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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007266 ID=TCONS_00007266|Name=TCONS_00007266|organism=Clytia hemisphaerica|type=transcript|length=948bp
AATGATTTGgagaaacaaaaaatcaaaaacaaaagaaaggacAAGTTTTC
ACCTtgtgtattttgtaattttgttgaAGAATGGATAAGgtcATTTCTTG
GTGGAAAAACAGAGGTACAAGCTCTTCAAGTAATCCTTCAACCCCAATCC
AACATTCAAAAAAGGAATCTAAGGTTGGAGATCAGGATGAAGAATCTGCA
ACAGTTGATCAGCCTTTACTTCTCGATACATCGACAACTACATCAGATGC
ACCGATTCAGGAGAAAGCACACACAGATGATAAGGAACCTTCAACCTCTG
AAAGTGAAAACCCTACTACTCCAAGCAAAAATCCATCTTATGTTGAACAA
AAAGAAGCAACATTGTTTGAAATCGATCGAAGTCAACAACTTCTTGAATC
ATATCGTGATCGTTTGATCaaggaaaaacaagaagaaaaggATCAGGAAC
ATGTCATCATACgtaaaatctataaaataaatatcGATGAAGGAAAATCA
GAAGTGGCAAGTCCAGCACCAGAAGATGAACCTATAACAACTGAGGAATA
GATGGTGACACCCCGGTGACACTGACAGAAAAGGTTCACCACGCCAAATT
TCCATTTCACGAAAACATCAAGTAGCTTGAATCTAGCATTTTGAATCATA
CTGTTCGCGAATTGattgcaaatttttcaaaatgttctagCTTAGATTAC
GTCACTGATGAATCGAATTTGGAATTAATGGACTTGAAAGCTATGATTCA
TTACAGTAGGTATTTTTTACCGATGAAACCATATTTTATCATTGATATTT
ATctactttaaaatattttaaaatgtaaatataCTGATTCCTATTTCCAG
TAAAATATTCTAATACGTCTCTAATATGGATACAATTGTGAATTCAGGAA
CAGCCCGCTTAGCCGGAGCAAGTGAGAGTGAGTTGAGTTGGAGTGAGA Run BLAST on NCBI protein sequence of TCONS_00007266-protein >TCONS_00007266-protein ID=TCONS_00007266-protein|Name=TCONS_00007266-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MDKVISWWKNRGTSSSSNPSTPIQHSKKESKVGDQDEESATVDQPLLLDT
STTTSDAPIQEKAHTDDKEPSTSESENPTTPSKNPSYVEQKEATLFEIDR
SQQLLESYRDRLIKEKQEEKDQEHVIIRKIYKINIDEGKSEVASPAPEDE
PITTEE Run BLAST on NCBI transcript from alignment at sc0000075:600642..602452+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007266 ID=TCONS_00007266|Name=TCONS_00007266|organism=Clytia hemisphaerica|type=transcript|length=1811bp|location=Sequence derived from alignment at sc0000075:600642..602452+ (Clytia hemisphaerica)
AATGATTTGgagaaacaaaaaatcaaaaacaaaagaaaggacAAGTTTTC
ACCTtgtgtattttgtaattttgttgaAGAATGGATAAGGTAAAGAAATA
TATTCAAAGCGAAACACACTTTTTTCTGCTTTATGAGAATCTGTAGTTTC
GTAGTTTTTACAGGTGCACAGGGACATACAGtattcaaaactcaaaatag
ttttattttatttttaggtcATTTCTTGGTGGAAAAACAGAGGTACAAGC
TCTTCAAGTAATCCTTCAACCCCAATCCAACATTCAAAAAAGGAATCTAA
GGTAATCTTAAAGTTGTTGGTTGTAAGTAAGCGTCATTTATCCAAGGAAT
TGGATGGGTGGTGTTTACAGTAATCAAATCAAATACACAAGAATCACACT
CaagaaagtctaaaaagatCTTAAAAGCTCCTAGAATACAAATAATCCAA
TAAAAGCTCTGgaaaattatgtgaaaaatggCCTATAGTGTCTAAAatgc
tcaaaaatcttttaacaaaaaattgacGCGATTTCACCCTTCATTGCATT
GGAATCTGTCAATCAACGAAAAATCtgtcaatcaaagaaaattctgTCAA
TCAAAGTGATTAATAAAAATCTTTTCTTAGCTCAAAAGGACCTAGCCAAA
TCAATATTAAACTTTCTCAAAtcgcttcattttttattttccctcGCAAT
CAAATCTTCGACACCTAGGTTGGAGATCAGGATGAAGAATCTGCAACAGT
TGATCAGCCTTTACTTCTCGATACATCGACAACTACATCAGATGCACCGA
TTCAGGAGAAAGCACACACAGATGATAAGGTGAATATACCTTACCCTTTG
ATAATGGGTTTCACTCAAACAGATGACCTCTTTTTTTCTAGTTTCTTGGT
CGCCTTACAAACCAGTTCAGTCGAAAAAATTTGTGCTCACCGTGCGTGTT
TTATAACTTGAACTGAAATTTTCTtaatactttgaaaaaaatcttctaaa
aatATACGGATGTCTGCTCAAATATAATACCAAAATCTCCTAAAACCACc
tcagaaattgaaaaaatgctcCTCGAACTTTTCAAATTCGATCTCTAAAG
CTTGGAGAACCCTATGATAATAATTcacaataaaaacttttgcccAGGAA
CCTTCAACCTCTGAAAGTGAAAACCCTACTACTCCAAGCAAAAATCCATC
TTATGTTGAACAAAAAGAAGCAACATTGTTTGAAATCGATCGAAGTCAAC
AACTTCTTGAATCATATCGTGATCGTTTGATCaaggaaaaacaagaagaa
aaggATCAGGAACATGTCATCATACgtaaaatctataaaataaatatcGA
TGAAGGAAAATCAGAAGTGGCAAGTCCAGCACCAGAAGATGAACCTATAA
CAACTGAGGAATAGATGGTGACACCCCGGTGACACTGACAGAAAAGGTTC
ACCACGCCAAATTTCCATTTCACGAAAACATCAAGTAGCTTGAATCTAGC
ATTTTGAATCATACTGTTCGCGAATTGattgcaaatttttcaaaatgttc
tagCTTAGATTACGTCACTGATGAATCGAATTTGGAATTAATGGACTTGA
AAGCTATGATTCATTACAGTAGGTATTTTTTACCGATGAAACCATATTTT
ATCATTGATATTTATctactttaaaatattttaaaatgtaaatataCTGA
TTCCTATTTCCAGTAAAATATTCTAATACGTCTCTAATATGGATACAATT
GTGAATTCAGGAACAGCCCGCTTAGCCGGAGCAAGTGAGAGTGAGTTGAG
TTGGAGTGAGA Coding sequence (CDS) from alignment at sc0000075:600642..602452+ >TCONS_00007266 ID=TCONS_00007266|Name=TCONS_00007266|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at sc0000075:600642..602452+ (Clytia hemisphaerica)
ATGGATAAGgtcATTTCTTGGTGGAAAAACAGAGGTACAAGCTCTTCAAG
TAATCCTTCAACCCCAATCCAACATTCAAAAAAGGAATCTAAGGTTGGAG
ATCAGGATGAAGAATCTGCAACAGTTGATCAGCCTTTACTTCTCGATACA
TCGACAACTACATCAGATGCACCGATTCAGGAGAAAGCACACACAGATGA
TAAGGAACCTTCAACCTCTGAAAGTGAAAACCCTACTACTCCAAGCAAAA
ATCCATCTTATGTTGAACAAAAAGAAGCAACATTGTTTGAAATCGATCGA
AGTCAACAACTTCTTGAATCATATCGTGATCGTTTGATCaaggaaaaaca
agaagaaaaggATCAGGAACATGTCATCATACgtaaaatctataaaataa
atatcGATGAAGGAAAATCAGAAGTGGCAAGTCCAGCACCAGAAGATGAA
CCTATAACAACTGAGGAATAGATGGATAAGgtcATTTCTTGGTGGAAAAA
CAGAGGTACAAGCTCTTCAAGTAATCCTTCAACCCCAATCCAACATTCAA
AAAAGGAATCTAAGGTTGGAGATCAGGATGAAGAATCTGCAACAGTTGAT
CAGCCTTTACTTCTCGATACATCGACAACTACATCAGATGCACCGATTCA
GGAGAAAGCACACACAGATGATAAGGAACCTTCAACCTCTGAAAGTGAAA
ACCCTACTACTCCAAGCAAAAATCCATCTTATGTTGAACAAAAAGAAGCA
ACATTGTTTGAAATCGATCGAAGTCAACAACTTCTTGAATCATATCGTGA
TCGTTTGATCaaggaaaaacaagaagaaaaggATCAGGAACATGTCATCA
TACgtaaaatctataaaataaatatcGATGAAGGAAAATCAGAAGTGGCA
AGTCCAGCACCAGAAGATGAACCTATAACAACTGAGGAATAGATGGATAA
GgtcATTTCTTGGTGGAAAAACAGAGGTACAAGCTCTTCAAGTAATCCTT
CAACCCCAATCCAACATTCAAAAAAGGAATCTAAGGTTGGAGATCAGGAT
GAAGAATCTGCAACAGTTGATCAGCCTTTACTTCTCGATACATCGACAAC
TACATCAGATGCACCGATTCAGGAGAAAGCACACACAGATGATAAGGAAC
CTTCAACCTCTGAAAGTGAAAACCCTACTACTCCAAGCAAAAATCCATCT
TATGTTGAACAAAAAGAAGCAACATTGTTTGAAATCGATCGAAGTCAACA
ACTTCTTGAATCATATCGTGATCGTTTGATCaaggaaaaacaagaagaaa
aggATCAGGAACATGTCATCATACgtaaaatctataaaataaatatcGAT
GAAGGAAAATCAGAAGTGGCAAGTCCAGCACCAGAAGATGAACCTATAAC
AACTGAGGAATAGATGGATAAGgtcATTTCTTGGTGGAAAAACAGAGGTA
CAAGCTCTTCAAGTAATCCTTCAACCCCAATCCAACATTCAAAAAAGGAA
TCTAAGGTTGGAGATCAGGATGAAGAATCTGCAACAGTTGATCAGCCTTT
ACTTCTCGATACATCGACAACTACATCAGATGCACCGATTCAGGAGAAAG
CACACACAGATGATAAGGAACCTTCAACCTCTGAAAGTGAAAACCCTACT
ACTCCAAGCAAAAATCCATCTTATGTTGAACAAAAAGAAGCAACATTGTT
TGAAATCGATCGAAGTCAACAACTTCTTGAATCATATCGTGATCGTTTGA
TCaaggaaaaacaagaagaaaaggATCAGGAACATGTCATCATACgtaaa
atctataaaataaatatcGATGAAGGAAAATCAGAAGTGGCAAGTCCAGC
ACCAGAAGATGAACCTATAACAACTGAGGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007266-exon-sc0000075-1491911889:600642..600730 | TCONS_00007266-exon-sc0000075-1491911889:600642..600730 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1510915933:600642..600730 | TCONS_00007266-exon-sc0000075-1510915933:600642..600730 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1575043694:600642..600730 | TCONS_00007266-exon-sc0000075-1575043694:600642..600730 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1491911889:600859..600942 | TCONS_00007266-exon-sc0000075-1491911889:600859..600942 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1510915933:600859..600942 | TCONS_00007266-exon-sc0000075-1510915933:600859..600942 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1575043694:600859..600942 | TCONS_00007266-exon-sc0000075-1575043694:600859..600942 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1491911889:601360..601470 | TCONS_00007266-exon-sc0000075-1491911889:601360..601470 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1510915933:601360..601470 | TCONS_00007266-exon-sc0000075-1510915933:601360..601470 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1575043694:601360..601470 | TCONS_00007266-exon-sc0000075-1575043694:601360..601470 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1491911889:601789..602452 | TCONS_00007266-exon-sc0000075-1491911889:601789..602452 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1510915933:601789..602452 | TCONS_00007266-exon-sc0000075-1510915933:601789..602452 | Clytia hemisphaerica | exon |
| TCONS_00007266-exon-sc0000075-1575043694:601789..602452 | TCONS_00007266-exon-sc0000075-1575043694:601789..602452 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:600642..602452 + |
Blast
The following BLAST results are available for this feature:
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