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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007273 ID=TCONS_00007273|Name=TCONS_00007273|organism=Clytia hemisphaerica|type=transcript|length=377bp
gtttGAAGGAAGCAGAAAAAGATGCCGCAAAGGATGCACTTAAGAAAAAT
CACTTCGAACAACATGCACGTCAAAAGCGAATGATATACAAGAAATTCGG
TCCCGCCCGAACAACCACCGATACAGAAAAGGTGGAAGAGGGCGGCGAAC
CCTCTACTCCTAAACAGGAGAGTGAGTGCAAGGTGGCTGAATTGAAGACA
GATCAAGACACAAAGGAGAGTGCACAATCGGTCACGAAGGAGGAGACAGC
AAAACCACCAGTGTGGTGGAAAAATGCACTGATAAAGATCTTATCTAAAT
TTTCGGCACCTAAAATATCATACGTATAACACATTAGAAGTGTATTTTTA
TTGGCGTTAAATACATTGTTGGTGTAC Run BLAST on NCBI transcript from alignment at sc0000075:663364..667409+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007273 ID=TCONS_00007273|Name=TCONS_00007273|organism=Clytia hemisphaerica|type=transcript|length=4046bp|location=Sequence derived from alignment at sc0000075:663364..667409+ (Clytia hemisphaerica)
gtttGAAGGAAGCAGAAAAAGATGCCGCAAAGGATGCACTTAAGAAAAGT
AagcttgttttctttttcaatgctTTTACACTTTCAATCACTGAGGGGGT
GAACCCGTTGCATGCTCTTATATAGGTCTAGAGTTTGACTACTACATAAA
TCAGTTTTCTCTATTAACGGATCGTAATTATGGGTGTGATAATACAATTG
CTGTTATGGGATAAATCatttttgctccggcctaggagcctttaattctc
tcttccgacaatcGTCAAGAtattttttgtctgtttatctaatccgatga
tctattccgatttaacaaaaacggatcactgattccgataatactgtgat
ttgattggccgaaaagtATTTAGAAGAGATGACTAACGAAAAGTCGTGGA
CTGGTGAGCTGTGaatactggcaaatctcagtgaaaaattgatcattttc
atccggttattcatgatgttttggacatgatttatgagaagtttgatggt
GCGTTGTACGTTGTACTGCTACTGTATACTGAATTCAAATACGTGTGTTT
CTCATGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CAttacccatttttgcctaattaTCCCCCTGGGGTTTCATCCAATTATGA
GAAAATTGTATTTATAgtaccgtattacttcaaataaacgccctcgttct
tttaaacgcccccttgaataaacgccctcctaaaattgaaaaaaattaaa
taaacgccccgggcaTTTATTAGAAGTAATACGGTAGGTGCTTTGTCgat
ttcaaagaaattgaaTTTCAGTTTGCCAGTGCTGATCGAGTTAAAAGTTG
TCGTATTTTAATCTATATTTCCAGAATTAtttaatactttatttttttct
aaagcacagacattgattttgatattgtttttttctttttcagtaaaCAA
AACGAACACAATGAGAGTGGTATACATATTTTTGAAGGTATGATTTTTCC
AAttacgagatttattttagttgGGGAAAATTTAGTCAAGTCTGCTTTAA
TACAATATGCTGGACGAAAAACGGCATTAATCGAATTCAAATTACACAGT
gtttttgtgctcgttgaaacaCGTTTCTACTACGGAGACGAAAAAGGCAA
TGCTACGCCTTTTCCGTCTCCGTAGTAGATTCTATACAGACAAAGATCGT
ATTGTATCGCCTCAAATTCAAATTGACGGGGCGATCTTTACTCGAAAACT
TTTGAACAATTGAGTCTGTCATTTAAAGCATAGCTTGATCGATTTGACTC
ATGTTGGTTGTTGCAAACTAACTTCTGATTCtaaagatttttctaaaact
tatactacttcttttattttcagtgtCAGTATCATTCAAAGGAAAACAGC
TCGGTGAAGGTACTGGAAGAAGGTATTACCAGACATAACTAATTAATTGA
ATTTCATAATTCCAGTGAGAACTTTTAATCAATGGGTGAAAAcaaatgaa
ttttcaaattaaaaggtCGCGGTGAAGACTATCCATCATctattcgtgat
attcatgccttaatgttttatacggaagcgcCCATAATAACGGATGTTTG
CCACTCATTTTGAATTGAAACAACAGAATTACAGTTGGTTCTCGCTAATT
TGAACTCGAACGGGAAATGTTATTTATTCGAATTAAAAAAcgatttgaat
tatagaaattattctgggcaattttacaatctatggtggaaaataagttc
gaattatagaaatattcaaatgatagaagctcgaataagcgagagttcaC
TGTAGTGGTAAACGCCCGGGTTATCTTAGGTGCTTCCATATAAGACACTA
CtatgtcatgaatatcatgaatacggGATTTTTAATCTTTATCGCATACA
GCACCAACTGATACGACGCGCGAAATTCCCATACTGATAAAGAAGTCTTG
AGTTTTGAACCCACTCCGCAATTCTCTTTGGACGTCTGTCATTACTACAG
TTAAGCGAAAAAAATTGTCGTTTTTGTATTCCAAATGCTTTACttgacgt
tttttttttaatagtttGAAGGAAGCAGAAAAAGATGCCGCAAAGGATGC
ACTTAAGAAAAGTAagcttgttttctttttcaatgctTTTACACTTTCAA
TCACTGAGGGGGTGAACCCGTTGCATGCTCTTATATAGGTCTAGAGTTTG
ACTACTACATAAATCAGTTTTCTCTATTAACGGATCGTAATTATGGGTGT
GATAATACAATTGCTGTTATGGGataaatcattttttagacTACTTTCTC
GACTACAGTACACtgccttctcacagacccagtgatAAATAACGGAttga
aacttgatggggattgatattcccatatttttggAATgcctggggattta
aattccattgtttaagtcagaaaattcattggagatgggaaaaatagcat
aatattttgcagtgaggattggtttatttgattattttcagtggggacaa
aaattggagcaTAGTTTTCCACTTagaacgatattttggccaatctttcg
ggaaggggtcccagtgggtctgtgagaagggggtgttacaATCTGATACT
GCTATATATTTCTAGTCTGGATTAGTTTACTTTTCGAGTATATGAATTAA
TTTTTCTAACCGCAACTCGAGGACAGAATTGTCCTAATTTCATTGTCAAA
AGAAAAGTGGTCTGGTAATCGAGACTATGTATATCTTTCAGAATTTATCA
TCTCTCTGATCTCTTTAATTCTTTATTCAGAAATCATAGTAGACCCACTA
AGCGTCATAATAATGCATTAGTCAAAGGGTAGATTTCAGatactctaaaa
cacccatcTATACTAAACTGTTCGTGTCCTCATACCACATTTAAACAATT
CCAATGGTATTATAGTAAACTCTCGAGATTCCTTATTTGTTTCTAGTCCC
TCTGTCCAAGGAAAAACCCTCtttaaatactttctataattcgaatctct
ctgtaattcaaatAAGAATTCAAATAAGATCACCCGTCAGAGTTCGAACT
GTAGTACTAGCTTGTAGGATATGTTTGTGCTGATTTGATCGTTCTCTTAC
TCACCAGATCACTTCGAACAACATGCACGTCAAAAGCGAATGATATACAA
GAAATTCGGTCCCGCCCGAACAACCACCGATACAGAAAAGGTGGAAGAGG
GCGGCGAACCCTCTACTCCTAAACAGGAGAGTGAGTGCAAGGTGGCTGAA
TTGAAGACAGATCAAGACACAAAGGAGAGTGCACAATCGGTCACGAAGGA
GGAGACAGCAAAACCACCAGTACCAAAAAATAATGTCACTATTATTGCCA
TTGATTCAGATTAGATATTTCCATTTATGTTTACGAATATTACAGTTAGC
AATGatttatcttttgttttattagTTTAGTTAAAACATATATGaaattt
tgtgttgaaatattttttatgattttgtccttaattttttcttcatttta
tctTTGCGATTATAATCTAATTTTTAGGTGCCGAAATACTGTAGTCTTAT
AGTTTCGTCACCTTAAAAGTTTCTTCTAGGTGTGGTGGAAAAATGCACTG
ATAAAGATCTTATCTAAATTTTCGGCACCTAAAATATCATACGTATAACA
CATTAGAAGTGTATTTTTATTGGCGTTAAATACATTGTTGGTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007273-exon-sc0000075-1491911889:663364..663411 | TCONS_00007273-exon-sc0000075-1491911889:663364..663411 | Clytia hemisphaerica | exon |
| TCONS_00007273-exon-sc0000075-1510915933:663364..663411 | TCONS_00007273-exon-sc0000075-1510915933:663364..663411 | Clytia hemisphaerica | exon |
| TCONS_00007273-exon-sc0000075-1575043694:663364..663411 | TCONS_00007273-exon-sc0000075-1575043694:663364..663411 | Clytia hemisphaerica | exon |
| TCONS_00007273-exon-sc0000075-1491911889:666821..667032 | TCONS_00007273-exon-sc0000075-1491911889:666821..667032 | Clytia hemisphaerica | exon |
| TCONS_00007273-exon-sc0000075-1510915933:666821..667032 | TCONS_00007273-exon-sc0000075-1510915933:666821..667032 | Clytia hemisphaerica | exon |
| TCONS_00007273-exon-sc0000075-1575043694:666821..667032 | TCONS_00007273-exon-sc0000075-1575043694:666821..667032 | Clytia hemisphaerica | exon |
| TCONS_00007273-exon-sc0000075-1491911889:667293..667409 | TCONS_00007273-exon-sc0000075-1491911889:667293..667409 | Clytia hemisphaerica | exon |
| TCONS_00007273-exon-sc0000075-1510915933:667293..667409 | TCONS_00007273-exon-sc0000075-1510915933:667293..667409 | Clytia hemisphaerica | exon |
| TCONS_00007273-exon-sc0000075-1575043694:667293..667409 | TCONS_00007273-exon-sc0000075-1575043694:667293..667409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000075 | supercontig | sc0000075:663364..667409 + |
Blast
The following BLAST results are available for this feature:
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