TCONS_00007261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007261
Unique NameTCONS_00007261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007261 ID=TCONS_00007261|Name=TCONS_00007261|organism=Clytia hemisphaerica|type=transcript|length=1555bp
CTAattttttaaactatttttagCAACTACCAATAAAGCAATTAccaata
aaaatcaaaatttaaaatgttgtCAACACTcagaaaaatttcttcattgA
AACAAGGCTCAAAAGCTATCACTCAACAGGCCACAAGATGCATGTCTGGC
CTTGGCTTTGACTTGAATGATGAGCAAAAAGGAATTGAAGAGCTATCCCG
CAAGTTTGCTCGAGAAGAAATGTTGCCAGTTGCAGCTGAACACGATAAAT
CTGGAGAATTCCCTTGGGATGTCTTCAGAAAAGCTCATGACATTGGTCTA
TTGAATACTGGAATTCCAACTGAATATGGTGGTCTTGGTGTGGACGGCGT
AACAAGTTGTATTATTGAAGAAGAATTTGCGTATGCTTGCACTGGAATGG
GTACAGCTCTTGAAGGAAATGGATTAGCTTGTGCTCCAGTTAACATTGCT
GCTAATGATGAACAAAAGAAGGAATACTTTGGTCGCTTGATTGCTGAACC
ACTAGTAGCGGCCTATTGTGTTACTGAACCAGGAGCAGGATCTGATGTCA
GTGGCTTGAAAACCAAAGCTGAAAAGCATGGTGATGAGTGGGTCATAAAT
GGAAATAAGATGTGGATCACTGGTGCTGGAGTAGCCAATTGgttttttgt
TTTGGCTCGCACTGACCCAAACCCAAAAGCTAAGACTGGTGAGGCGTTTA
CTGGGTTCATCGTCGAAGCTGATACACCTGGAGTTATAATCGGGCGCAAG
GAGTGGAATATGGGTCAGCGTTGTTCTGATACTCGTGGGGTCACATTCGA
AGATGTACGTTTGTCAGATAAAAACGTTCTTGGCAAAGTTGGAGCTGGCT
TCAAATATGCCATGGGTGCTTTCGATAAAACAAGACCCGGGGTCGCTTCA
TCAGCTGTTGGTCTCGCTCAACGTGCTTTAGACGAAGCTGCCCAATACTC
ATTACAAAGAAAGACTTTTGGTACACAAATCGCAAACCACCAAGCTGTTT
CATTCATGTTGGCGGAAATGGCTATTGGAATTGAACTTTCAAGGTTGATG
GTTCGTAAAGCTGCATGGGACTTGGATCAGGGACGAAGGAACACATACTA
TGCATCTATCGCTAAATCTTTTGCATCAGATATTGCTAACAAAAGTGCAA
CAGATTGTGTGCAGATCTTCGGTGGTAACGGCTTTAATTCAGAATACCCA
GCAGAAAAATTGATGAGAGACGCCAAGATTTACCAGATCTACGAAGGAAC
ATCACAAATCCAAAGATTGATCATCGCTCGTGAATATTTTGAACTCCTCT
CCAAACGCTAAAAACTCGAAAGTCTGTCACCctacaaaaaagaatttttc
attaaaactGTAAAATAATTCTAACACACCCACAAATTTgtcttttactt
ttgaaaatacCACTGAAATTTCGCACAATGTATAATTTATTAGTAGTATT
TTTGGttaataatttttattgttcttttATCTGAATCAATCTTATCTGTA
TTGTTTATatggatttttaaaaattatagaaaaataaagaaaataccttt
ttcca
Run BLAST on NCBI

protein sequence of TCONS_00007261-protein

>TCONS_00007261-protein ID=TCONS_00007261-protein|Name=TCONS_00007261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MLSTLRKISSLKQGSKAITQQATRCMSGLGFDLNDEQKGIEELSRKFARE
EMLPVAAEHDKSGEFPWDVFRKAHDIGLLNTGIPTEYGGLGVDGVTSCII
EEEFAYACTGMGTALEGNGLACAPVNIAANDEQKKEYFGRLIAEPLVAAY
CVTEPGAGSDVSGLKTKAEKHGDEWVINGNKMWITGAGVANWFFVLARTD
PNPKAKTGEAFTGFIVEADTPGVIIGRKEWNMGQRCSDTRGVTFEDVRLS
DKNVLGKVGAGFKYAMGAFDKTRPGVASSAVGLAQRALDEAAQYSLQRKT
FGTQIANHQAVSFMLAEMAIGIELSRLMVRKAAWDLDQGRRNTYYASIAK
SFASDIANKSATDCVQIFGGNGFNSEYPAEKLMRDAKIYQIYEGTSQIQR
LIIAREYFELLSKR
Run BLAST on NCBI

transcript from alignment at sc0000075:479791..485981+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007261 ID=TCONS_00007261|Name=TCONS_00007261|organism=Clytia hemisphaerica|type=transcript|length=6191bp|location=Sequence derived from alignment at sc0000075:479791..485981+ (Clytia hemisphaerica)
CTAattttttaaactatttttagCAACTACCAATAAAGCAATTAccaata
aaaatcaaaatttaaaatgttgtCAACACTcagaaaaatttcttcattgA
AACAAGGCTCAAAAGCTATCACTCAACAGGTAAACCtcgttttattttaa
ttttaatatttCCCCTTTTTCAGCATTCTTAAATAACTTTCAAGAATTCT
TattaaactgaaaatttttcctctttctcatTTTTGAATATAGGAAAGCC
TTTTGCGTTACTCCAAACTCATACCAAATGTGTCAGATTTAAAATTTGAT
TTACTCAAACAAATATTCAATCAGGATGAATCTTTCTCTTTTTAGGCCAC
AAGATGCATGTCTGGCCTTGGCTTTGGTATGCAttatatcctaacttaaa
aagATGCAAAATCTTccctttttcaaatatttgttttaaattttttcttc
ctcACGGAAAGAAATCTTGAAGCTGATTAGGCAACTCAGTTTAATTTATT
GAAACGATACGAATAAGTGCCCAAATCCTGAGCAATATTTGCATCGTCTT
CCCTTGATATTTTTGGGTTATATATTTGTCCTTTCCAGACAAAGTTACTA
TCTTCAATGTTTTATTTATACAGACTTGAATGATGAGCAAAAAGGAATTG
AAGAGCTATCCCGCAAGTTTGCTCGAGAAGAAATGTTGCCAGTTGCAGCT
GAACACGATAAATCTGGAGAAGTAAGGAAACATTGCCATTCTTATCAATT
ACTAAATTACTGGGTGCTGAGAGTAGGTGTTTTACTATAACCCTAGTGTA
AGTAGAAAAGATAGACTCCCTCGCTTCCTGCTCTGTCAGTCTCTTCTGAC
AGTTACCACATGAACAAATTGCATACTTCTTTTTATAGTTCCCTTGGGAT
GTCTTCAGAAAAGCTCATGACATTGGTCTATTGAATACTGGAATTCCAAC
TGAATATGGTAGAGTATTTATCATTTATTATgtttatatgaaaaataaat
tcagtTCATTGTTGGTATTTCAGAAGATGACAGGAAATTATATAAATCAA
GAAGACTTACATTAAGATATTATTGtctgtttttctatttctgTTTTTCA
TTGCCCCTCCCTCGTGCAAAAATGTTGaggttgaatttcaaattcATCTC
TAGGTGGTCTTGGTGTGGACGGCGTAACAAGTTGTATTATTGAAGAAGAA
TTTGCGTATGCTTGCACTGGAATGGGTACAGCTCTTGAAGGAAATGGATT
AGCTGTAAGAATGAATTTTATATAAATATCAATATTGATCAATCATTCCT
CTTCAAAACTCTCAATCAAGTCTATACATACCAACTATATACTTGTGTTT
TCAGTGTGCTCCAGTTAACATTGCTGCTAATGATGAACAAAAGAAGGAAT
ACTTTGGTCGCTTGATTGCTGAACCACTAGTAGCGGTGAGGgaagaaaag
attgaaaataaacTAGTCTTTTTCTCCTATTCACTTTGGCCCTTATTGGC
ATTATTTTTTGGCCTTTGGAGGATTAAGGGCCTGCCTTGAATGGGTCAGG
TTTAAAAAGGcacaattttaaaaaggcccAAAATCTCAACCTTAATAAAG
CGCCATTAAATTTTGACTgttttgctttgattttttaaataactatCTTT
TCACTAAAGAAAATTATATATTCACCTTAAGAACTTCTCAAAAAATCGAG
AAATCTATCTGTTTTCAAGCATTTACCAGCAAACGAAAAAAGTGGGAATG
GTTATCTTGGATTCATAAATTTCAGATAATATTATACCATCTTTTCTTTT
GTGGTGGTAGGCCTATTGTGTTACTGAACCAGGAGCAGGATCTGATGTCA
GTGGCTTGAAAACCAAAGCTGAAAAGCATGGTGATGAGGTAAGTTTAACT
GGAGTTTGGTTTGAAACACTTCTTATCTGAGCTAAATGGTCTTTTTATTC
CAATGAATGGCTTTGACACTTCTGAATAGCATATCCATGATTTCTTGACA
TTTATGCTCAAACTCCTTTAATTCCTAAAATTagtttattggacctaccc
cggtggggtggaggtcctataaattaacccgtgttcgttagttagttagt
tagttagttcgttcgttagttaccaacttttctcgaNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTATTGATAGTTACTACTAGTTGTTAATACCATTCAAAGTTT
TGGCTTAATTTTTCTAGTGGGTCATAAATGGAAATAAGATGTGGATCACT
GGTGCTGGAGTAGCCAATTGGTAAGCTTTTTTTTCTGTTCTTCCAACGAG
AGTTTTTCTCACAGATAACAATTTTTTCTTGTGTCAATACAGTGGTTAAG
AAGATTTCATGAAAAGgtgatttgatttttgatataatACCCAAAAAAGC
ATTCCCATTCTCTAAGCAGATTCTGATTATTCACTATGGCTATGCAACTG
GATCATGGGAGGTTTGAGGTGCCCCTATGATGGTTTTATCCAGATTTGTG
ATAGATATTTAGTTGTTTATCGTTGATATTGGTGAAAATATGTGAATGAG
CATGATTTAATGTCTGCCATACCTACACATTAGCAGCCAGCGtttgtttc
attttcacttGAGAATTAATATAAGAAATAATTCAATatagattaaattt
ttattgaatcAATATTTCACTTCTacaattttcaggttttttgtTTTGGC
TCGCACTGACCCAAACCCAAAAGCTAAGACTGGTGAGGCGTTTACTGGGT
TCATCGTCGAAGCTGATACACCTGGAGTTATAATCGGGCGCAAGGTAAAG
GAATACTTTATTCTTACATTAATCATCTGTACTCAACATCAAGAAATAAT
TAGTATACgttctgtaattgataaaacCCTTGTACTGcagcaaattggta
aaataaaaaataaagctGTTCCTTATTGTGTTTTCGGCGTCTTTTATAAA
TTGACCTCACTTTATACTGATAAATTACGTAAACGATGACGAGAATTTGC
TTTTTTTGTTCCATTGTTTCTACATGATTATAATATATGTAGACTTCCAC
CTTTCATTTTTATACTAGCTTTACAGTgattaatatttttcttttaaatg
aaGGAGTGGAATATGGGTCAGCGTTGTTCTGATACTCGTGGGGTCACATT
CGAAGATGTACGTTTGTCAGATAAAGTAAGTGTTTTGTTTCTATCCATCC
TCGTCCTAAGTCTTAACAAGTGTCCAGTTTCTAATCACAGCACTTGAAGC
TTGTATCAGCACTTGAAGCTGgtattttaattaatttaatttatcagtaa
aaaatcactttatttgACGATTATTGAAAAttcattttctgaaatatttc
cTCAAATAGAAGTTGGATGATGTCAAAGTGTGTTCTCTGTCAGCAGCTGA
CGTTTTCTTTAAACAATGATGCATTACTGTTCTTTCTTAGAACGTTCTTG
GCAAAGTTGGAGCTGGCTTCAAATATGCCATGGGTGCTTTCGATAAAACA
AGACCCGGGGTCGCTTCATCAGCTGTTGGTCTCGCTCAACGTGCTTTAGA
CGAAGCTGCCCAATACTCATTACAAAGAAAGACTTTTGGTACACAAATCG
CAAACCACCAAGCTGTTTCATTCATGTTGGCGGAAATGGCTATTGGAATT
GAACTTTCAAGGTTGATGGTTCGTAAAGCTGCATGGGACTTGGATCAGGT
GTGTATGATAAATATACAGTTTTCCAGTAATTTGTACGAGCAGTGTGAGA
AAGTCatcttatttttgattttggtaaAGATTTGTAGCTCAACCTACCCT
CGGCCTCGTGAATAAGATACCAACCCAGAGACAAATTCATTAACATATTT
TTAATTCAGGGACGAAGGAACACATACTATGCATCTATCGCTAAATCTTT
TGCATCAGATATTGCTAACAAAAGTGCAACAGATTGTGTGCAGGTAATTT
TAAGATTCTTTTATCAAGATTTAGTTGTGTCACTCTTAGCTTTTATTTAA
ATGGCAAATAGTCTGCTTCATTGCATTACCTTGGTATTCATTTGACATCG
ATAATAAATGTCTCGAAACAGAGCTTACCTTCATTTACTCTGTATCTTCC
CTGTCTCTTGTTTTGATATGAAATGAAAATCATATTTTGTTTTAGATCTT
CGGTGGTAACGGCTTTAATTCAGAATACCCAGCAGAAAAATTGATGAGAG
ACGCCAAGATTTACCAGGTTACTACCACTAATAcatatatccaccatctt
tgatcggagtttttctTAAGTTGTACCCGCAAAGAGGCCATAACAAAACT
CCGATCAAATTATTTTGCTTTGCCATCATTGAAAAACTGCCTACGTGGTC
TATATGAAGCTCAGTGGGTACTACTCATTCTTGCACTTCATAATGTAAAT
ACAAAATTTAGGGTTTAAagtgagaaaaagatttttactaCGGAGACACC
TTTACTCCgtaatctttttcttttgtcaacTTTGGTATTACTATATGATT
GATCTTCTTTCTTCCTTTCTAGATCTACGAAGGAACATCACAAATCCAAA
GATTGATCATCGCTCGTGAATATTTTGAACTCCTCTCCAAACGCTAAAAA
CTCGAAAGTCTGTCACCctacaaaaaagaatttttcattaaaactGTAAA
ATAATTCTAACACACCCACAAATTTgtcttttacttttgaaaatacCACT
GAAATTTCGCACAATGTATAATTTATTAGTAGTATTTTTGGttaataatt
tttattgttcttttATCTGAATCAATCTTATCTGTATTGTTTATatggat
ttttaaaaattatagaaaaataaagaaaatacctttttcca

Coding sequence (CDS) from alignment at sc0000075:479791..485981+

>TCONS_00007261 ID=TCONS_00007261|Name=TCONS_00007261|organism=Clytia hemisphaerica|type=CDS|length=1245bp|location=Sequence derived from alignment at sc0000075:479791..485981+ (Clytia hemisphaerica)
atgttgtCAACACTcagaaaaatttcttcattgAAACAAGGCTCAAAAGC
TATCACTCAACAGGCCACAAGATGCATGTCTGGCCTTGGCTTTGACTTGA
ATGATGAGCAAAAAGGAATTGAAGAGCTATCCCGCAAGTTTGCTCGAGAA
GAAATGTTGCCAGTTGCAGCTGAACACGATAAATCTGGAGAATTCCCTTG
GGATGTCTTCAGAAAAGCTCATGACATTGGTCTATTGAATACTGGAATTC
CAACTGAATATGGTGGTCTTGGTGTGGACGGCGTAACAAGTTGTATTATT
GAAGAAGAATTTGCGTATGCTTGCACTGGAATGGGTACAGCTCTTGAAGG
AAATGGATTAGCTTGTGCTCCAGTTAACATTGCTGCTAATGATGAACAAA
AGAAGGAATACTTTGGTCGCTTGATTGCTGAACCACTAGTAGCGGCCTAT
TGTGTTACTGAACCAGGAGCAGGATCTGATGTCAGTGGCTTGAAAACCAA
AGCTGAAAAGCATGGTGATGAGTGGGTCATAAATGGAAATAAGATGTGGA
TCACTGGTGCTGGAGTAGCCAATTGgttttttgtTTTGGCTCGCACTGAC
CCAAACCCAAAAGCTAAGACTGGTGAGGCGTTTACTGGGTTCATCGTCGA
AGCTGATACACCTGGAGTTATAATCGGGCGCAAGGAGTGGAATATGGGTC
AGCGTTGTTCTGATACTCGTGGGGTCACATTCGAAGATGTACGTTTGTCA
GATAAAAACGTTCTTGGCAAAGTTGGAGCTGGCTTCAAATATGCCATGGG
TGCTTTCGATAAAACAAGACCCGGGGTCGCTTCATCAGCTGTTGGTCTCG
CTCAACGTGCTTTAGACGAAGCTGCCCAATACTCATTACAAAGAAAGACT
TTTGGTACACAAATCGCAAACCACCAAGCTGTTTCATTCATGTTGGCGGA
AATGGCTATTGGAATTGAACTTTCAAGGTTGATGGTTCGTAAAGCTGCAT
GGGACTTGGATCAGGGACGAAGGAACACATACTATGCATCTATCGCTAAA
TCTTTTGCATCAGATATTGCTAACAAAAGTGCAACAGATTGTGTGCAGAT
CTTCGGTGGTAACGGCTTTAATTCAGAATACCCAGCAGAAAAATTGATGA
GAGACGCCAAGATTTACCAGATCTACGAAGGAACATCACAAATCCAAAGA
TTGATCATCGCTCGTGAATATTTTGAACTCCTCTCCAAACGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004079XLOC_004079Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007261-proteinTCONS_00007261-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007261-exon-sc0000075-1491911889:479791..479919TCONS_00007261-exon-sc0000075-1491911889:479791..479919Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:479791..479919TCONS_00007261-exon-sc0000075-1510915933:479791..479919Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:479791..479919TCONS_00007261-exon-sc0000075-1575043694:479791..479919Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:480136..480166TCONS_00007261-exon-sc0000075-1491911889:480136..480166Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:480136..480166TCONS_00007261-exon-sc0000075-1510915933:480136..480166Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:480136..480166TCONS_00007261-exon-sc0000075-1575043694:480136..480166Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:480414..480511TCONS_00007261-exon-sc0000075-1491911889:480414..480511Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:480414..480511TCONS_00007261-exon-sc0000075-1510915933:480414..480511Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:480414..480511TCONS_00007261-exon-sc0000075-1575043694:480414..480511Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:480679..480748TCONS_00007261-exon-sc0000075-1491911889:480679..480748Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:480679..480748TCONS_00007261-exon-sc0000075-1510915933:480679..480748Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:480679..480748TCONS_00007261-exon-sc0000075-1575043694:480679..480748Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:480944..481044TCONS_00007261-exon-sc0000075-1491911889:480944..481044Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:480944..481044TCONS_00007261-exon-sc0000075-1510915933:480944..481044Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:480944..481044TCONS_00007261-exon-sc0000075-1575043694:480944..481044Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:481145..481225TCONS_00007261-exon-sc0000075-1491911889:481145..481225Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:481145..481225TCONS_00007261-exon-sc0000075-1510915933:481145..481225Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:481145..481225TCONS_00007261-exon-sc0000075-1575043694:481145..481225Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:481601..481678TCONS_00007261-exon-sc0000075-1491911889:481601..481678Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:481601..481678TCONS_00007261-exon-sc0000075-1510915933:481601..481678Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:481601..481678TCONS_00007261-exon-sc0000075-1575043694:481601..481678Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:483358..483410TCONS_00007261-exon-sc0000075-1491911889:483358..483410Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:483358..483410TCONS_00007261-exon-sc0000075-1510915933:483358..483410Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:483358..483410TCONS_00007261-exon-sc0000075-1575043694:483358..483410Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:483826..483934TCONS_00007261-exon-sc0000075-1491911889:483826..483934Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:483826..483934TCONS_00007261-exon-sc0000075-1510915933:483826..483934Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:483826..483934TCONS_00007261-exon-sc0000075-1575043694:483826..483934Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:484244..484315TCONS_00007261-exon-sc0000075-1491911889:484244..484315Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:484244..484315TCONS_00007261-exon-sc0000075-1510915933:484244..484315Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:484244..484315TCONS_00007261-exon-sc0000075-1575043694:484244..484315Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:484581..484838TCONS_00007261-exon-sc0000075-1491911889:484581..484838Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:484581..484838TCONS_00007261-exon-sc0000075-1510915933:484581..484838Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:484581..484838TCONS_00007261-exon-sc0000075-1575043694:484581..484838Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:485000..485083TCONS_00007261-exon-sc0000075-1491911889:485000..485083Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:485000..485083TCONS_00007261-exon-sc0000075-1510915933:485000..485083Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:485000..485083TCONS_00007261-exon-sc0000075-1575043694:485000..485083Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:485286..485357TCONS_00007261-exon-sc0000075-1491911889:485286..485357Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:485286..485357TCONS_00007261-exon-sc0000075-1510915933:485286..485357Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:485286..485357TCONS_00007261-exon-sc0000075-1575043694:485286..485357Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1491911889:485663..485981TCONS_00007261-exon-sc0000075-1491911889:485663..485981Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1510915933:485663..485981TCONS_00007261-exon-sc0000075-1510915933:485663..485981Clytia hemisphaericaexon
TCONS_00007261-exon-sc0000075-1575043694:485663..485981TCONS_00007261-exon-sc0000075-1575043694:485663..485981Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:479791..485981 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
183.583	187.144	318.045	347.45	196.173	157.8	142.293	169.442	241.415	257.102	339.623	258.205	235.899	226.232	266.231	338.582	213.677	213.111	141.58	159.354	176.938	180.265	212.608	214.75	186.04	173.133	268.968	265.411	407.379	339.346
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006091Acyl-CoA_Oxase/DH_cen-dom
IPR009075AcylCo_DH/oxidase_C
IPR013786AcylCoA_DH/ox_N
IPR006089Acyl-CoA_DH_CS
IPR009100AcylCoA_DH/oxidase_NM_dom
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0003995acyl-CoA dehydrogenase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003995 acyl-CoA dehydrogenase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
Blast
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BLAST of TCONS_00007261 vs. Swiss-Prot (Human)
Match: ACADM (Medium-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADM PE=1 SV=1)

HSP 1 Score: 550.821 bits (1418), Expect = 0.000e+0
Identity = 260/409 (63.57%), Postives = 325/409 (79.46%), Query Frame = 1 
Query:   64 KMLSTLRKISSLKQGSKAITQQATRCMSGLGFDLNDEQKGIEELSRKFAREEMLPVAAEHDKSGEFPWDVFRKAHDIGLLNTGIPTEYGGLGVDGVTSCIIEEEFAYACTGMGTALEGNGLACAPVNIAANDEQKKEYFGRLIAEPLVAAYCVTEPGAGSDVSGLKTKAEKHGDEWVINGNKMWITGAGVANWFFVLARTDPNPKAKTGEAFTGFIVEADTPGVIIGRKEWNMGQRCSDTRGVTFEDVRLSDKNVLGKVGAGFKYAMGAFDKTRPGVASSAVGLAQRALDEAAQYSLQRKTFGTQIANHQAVSFMLAEMAIGIELSRLMVRKAAWDLDQGRRNTYYASIAKSFASDIANKSATDCVQIFGGNGFNSEYPAEKLMRDAKIYQIYEGTSQIQRLIIAREYF 1290
            ++L ++ +     Q +KA  Q+      G  F+  ++QK  +  +RKFAREE++PVAAE+DK+GE+P  + R+A ++GL+NT IP   GGLG+    +C+I EE AY CTG+ TA+EGN L   P+ IA ND+QKK+Y GR+  EPL+ AYCVTEPGAGSDV+G+KTKAEK GDE++ING KMWIT  G ANW+F+LAR+DP+PKA   +AFTGFIVEADTPG+ IGRKE NMGQRCSDTRG+ FEDV++  +NVL   GAGFK AMGAFDKTRP VA+ AVGLAQRALDEA +Y+L+RKTFG  +  HQA+SFMLAEMA+ +EL+R+  ++AAW++D GRRNTYYASIAK+FA DIAN+ ATD VQI GGNGFN+EYP EKLMRDAKIYQIYEGTSQIQRLI+ARE+ 
Sbjct:   10 RVLRSISRFHWRSQHTKANRQREPGL--GFSFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYEGTSQIQRLIVAREHI 416
The following BLAST results are available for this feature:
BLAST of TCONS_00007261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACADM0.000e+063.57Medium-chain specific acyl-CoA dehydrogenase, mito... [more]
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