TCONS_00007262 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007262
Unique Name	TCONS_00007262
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1916

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000075:491925..499393+

transcript sequence

>TCONS_00007262 ID=TCONS_00007262|Name=TCONS_00007262|organism=Clytia hemisphaerica|type=transcript|length=1916bp
TCACCTAGGTAACCAGATGAAAACGATGCATAACATTCGATTAGTATCTC
GTGACATCTTAGATTATTGTCATTGCAAAACCTCTTTCATTGGaggGAAC
ATGGTTCCTCAACCACAACGTCTTCAAACGTCGATGAGTTTATATTCTGA
GAATTTATCGGCTATGGTGTTCTTGGTGGACGATCGGCTGAATGCTTCCA
TGGGGCTCAAGAAAAAGTTTGAGAACATTGTCCAGGAGACAACGGATTTT
CACTTTCCAAGTTTCGAGCAACAGAGATGCTTGATTGAACAAACATTATC
ACAGCAACGATCACGTGCACGTACTTTGAGGACCAGCTCCTTGTCACGTT
CCAAACAAAACGAAACGACCAATAAACTTCTACAGACAGGTGATTTTTAC
CTAACCAAGCATTCGAATTTGGCTGAAGTGCATGCAGTCTTTCACTTGGT
GACTGACGACAATCTATCTGCAATGACCATCAATTCGcgtcatcctatca
tgattggTGTTCGGAATATCATGTTGGCAGCATCTAGATACAATATCACC
AATCTGGCTATTCCACTTTTGTTGGTCCATGAAATGGGAGAGAATTTAAC
AATGCAATGGTGTATGAAAAGAGCGGAATTGGTTTTCAAATGTGTCAAAG
gttttatGATGGAAAGTTTATCTTGGGATGGTGATGATGCTAAAACTGTT
CAATTCGTTGTCCCTCCGGGGATATCTGAAGATATGTTCATTGCACTGAG
TAACATGCTTCCAAGTGTGTTTCGCGTTTCAACCACACTTGATCTCTCCA
AAAGATGATTTGAACTAATCTCGTACAACAGATATCCAAAAGAATCCAGA
AATTTCAGTCAACAACTATTTCGCTTTCGAGCTAAGAATCAAGCAGATAT
ATTATATTCAAAATTGGGCTAGACTTGGCTTGAAATATTGAAAGTCGTTG
GATATGCGAGCAAGAGAGAATGGACATCCCAACAAAGTGGTAGAACACTG
TACCGTGAAATAATGACATTTTTGGATAAATCATCTCATCTGTATACCTG
TTCCAGTGTCTACAGGGCCGTCTACAAGGCCGTCTCAATGTGACGCACTT
TAGCTCATGGTGGAAAACACACTTGAGAGTGTTATTAAAACATTTGTTCA
GTTAACACTCATGAGAGACAAGGATGTGAACGAGAACTCGAAAGCAACGC
TTGAGAAACATCAAATATGACGCATTTATCTCCTATGGCAATGGTGAGTT
TTTCGACGATGAACTTTTTGATGGGATATCACAGATATACATTTCTCCAC
AATCTAGAATGGGGTTTTGCTAAGGAAGCACGTCCAACTTTTGACGAGAC
AATCTTAAACCGTTAGAATCTTATGGTGATTTTCAATGTTAAATACAACA
ATAAATACAACAATCAAAGTGTATCTCGTGCTTTATACAACACGTGAGAA
CATGATGTGGTatggatttgatttttttatgttaTTCACCTATCAAATGA
ATTAAGCATAGATCAGTGTTTTAATATAGAAACGGAAGAATTGGAACGTT
ATTGTATTGACTTTCTCCTCATGTTGATTGACTGGTTGATAATGATGATG
AAAATATGGTATACCATCATTTTCATACTTTAGACACCAATGTTTCGTAA
TGCAGTTTCAAGGAATATCTTCTATGAGAATCGCTGGTTTtttataaaac
gttttttttccTTGAAATGAGAGGCCTTATTTTGAAATTGGTGTTCTCTC
AGGCACATAATTTTGTgatgtttaattttcttttgaggAAAGTTTGTCGA
TATAAGGCTtagggacacgagaagtttttttcgcgttggtgcaaagtgca
tgagacacgcactttttttcttgtgttggtgggatggagcatgttgtatt
gcaccaacgcgaaaaa

Run BLAST on NCBI

transcript from alignment at sc0000075:491925..499393+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007262 ID=TCONS_00007262|Name=TCONS_00007262|organism=Clytia hemisphaerica|type=transcript|length=7469bp|location=Sequence derived from alignment at sc0000075:491925..499393+ (Clytia hemisphaerica)
TCACCTAGGTAACCAGATGAAAACGATGCATAACATTCGATTAGTATCTC
GTGACATCTTAGATTATTGTCATTGCAAAACCTCTTTCATTGGGTACGTG
TTTCATTTCTCTTCTGTTGACATAATGATTTTTACACGCAACCCTCCCCC
CCCCTACGGACCTTTTAGGAACcttcctttttggacctaccccggtgggg
tagaggtcctataaattaaccgatgtccgttcgtccgttcgtctgtccgt
tcgtccgtccgtctgttaccagcttttctcagaattggctcattagtttt
ttctgattttttgctcaaagatgcctaataacaatgcccaaaacatggcc
gagtccgatttttgagaaacatttttttatgccgaaaaaactgttttttt
tggcattttctcgagattttatcattatttttttctgattttttgctcaa
agatgcctaataacaatgcccaaaacatgaccgagcccgatttatgagaa
aaaaattttccggccgaaaatgccggaaatatgccggaaaaaactgtttt
tttggtattttctcgagattttatctttagttttttctgattttttgctc
aaagatgcgtattaacaatgcccaaatcattgccgagtccgatttttgag
gaaaaaaatttcccggccgaaaatgccggaaatcgccgttttttgcagat
tttcattggactttttcctgatatttctttgttttttcacgcaAAATCAT
TATTGGTATCAATGTCAACCATCAagtatggttcaattgtcaataaaact
gatttttgatgccgggaactttctaaaaatcgccggaacagccgaatatc
gccgaaaaaaaacgttttttttttaatttcgcgagctgtactttatattt
tttcatgaaattttgcacactgaagcAAAAtagcaatacctaaaatgtga
cggagcctgatttttgaagataaaaattttcggccaaaaatgccgaaaat
atgccgtcaaaaccggtttgttgccattttgtcgagatttcattaatcgt
ttttctcgatttttgcacaaagatgtgtataagcaatgccctaagtgtgg
ccgattcggatttttgagaatcatgtttttccggccgaaaatgccggaag
tatgccggaaatcgccgattttgcagaatttgaattgggctttttccata
tatttctttgttttttcacttaaagaaattattgataacaatgccaccat
caagcatgattcaattggcaataaaacttttgcaattttgcaactggaac
tttatatttctttttccctaaacccctccccccccccatcaacaatcaat
gatgaaatttaatgcattttcgctaagcgctatattttcttaatgattgt
ttttttccttattgctatctaagtttcatcatcaggtaggtccattcagc
atcttgCTTGTTTCATAAAAATTCCATGGACCTTTTTCCTACACGAATAT
GtgtaactttttttctctttttctctttttggctAATAACTGCTAATGCT
AAGGTGAAAAAAGAATTAGTAATCAGAGACGCCCCAAAAAAATCTGCCAC
TGGGGGGAGTAGTTACTCCCCTAACAGCACCTCATTAAGCTAGCTAtaga
gattttgaaagccaCTGCGTGTCTAGCTTATTTTTAGAACTGTTAACTCC
TCTCTTTATAAGCAACGCACTTGTGAAATTCTTGTTAGTACGTGCACATT
ATTTCagaaaactactttctattgaAAGTtgatgaaattaaaaatcattt
atttattttattttagaggGAACATGGTTCCTCAACCACAACGTCTTCAA
ACGTCGATGAGTTTATATTCTGAGAATTTATCGGCTATGGTGTTCTTGGT
GGACGATCGGCTGAATGCTTCCATGGGGCTCAAGAAAAGTAAGTGCTTCT
TATTCATGAtaatcatgacgtaatgtttctacggaaataccccggtttta
gccagtagtgacAAATTTAAACTACACAAAAGTTGCATAatatttgccac
tactggcaaaaaccggggtctttctgtagaaaaacattacgtaatgaata
tcatgaatggaCATCTTTTTGTAATAATCGGTAGATTTCAGGGACTTTaa
ggttttgattttaaataagagtgatatcgtttgcttactcatcaatttta
atatacatacaagcttttttatatttaattgacacggatgtggagcaaga
ttggtctaAAAGAGGAAATCAGCACAATGTAACTATAGGCAGACATTGTC
CTGATATAAAACATGTGCCTGGTATGAAATGGGGACAattgtgtaaaaat
aaaaccttttaagttgtttttcgttttttttcttcttagttTTGCCAAAG
ACTTTGCATCTTTATTCTCATGAAATTGCTCTTTTTATTAAAGAGCTTCt
gctttagaaaaaaaactccCTACAAGAAACATTGTCGACATTTTCCTTTT
TACAGAGTTTGAGAACATTGTCCAGGAGACAACGGATTTTCACTTTCCAA
GTTTCGAGCAACAGAGATGCTTGATTGAACAAACATTATCACAGCAACGA
TCACGTGCACGTACTTTGAGGACCAGCTCCTTGTCACGTTCCAAACAAAA
CGAAACGACCAATAAACTTCTACAGACAGGTACTTTTTTAGTTACATTCC
TCTGGAAGATTTTGTGTAGTTACTACGTAGACTTCGATTATTTAATAGTG
GTTTCCAGAAGCCTTTGGTTATAGAACACTGGACTTTATATAAACCCTCA
GGGCAGCTTATCAAGCAAAATGTTTTAATCGGAGTTTTTTAGAAAGTGGT
GCCCTAATGTTAGCACTACACTATAGCGACGGTGTAATGCATCGTATACG
TACTTTTCCTTAAAAACACTTGTATGTGGTGTAGTGCTGTTGAATGAATC
AGGTAAAGCTTAGTACTGTAATTACTACTTTAAAAAACTCGGATCaaaaa
tggtggatatagcttTGCCTAGGGTAAGGGTTTATTAAGACCACACTTAC
TGGTTATGTGAGAACCTTTGATAAATCTTGAACAACATTTCATCTTAACT
ATATCAGGTGATTTTTACCTAACCAAGCATTCGAATTTGGCTGAAGTGCA
TGCAGTCTTTCACTTGGTGACTGACGACAATCTATCTGCAATGACCATCA
ATTCGcgtcatcctatcatgattggTGTTCGGAATATCATGTTGGCAGCA
TCTAGATACAATATCACCAATCTGGCTATTCCACTTTTGTTGGTCCATGA
AATGGGAGAGGTAATCTACATTCTCTTTTTAATTCTATTTTCGAGGGTCA
GAATTGTCTTGAAATTAGAGAAGAACTTGAGAGAAGAGAAGCGGACCCTT
CGATATAATCGGACCGGGTCCTATCTTGGGATGGTTTCCTACCcctagat
agggaaatcacagcgcttaccagacatcatagttcggaccccccccccct
ttcttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGGGtatgacaccttccaaaaaagtggaGAAAgggggtcagaaattttc
actaaaagggGGGGATAGCAAATTTAGCCCGAAACCCTtaggggataggc
atttttaaaggttgggggatgccaagaaggaggggtatttaagaaggggg
ggttagacccctttccgcactatggacattgtactctgtgctcgcgacac
atcagaTCCGTGCTGTATCATGATGATATTCGCGCAGTACGGAAGAACAT
TGCGTTCTCGCAGGTACTGAACATATGAGTACCATCACCACACCACATGT
AATGTCCAGCATAtctccccatactcttgtatcagagtgatggtacccta
ttcTTCCCCTTACATAGTATGGCcgaggtacattcacttgccaagtgaat
cgtagcaccgagtgggaatcgaaccctcaCCTCCACGGAAGTCAAGaacg
atgaccactacactactacgCTGGTAAAACCAAGACGATGGTTTAACTCT
TGCACTTTTCTTGAAAACATCtagctttttctttcttaaccTCAACGGAA
ATATATTCTAATGGGGTACACAGTAGAGCATCCGGAGAAATGGGAAAAAT
CCAATTTCCTatgaaaattagatttgaaaATGGAGGGTtgcaaatttgga
aaaaatcaatcaattatctCAAAAACCGCAAATTGAATGACATATGTTTC
AAAGTCATTGTCCTTTCTGAAAATGCTGGAGATTTTAGGGGCTGTTCATT
ATaatgttatttttctttctcaaaattctgcatgaTTAGAGTAACCAAAA
TCTCCGGGACATatgctaatttgctgtgtaaaatccattttcgtGTAAGA
TGTTAAACCACTTAGACCACTGGATTCAGGGctcataatttttgaagaat
aaaGGACATCTTCAGACATTTTTTAGGAAGTAGAAATGCTGCATACACGC
TCATAAGAAATGACTGTCGATTTTATTGGactgttccattaaaaaccaAA
CAGGGGGTGGATGaaacttttcaagtcaaaacaaatattgaaaatgtgtg
gaaaCCCTcctaaagtgagggtggacgaactgaaatcaatcttttacccc
ctggaaatattATAACTTTtaaccccttggaaaaatgaaacaatacccct
tggaaatgttcgtccaccccctatatggatataaaataaaatggctCATT
GCTTGCTCTAGAAAAGTGAAGGTTTGGTTGCAATTTCGAATTTTAATCCA
TGTCCTTACTTTATTCAGAATTTAACAATGCAATGGTGTATGAAAAGAGC
GGAATTGGTTTTCAAATGTGTCAAAGGTATTTTTAAAACATCGATCTGTC
TGAGAATTTCCAACCAGGATCCCGATCAATTTTAATTTCGAATTAAGCTG
TCGGGAAATCCATGATTCTCGTATGTCCCTAACAGTACGCCTTGTTTGCA
TAAAAGGGGATCctaaatttttgtaaatctaATTAACAGGAGCTTGGTCA
GGTCGAAATAGTTATCAAAAAGCTGTAAAGAGCAAAAAGAGGCTGAAGAT
GTGTGAATAAGTGGGAAAAGACATATGATTAAccctcaaatttttttctg
gtaaAATTAACAAGTGGGGGTATATAAGAAAGCGGACCGGAGGAtgtgaa
aatctttcaaaaaaaaaaagaaaaaatgctaTTGcttcttttcaatttct
tttttaaaaacaggttttatGATGGAAAGTTTATCTTGGGATGGTGATGA
TGCTAAAACTGTTCAATTCGTTGTCCCTCCGGTAAGTTGTTTACTATGcg
ttgcagaattcctaagtaGGGCGAAAGTTTTAAGGGGACTAAGGGGGAAT
AAGTGCTCTTTCTGACATTTCAAAGATAGTCAGTTGTCGTGATTATAGCC
ATTTTGGGAAGTGTCGACATCAAGCTATTTAGGCTTTGATACTTTGatag
tactcttaggtgccaaataaacgggggggggctaattgccgggggggtgt
TTGAAATTGTACTTaactgaaaacccaaaaataaggtaaatataggctaa
aatcaggctttttggagcaaaataagtggacttctttttgccaactgaaa
attttcgagaaattaacaagcgggaggggacgtttatttggcacctaaga
gtacttgtcgtttcaaaataaattcatGTTATAATTTCATAGATGATaag
ttttcaaataaaacaacttcttttttatgagaatgaTGAGGTTagaaatc
tcaaaaaataagaacattattaACTGCTGAATTTCGAGCATTTCAGGGAg
ccaaaaaaagtgaaaactgGGTACTAAGCCTTAAAATACACGGATTTTGA
cctgaaaataataattaaaattaataattaataattcaaaacaatttcag
gctaTAAGTATAAGTGTGAAAAGAGTATGAAGAGCAGAGCCTCAGCATTG
GATTTTTACAATATTGCACTGAAAAGATTTCAGTTATCTcatgactttga
ttttttacttttctcgCACAGGGGATATCTGAAGATATGTTCATTGCACT
GAGTAACATGCTTCCAAGTGTGTTTCGCGTTTCAACCACACTTGATCTCT
CCAAAAGATGATTTGAACTAATCTCGTACAACAGATATCCAAAAGAATCC
AGGTATTTCTTCAAATCTATGTAAATACgatgaaatatttttcgcaTGTG
TTACTTACAACTTTGTGCTGTAGATATGGAAAAGaagggcttcaaaaatt
tttaaataaagaacTCCAGAATTTACAATATCCTTTTTCCATGCAAATCC
AGAAATTTCAGTCAACAACTATTTCGCTTTCGAGCTAAGAATCAAGCAGA
TATATTATATTCAAAATTGGGCTAGACTTGGCTTGAAATATTGAAAGTCG
TTGGATATGCGAGCAAGAGAGAATGGACATCCCAACAAAGTGGTAGAACA
CTGTACCGTGAAATAATGACATTTTTGGATAAATCATCTCATCTGTATAC
CTGTTCCAGTGTCTACAGGGCCGTCTACAAGGCCGTCTCAATGTGACGCA
CTTTAGCTCATGGTGGAAAACACACTTGAGAGTGTTATTAAAACATTTGT
TCAGTTAACACTCATGAGAGACAAGGATGTGAACGAGAACTCGAAAGCAA
CGCTTGAGAAACATCAAATATGACGCATTTATCTCCTATGGCAATGGTGA
GTTTTTCGACGATGAACTTTTTGATGGGATATCACAGATATACATTTCTC
CACAATCTAGAATGGGGTTTTGCTAAGGAAGCACGTCCAACTTTTGACGA
GACAATCTTAAACCGTTAGAATCTTATGGTGATTTTCAATGTTAAATACA
ACAATAAATACAACAATCAAAGTGTATCTCGTGCTTTATACAACACGTGA
GAACATGATGTGGTatggatttgatttttttatgttaTTCACCTATCAAA
TGAATTAAGCATAGATCAGTGTTTTAATATAGAAACGGAAGAATTGGAAC
GTTATTGTATTGACTTTCTCCTCATGTTGATTGACTGGTTGATAATGATG
ATGAAAATATGGTATACCATCATTTTCATACTTTAGACACCAATGTTTCG
TAATGCAGTTTCAAGGAATATCTTCTATGAGAATCGCTGGTTTtttataa
aacgttttttttccTTGAAATGAGAGGCCTTATTTTGAAATTGGTGTTCT
CTCAGGCACATAATTTTGTgatgtttaattttcttttgaggAAAGTTTGT
CGATATAAGGCTtagggacacgagaagtttttttcgcgttggtgcaaagt
gcatgagacacgcactttttttcttgtgttggtgggatggagcatgttgt
attgcaccaacgcgaaaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004080	XLOC_004080	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000075	supercontig	sc0000075:491925..499393 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70566	1.63002	1.96986	1.43595	6.30249	5.05321	9.98855	9.55455	7.94146	7.76853	7.5367	6.38705	5.12538	4.03785	5.71433	7.5477	6.14608	6.01273	2.41874	3.62527	6.53055	6.72574	4.6154	4.30415	4.70877	5.29666	5.66933	4.90305	5.33868	3.51045

Blast

[Close]

BLAST of TCONS_00007262 vs. Swiss-Prot (Human)
Match: CL004 (Protein C12orf4 OS=Homo sapiens GN=C12orf4 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 7.777e-80
Identity = 131/278 (47.12%), Postives = 188/278 (67.63%), Query Frame = 2

Query:    2 HLGNQMKTMHNIRLVSRDILDYCHCKTSFIGGNMVPQPQRLQTSMSLYSENLSAMVFLVDDRLNASMGLKKKFENIVQETTDFHFPSFEQQRCLIEQTXXXXXXXXXXXXXXXXXXXKQNETTNKLLQT----------GDFYLTKHSNLAEVHAVFHLVTDDNLSAMTINSRHPIMIGVRNIMLAASRYNITNLAIPLLLVHEMGENLTMQWCMKRAELVFKCVKGFMMESLSWDGDDAKTVQFVVPPGISEDMFIALSNMLPSVFRVSTTLDLSKR 805
            HLG Q+KTMHN+RL+  D+LD+C  K +   G  +    RLQT++SLYS +L  +V LVD+R+N+  G+K+ F  + QE TDFHFP  E+Q  +++Q +   R++ R+    SL    QN   +   +           G+FY+T+HSNL+E+H  FHL  DD++ +  I +R P ++G+RNI+     ++IT ++IPLLLVH+M E +T+ WC++RAELVFKCVKGFMME  SWDG  ++TVQF+VP  ISE+MF  LSNMLP +FRVS+TL L+ +
Sbjct:  277 HLGAQLKTMHNLRLLRADMLDFCKHKRNHRSGVKL---HRLQTALSLYSTSLCGLVLLVDNRINSYSGIKRDFATVCQECTDFHFPRIEEQLEVVQQVVLYARTQRRSKLKESLDSGNQNGGNDDKTKNAERNYLNVLPGEFYITRHSNLSEIHVAFHLCVDDHVKSGNITARDPAIMGLRNILKVCCTHDITTISIPLLLVHDMSEEMTIPWCLRRAELVFKCVKGFMMEMASWDGGISRTVQFLVPQSISEEMFYQLSNMLPQIFRVSSTLTLTSK 551

The following BLAST results are available for this feature:

BLAST of TCONS_00007262 vs. Swiss-Prot (Human)

BLAST of TCONS_00007262 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CL004	7.777e-80	47.12	Protein C12orf4 OS=Homo sapiens GN=C12orf4 PE=2 SV...	[more]

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TCONS_00007262 (transcript) - C. hemisphaerica