTTCTACGTTGCACCACCAACGCCATTTGATGGTACCAGAGCTGCGTCC
ACCGGAAGTAATCACTAGCAGTGAACATGTAGCTGAAGAGGAAACAGCTG
CAAGTGATAGTGAAGCCAAATGGAAAGGTGACGTCATCCAAAATGCTGCG
AAACTCAAAATCAACAACGCTTATCATAAGAGTTTGAAAACAGCTCCAAT
ATTAGATCCTGATCTTCATCATTTAGTCACTGTTGATACAACTACGGGGG
AGATTTTTAACGAGCGAACTCTCCCTCGAGAGGCATTAGCCAAATTTGGT
TTAGGCAGTTCTCCAGTTATTAAAAAGACTTCTATGGGTTATGTGCCTAA
AAAAGTGAAACGTAAAACTACGGTATCGAAAGGTACACGGCGTGCTCACG
TTATAGTTACAAAACCTACTCCCCGTATTTTACGTAACATAACCAATAGA
CGTAAGACGTCGTTACGTGCTAAAGCTGCAAGAAAACTGACATCGAGAAA
CGAAATGATGACAGAAATTAGAAAGGACCTTTCTTTTGTCGATGATAAAC
AACTCCTGAAATTGGAAAATACTTTAGAAAGTATTAAGCGCCTTAAAAAG
ATCCATTGAGATTTATTTTATTAAAGTTTTTTATGTTAGTATATTTGTTG
TACATAATtaatatttttcgttttcaattttattttttttgaagtaTTGG
AAATTGCAACTTCATTCCTTACACCATTGACTATATTTTAATGAC Run BLAST on NCBI transcript from alignment at sc0000075:461265..463485+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007260 ID=TCONS_00007260|Name=TCONS_00007260|organism=Clytia hemisphaerica|type=transcript|length=2221bp|location=Sequence derived from alignment at sc0000075:461265..463485+ (Clytia hemisphaerica)
cGTTTTTGATCAAATCTTTAATAATGTAAATTGGAAGAATTTCAATGATG
ATGgattttaaaatgtaaacaataaACAAACATGTCAATAATGAAGAGTA
TATTTTTGACACTTTGGATTTTGCAATTAGCAGGTTAAATTATGTTTCCT
TTGTAATTTTCAACCTAGATATTGAAATagtaatacacatttttttataa
gaacaagcctTCGCTTGTTCTTGACTTcttgagatttaagcctaagaata
ttcttaacatgttcttattttcaccgtttcGTGAGCATTTtcgtccattt
ttctaagaaatcgggtgttttagagtccgcaaagccttcagatattctta
acttgctcttagtATTTTGGGCAGACCCATGTTCCTTTatagcatgttct
tataaaaaggattatctcgatagtttttgtttttcagattaagaatttga
atttgaagtaATTGTGGCTTTAAAAGTACAaggttactcttaggtgccaa
ataaccccccccccccccgcttgttaatttttcgatttttttccaccccc
ccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCTCGTTTATTTGG
CACCAAAGAGTAATCGAAAGTCTATTTGAGTAACCCAGTACTATTTTCTC
TTTATTCAGAATGCAGATTCGGACTGGTCAATAGTGGAGTCCGAGCATCT
ATCCAATCGACCATTCTCCAAAAGAAGAAAGGAGCAAGTCATTGGTATGA
CAGTGTTACAGAACCTCTTTTTGATGAAGGGAATGCCAATATTCATACTA
TGAGAGAAGGCCAGTTCATTGATGAAATACCTACCTCTAAATATTTCTCA
CATAAAACAAACTCAAATCTACTATCACGAAGACAAAAAGGTCCAATATT
TCATCATGTCACACCACACATAAAACCATCATCTTCACATGTATCACGTG
GCAGGTTTTTAACAAATCAGGAGCAATCACATGAGTCACGTGCCAAACTT
TTGACCAATCACGGACCGTCTGAATACGAAACACCAATAACATATCAGCA
AGTCGGTAAAGGCCTTCAAAAATCATTGCTGGGTCAGAAATGGCTGAAAG
AGAACGACTTCAAATTATCGGATTTCGGTCTTTCAGAGGACGCCCATTCA
GCATTGGATGATGTCCCGGTTTATCCAGTCGATGGTAGTGTAGAGGGAGC
TTTAACAAAATCATATTCTAACAACCTTTTATCAAGCCTTGGTGTAAACG
AACCACAAATGTCATCCTTGGCTACACCCAAACAAATCAATGCTGCAGTC
TCGTCCAATAAGCGTCACCATGCTAAGAAACTCGattcaacaacaaacaa
acatttagagaaaattctaaatttgaTATCTTTGGTGAAAGATTTTTCTC
ACACGTATGACCAAGAAAGAAAGTTGGCTTCTACGTTGCACCACCAACGC
CATTTGATGGTACCAGAGCTGCGTCCACCGGAAGTAATCACTAGCAGTGA
ACATGTAGCTGAAGAGGAAACAGCTGCAAGTGATAGTGAAGCCAAATGGA
AAGGTGACGTCATCCAAAATGCTGCGAAACTCAAAATCAACAACGCTTAT
CATAAGAGTTTGAAAACAGCTCCAATATTAGATCCTGATCTTCATCATTT
AGTCACTGTTGATACAACTACGGGGGAGATTTTTAACGAGCGAACTCTCC
CTCGAGAGGCATTAGCCAAATTTGGTTTAGGCAGTTCTCCAGTTATTAAA
AAGACTTCTATGGGTTATGTGCCTAAAAAAGTGAAACGTAAAACTACGGT
ATCGAAAGGTACACGGCGTGCTCACGTTATAGTTACAAAACCTACTCCCC
GTATTTTACGTAACATAACCAATAGACGTAAGACGTCGTTACGTGCTAAA
GCTGCAAGAAAACTGACATCGAGAAACGAAATGATGACAGAAATTAGAAA
GGACCTTTCTTTTGTCGATGATAAACAACTCCTGAAATTGGAAAATACTT
TAGAAAGTATTAAGCGCCTTAAAAAGATCCATTGAGATTTATTTTATTAA
AGTTTTTTATGTTAGTATATTTGTTGTACATAATtaatatttttcgtttt
caattttattttttttgaagtaTTGGAAATTGCAACTTCATTCCTTACAC
CATTGACTATATTTTAATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007260-exon-sc0000075-1491911889:461265..461397 | TCONS_00007260-exon-sc0000075-1491911889:461265..461397 | Clytia hemisphaerica | exon |
| TCONS_00007260-exon-sc0000075-1510915933:461265..461397 | TCONS_00007260-exon-sc0000075-1510915933:461265..461397 | Clytia hemisphaerica | exon |
| TCONS_00007260-exon-sc0000075-1575043694:461265..461397 | TCONS_00007260-exon-sc0000075-1575043694:461265..461397 | Clytia hemisphaerica | exon |
| TCONS_00007260-exon-sc0000075-1491911889:461974..463485 | TCONS_00007260-exon-sc0000075-1491911889:461974..463485 | Clytia hemisphaerica | exon |
| TCONS_00007260-exon-sc0000075-1510915933:461974..463485 | TCONS_00007260-exon-sc0000075-1510915933:461974..463485 | Clytia hemisphaerica | exon |
| TCONS_00007260-exon-sc0000075-1575043694:461974..463485 | TCONS_00007260-exon-sc0000075-1575043694:461974..463485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:461265..463485 + |
Blast
The following BLAST results are available for this feature:
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