TCONS_00007280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007280
Unique NameTCONS_00007280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007280 ID=TCONS_00007280|Name=TCONS_00007280|organism=Clytia hemisphaerica|type=transcript|length=341bp
CCAAGGAAGTGAACACAgagaaaacaacaacaatcaAATGGAAAACAGCT
TATGTAAGACTATGGTTTTGGTAATGGAAGAGATATGTTATGGCGACGAA
GATATTCTGGTCCTTTTTTTGGGGGTCTTTTGAGTTATATAAGGCAATAT
CGTTGATGATGGTTTGTTTGGAGAATCTGGAGGAAGAATGATCATTGTAA
ATTGTTCATGAAGGTGGAAACAACCTGTCAAATTGGATGAAATTTATACT
GAAACGTGGTATTAATGAAAGAGTTTTGATGCGATTTTACGCTGTTTTAG
AATATCAGACTTTTTAGGGACTGGAATTTGATGTGATGTAG
Run BLAST on NCBI

transcript from alignment at sc0000075:29159..30122-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007280 ID=TCONS_00007280|Name=TCONS_00007280|organism=Clytia hemisphaerica|type=transcript|length=964bp|location=Sequence derived from alignment at sc0000075:29159..30122- (Clytia hemisphaerica)
CCAAGGAAGTGAACACAGAGAAAACAACAACAATCAAATGGAAAACAGGC
TAGCCCTCAAAGATTTACCTTATTTCATAAGTTATTTGATAGACTGAACA
TAAAAGCTTGCAATGCATTTTGATTTATGGTCATAATTTCTGTAGACCAG
TAGACCATTAATGTTTTCATGCAGTTAAATTATATTTTTTCGATCCATTC
AATCTGATTCGACCCTGGGCGAAAAGTTTTTCACAAATGGCCTCCAGTGA
TTCGAGCATTTTGCTTGAAAATCATTCGCTTTTCAGTTACAATCTGGAAT
GATACATAATAATGAGAAACGATCTAATATCAATGAGCGCCATTCCAATT
ACCAAATTATCTACAGTCTTCTAAAACAGATACATAGCTCAACCAAAATA
ACTTTCAAATTCTATAAACTTTCCACTAAAACCACAAGAAATTAAAATTA
TAAAACGCCCTGGGTTAATTAAAACTAATTACTGACACAAGTTATCATTA
ACATACTGTAGTCAAAGCATTAAATATTAATGATTGACTAATTTCTAAGG
TTGACCTCAAATATCAAATGTAGATGTTCGAGTCACAAAAATATGAAGAA
AATTGATGGATAGTAGCCAGTAATTAATGATATTCTTATTCTTGGCTCTA
TATTTCTTTGTTTTGTTGTAGCTTATGTAAGACTATGGTTTTGGTAATGG
AAGAGATATGTTATGGCGACGAAGATATTCTGGTCCTTTTTTTGGGGGTC
TTTTGAGTTATATAAGGCAATATCGTTGATGATGGTTTGTTTGGAGAATC
TGGAGGAAGAATGATCATTGTAAATTGTTCATGAAGGTGGAAACAACCTG
TCAAATTGGATGAAATTTATACTGAAACGTGGTATTAATGAAAGAGTTTT
GATGCGATTTTACGCTGTTTTAGAATATCAGACTTTTTAGGGACTGGAAT
TTGATGTGATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004089XLOC_004089Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007280-exon-sc0000075-1575043694:30075..30122TCONS_00007280-exon-sc0000075-1575043694:30075..30122Clytia hemisphaericaexon
TCONS_00007280-exon-sc0000075-1575043694:29159..29451TCONS_00007280-exon-sc0000075-1575043694:29159..29451Clytia hemisphaericaexon
TCONS_00007280-exon-sc0000075-1510915933:30075..30122TCONS_00007280-exon-sc0000075-1510915933:30075..30122Clytia hemisphaericaexon
TCONS_00007280-exon-sc0000075-1510915933:29159..29451TCONS_00007280-exon-sc0000075-1510915933:29159..29451Clytia hemisphaericaexon
TCONS_00007280-exon-sc0000075-1491911889:30075..30122TCONS_00007280-exon-sc0000075-1491911889:30075..30122Clytia hemisphaericaexon
TCONS_00007280-exon-sc0000075-1491911889:29159..29451TCONS_00007280-exon-sc0000075-1491911889:29159..29451Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:29159..30122 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.304314	0	0.36245	0	0.345545	0	0.226487	0.28054	0	0	0.17875	0.371267	0.305232	0	0	0	0	0	0	0.380254	0	0	1.73139	3.09045	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top