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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007272 ID=TCONS_00007272|Name=TCONS_00007272|organism=Clytia hemisphaerica|type=transcript|length=638bp
agtttGAAGGAAGCAGAAAAAGATGCCGCAAAGGATGCACTTAAGAAAAA
TCACTTCGAACAACATGCACGTCAAAAGCGAATGATATACAAGAAATTCG
GTCCCGCCCGAACAACCACCGATACAGAAAAGGTGGAAGAGGGCGGCGAA
CCCTCTACTCCTAAACAGGAGAGTGAGTGCAAGGTGGCTGAATTGAAGAC
AGATCAAGACACAAAGGAGAGTGCACAATCGGTCACGAAGGAGGAGACAG
CAAAACCACCAGTACCAAAAAATAATGTCACTATTATTGCCATTGATTCA
GATTAGATATTTCCATTTATGTTTACGAATATTACAGTTAGCAATGattt
atcttttgttttattagTTTAGTTAAAACATATATGaaattttgtgttga
aatattttttatgattttgtccttaattttttcttcattttatctTTGCG
ATTATAATCTAATTTTTAGGTGCCGAAATACTGTAGTCTTATAGTTTCGT
CACCTTAAAAGTTTCTTCTAGGTGTGGTGGAAAAATGCACTGATAAAGAT
CTTATCTAAATTTTCGGCACCTAAAATATCATACGTATAACACATTAGAA
GTGTATTTTTATTGGCGTTAAATACATTGTTGGTGTAC Run BLAST on NCBI transcript from alignment at sc0000075:663363..667409+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007272 ID=TCONS_00007272|Name=TCONS_00007272|organism=Clytia hemisphaerica|type=transcript|length=4047bp|location=Sequence derived from alignment at sc0000075:663363..667409+ (Clytia hemisphaerica)
agtttGAAGGAAGCAGAAAAAGATGCCGCAAAGGATGCACTTAAGAAAAG
TAagcttgttttctttttcaatgctTTTACACTTTCAATCACTGAGGGGG
TGAACCCGTTGCATGCTCTTATATAGGTCTAGAGTTTGACTACTACATAA
ATCAGTTTTCTCTATTAACGGATCGTAATTATGGGTGTGATAATACAATT
GCTGTTATGGGATAAATCatttttgctccggcctaggagcctttaattct
ctcttccgacaatcGTCAAGAtattttttgtctgtttatctaatccgatg
atctattccgatttaacaaaaacggatcactgattccgataatactgtga
tttgattggccgaaaagtATTTAGAAGAGATGACTAACGAAAAGTCGTGG
ACTGGTGAGCTGTGaatactggcaaatctcagtgaaaaattgatcatttt
catccggttattcatgatgttttggacatgatttatgagaagtttgatgg
tGCGTTGTACGTTGTACTGCTACTGTATACTGAATTCAAATACGTGTGTT
TCTCATGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
CCAttacccatttttgcctaattaTCCCCCTGGGGTTTCATCCAATTATG
AGAAAATTGTATTTATAgtaccgtattacttcaaataaacgccctcgttc
ttttaaacgcccccttgaataaacgccctcctaaaattgaaaaaaattaa
ataaacgccccgggcaTTTATTAGAAGTAATACGGTAGGTGCTTTGTCga
tttcaaagaaattgaaTTTCAGTTTGCCAGTGCTGATCGAGTTAAAAGTT
GTCGTATTTTAATCTATATTTCCAGAATTAtttaatactttatttttttc
taaagcacagacattgattttgatattgtttttttctttttcagtaaaCA
AAACGAACACAATGAGAGTGGTATACATATTTTTGAAGGTATGATTTTTC
CAAttacgagatttattttagttgGGGAAAATTTAGTCAAGTCTGCTTTA
ATACAATATGCTGGACGAAAAACGGCATTAATCGAATTCAAATTACACAG
TgtttttgtgctcgttgaaacaCGTTTCTACTACGGAGACGAAAAAGGCA
ATGCTACGCCTTTTCCGTCTCCGTAGTAGATTCTATACAGACAAAGATCG
TATTGTATCGCCTCAAATTCAAATTGACGGGGCGATCTTTACTCGAAAAC
TTTTGAACAATTGAGTCTGTCATTTAAAGCATAGCTTGATCGATTTGACT
CATGTTGGTTGTTGCAAACTAACTTCTGATTCtaaagatttttctaaaac
ttatactacttcttttattttcagtgtCAGTATCATTCAAAGGAAAACAG
CTCGGTGAAGGTACTGGAAGAAGGTATTACCAGACATAACTAATTAATTG
AATTTCATAATTCCAGTGAGAACTTTTAATCAATGGGTGAAAAcaaatga
attttcaaattaaaaggtCGCGGTGAAGACTATCCATCATctattcgtga
tattcatgccttaatgttttatacggaagcgcCCATAATAACGGATGTTT
GCCACTCATTTTGAATTGAAACAACAGAATTACAGTTGGTTCTCGCTAAT
TTGAACTCGAACGGGAAATGTTATTTATTCGAATTAAAAAAcgatttgaa
ttatagaaattattctgggcaattttacaatctatggtggaaaataagtt
cgaattatagaaatattcaaatgatagaagctcgaataagcgagagttca
CTGTAGTGGTAAACGCCCGGGTTATCTTAGGTGCTTCCATATAAGACACT
ACtatgtcatgaatatcatgaatacggGATTTTTAATCTTTATCGCATAC
AGCACCAACTGATACGACGCGCGAAATTCCCATACTGATAAAGAAGTCTT
GAGTTTTGAACCCACTCCGCAATTCTCTTTGGACGTCTGTCATTACTACA
GTTAAGCGAAAAAAATTGTCGTTTTTGTATTCCAAATGCTTTACttgacg
ttttttttttaatagtttGAAGGAAGCAGAAAAAGATGCCGCAAAGGATG
CACTTAAGAAAAGTAagcttgttttctttttcaatgctTTTACACTTTCA
ATCACTGAGGGGGTGAACCCGTTGCATGCTCTTATATAGGTCTAGAGTTT
GACTACTACATAAATCAGTTTTCTCTATTAACGGATCGTAATTATGGGTG
TGATAATACAATTGCTGTTATGGGataaatcattttttagacTACTTTCT
CGACTACAGTACACtgccttctcacagacccagtgatAAATAACGGAttg
aaacttgatggggattgatattcccatatttttggAATgcctggggattt
aaattccattgtttaagtcagaaaattcattggagatgggaaaaatagca
taatattttgcagtgaggattggtttatttgattattttcagtggggaca
aaaattggagcaTAGTTTTCCACTTagaacgatattttggccaatctttc
gggaaggggtcccagtgggtctgtgagaagggggtgttacaATCTGATAC
TGCTATATATTTCTAGTCTGGATTAGTTTACTTTTCGAGTATATGAATTA
ATTTTTCTAACCGCAACTCGAGGACAGAATTGTCCTAATTTCATTGTCAA
AAGAAAAGTGGTCTGGTAATCGAGACTATGTATATCTTTCAGAATTTATC
ATCTCTCTGATCTCTTTAATTCTTTATTCAGAAATCATAGTAGACCCACT
AAGCGTCATAATAATGCATTAGTCAAAGGGTAGATTTCAGatactctaaa
acacccatcTATACTAAACTGTTCGTGTCCTCATACCACATTTAAACAAT
TCCAATGGTATTATAGTAAACTCTCGAGATTCCTTATTTGTTTCTAGTCC
CTCTGTCCAAGGAAAAACCCTCtttaaatactttctataattcgaatctc
tctgtaattcaaatAAGAATTCAAATAAGATCACCCGTCAGAGTTCGAAC
TGTAGTACTAGCTTGTAGGATATGTTTGTGCTGATTTGATCGTTCTCTTA
CTCACCAGATCACTTCGAACAACATGCACGTCAAAAGCGAATGATATACA
AGAAATTCGGTCCCGCCCGAACAACCACCGATACAGAAAAGGTGGAAGAG
GGCGGCGAACCCTCTACTCCTAAACAGGAGAGTGAGTGCAAGGTGGCTGA
ATTGAAGACAGATCAAGACACAAAGGAGAGTGCACAATCGGTCACGAAGG
AGGAGACAGCAAAACCACCAGTACCAAAAAATAATGTCACTATTATTGCC
ATTGATTCAGATTAGATATTTCCATTTATGTTTACGAATATTACAGTTAG
CAATGatttatcttttgttttattagTTTAGTTAAAACATATATGaaatt
ttgtgttgaaatattttttatgattttgtccttaattttttcttcatttt
atctTTGCGATTATAATCTAATTTTTAGGTGCCGAAATACTGTAGTCTTA
TAGTTTCGTCACCTTAAAAGTTTCTTCTAGGTGTGGTGGAAAAATGCACT
GATAAAGATCTTATCTAAATTTTCGGCACCTAAAATATCATACGTATAAC
ACATTAGAAGTGTATTTTTATTGGCGTTAAATACATTGTTGGTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007272-exon-sc0000075-1491911889:663363..663411 | TCONS_00007272-exon-sc0000075-1491911889:663363..663411 | Clytia hemisphaerica | exon |
| TCONS_00007272-exon-sc0000075-1510915933:663363..663411 | TCONS_00007272-exon-sc0000075-1510915933:663363..663411 | Clytia hemisphaerica | exon |
| TCONS_00007272-exon-sc0000075-1575043694:663363..663411 | TCONS_00007272-exon-sc0000075-1575043694:663363..663411 | Clytia hemisphaerica | exon |
| TCONS_00007272-exon-sc0000075-1491911889:666821..667409 | TCONS_00007272-exon-sc0000075-1491911889:666821..667409 | Clytia hemisphaerica | exon |
| TCONS_00007272-exon-sc0000075-1510915933:666821..667409 | TCONS_00007272-exon-sc0000075-1510915933:666821..667409 | Clytia hemisphaerica | exon |
| TCONS_00007272-exon-sc0000075-1575043694:666821..667409 | TCONS_00007272-exon-sc0000075-1575043694:666821..667409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:663363..667409 + |
Blast
The following BLAST results are available for this feature:
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