TCONS_00007306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007306
Unique NameTCONS_00007306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007306 ID=TCONS_00007306|Name=TCONS_00007306|organism=Clytia hemisphaerica|type=transcript|length=2369bp
CTTTCAGATAATATATTTGTGTCTATGTATCTCTCTCCACTTCAATCAAT
CAGCTCAGTTTGATTTGTTACTACATTGGATCTTGTTCTCGGATTCCATC
ATGGGTCCTCCGATGAGCCCTGCTAATTTTGAGCAAGATTTCATAAAGCA
GTGTTTACACGAGGAAAAGAAGTGTACGAATTGTGGAAAGATTTTTACAG
TAGAATCTCCGAATCACACACCGGTTAGAAAGACGCTCTCCTCTGGAACA
TATTACGGTACTTATACTCGGAGCGTAGATCGGGATGGCAGTAAAGATAC
GGTTTCAGAAAGTGAGGTTTCCGATACTGATTGGTCTTGCAACAGGGGCC
GTTGTTCTTATTTGGTGAAGTATTCGGTTAACGGTGTTTTCAAAGGACAA
ACACGTTTCAGTTATAACAGCGTCGGATTCGATGATGGTGCATCTTCGCT
AAGACAGAGTAGTGTGACCAGCATTGGATCGTCTTTTGGAGCTTTTGAAG
AAGAAGCGAGCAGCGTTGAAGAGAATTATGGGAGGCATGATGATGCATTT
GAGGACGCAAAGGATAACGGGGGTGATGACCATCACGACGAAAGGGACAA
CACAACCTATCAAAGGAGTCTTTCTCCACAATTTGAAGGACAAGACAAGT
CTGACGAACCCGAGGTAAACGAATTTCACGGTGAAAAGCAAAAGACGTCG
AGGAAGGAGCGATGTAGGGAAAACACTCTCCGTTCACAAAGAACCAACGA
AAAGAAAGTCGAGGAAGTCGCcgtaaatgaaaatctaaatccggaaattt
taaagaatcgcgaaatagaaaataaaggTAGAACAGATTCACCCTTGTCT
CATGTGAGGAATGAATCTCCCGCCACTGGTGATAGTGAGAAGAATCATCC
TACAATTTCTACTAAAAGAAACAATTCAGCTAGCAAAAAGCAACCAGCAT
TCAATGATTTTCGTCTATCGACCGCACGAAAAACTTCATCAAAGATTCAA
CAAAAACTTTCCATGTTTGCAAGCACCGATGAGAAGGAGAAGGCAAGAAA
GAATTCGGTAAAAGGTCTCAAACAACTGCAAGAAGATGAGATACGTCAAG
GTTCAACTTTTGCAAACCTTCCTGATTCAAAAAGAAAGCGCATACAACAA
CAACTGTTGGACAGTATGTTCAGATATGCCGAGAAAAAAAACAGCAGTCG
GAAGCAGACAACATCAAGAAGTAGAAACCCAACAACAAGTGGTAAAGAAG
ATAGCAGCGAAACTCCAGAACGAGATTACGGGCTATacttgaaatctttg
aaaacacAAATGAATTACGCGAACGATAAAGTAGCAACTATTCGAAAACA
AAAACAGGAGATCGAGAGACAACTAGCTGAGGCGGAACAAGAATGTAAGT
CGCACAAAACAAATTACGAGGAGGCCGTAGAAGAACATGAAAACGCCATC
AAAGAAGGGCGGGAAATTGAACCACCCGCTGATTTTACATCTCCTACGAG
AAAGCATTCAACTGATCGAATGAGACGAAAGCTTTCCGAAGACTTGAAAG
ATGAAGTTTTGACGATTACTCGTGATTGCATCGCTAACAAGAGCGACCAG
CCCACACAAAAGCAAGAACTAAACCAAGATTTTGCAACCAACGCAAACGA
AACGAACGAGATTGTAATACCAAGCGGCCATCACCTCGATAACAAAGACG
ACCACACAACATATGAACCAATCACAACGCTCTCAGACGATCACGTGACA
AACAACGACGACGGATATGAGAACCATTTACCTCAGCCTTCTGCAACTCG
CAGAAAAAGAAGATTACGCAATCGACGATATGCCGAGGAGCAATCAGTTT
AACCATAAGAAGctacttttaaaaaattattgcgCTCCTCCCACAGAAGA
CAATTCAAGCAGAGGGGAGGGGGGCGTTGACCAACAAAATAACTGAAGGC
CATGTGTGTTTGTAAAAACCATCGTATATTTACTTTACTTctacgttttt
tatataattaagtcaaaaattttcggaTGTTCATACCGTATCGCTTTATT
GCGCAAACGCCTTGTAATTTTTGAGGTGTGAAAAAGCTTCAAAGTCAGCT
CGAATACTTGAGAAAAAACAATTATTAACATATAGTTAAGTTTGCCTTCA
TATCAGTATCCCTTACTGCTACTTATTTCAAAAACGCCCCACCTAGAGTG
GAAGCGTTTATTTTATGGGGACATtattgaagatttttagtttatCATAT
ATCATGTCGTAGTGGATAAGGATAAAGATTTAGTTATGTATGTATTTAGT
TTGTATAGAAGAAAATGAGATGTTTAAAAAATGGTTTTCCTGTTTTTGAC
CCTGAAAACCCCATTTAAA
Run BLAST on NCBI

transcript from alignment at sc0000075:347918..353906-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007306 ID=TCONS_00007306|Name=TCONS_00007306|organism=Clytia hemisphaerica|type=transcript|length=5989bp|location=Sequence derived from alignment at sc0000075:347918..353906- (Clytia hemisphaerica)
CTTTCAGATAATATATTTGTGTCTATGTATCTCTCTCCACTTCAATCAAT
CAGCTCAGTTTGATTTGTTACTACATTGGATCTTGTTCTCGGATTCCATC
ATGGGTCCTCCGATGAGCCCTGCTAATTTTGAGCAAGATTTCATAAAGCA
GTGTTTACACGAGGAAAAGAAGTGTACGAATTGTGGAAAGATTTTTACAG
TAGAATCTCCGAATCACACACCGGTTAGAAAGACGCTCTCCTCTGGAACA
TATTACGGTACTTATACTCGGAGCGTAGATCGGGATGGCAGTAAAGATAC
GGTTTCAGAAAGTGAGGTTTCCGATACTGATTGGTCTTGCAACAGGGGCC
GTTGTTCTTATTTGGTGAAGTATTCGGTTAACGGTGTTTTCAAAGGACAA
ACACGTTTCAGTTATAACAGCGTCGGATTCGATGATGGTGCATCTTCGCT
AAGACAGAGTAGTGTGACCAGCATTGGATCGTCTTTTGGAGCTTTTGAAG
AAGAAGCGAGCAGCGTTGAAGAGAATTATGGGAGGCATGATGATGCATTT
GAGGACGCAAAGGATAACGGGGGTGATGACCATCACGACGAAAGGGACAA
CACAACCTATCAAAGGAGTCTTTCTCCACAATTTGAAGGACAAGACAAGT
CTGACGAACCCGAGGTAAACGAATTTCACGGTGAAAAGCAAAAGACGTCG
AGGAAGGAGCGATGTAGGGAAAACACTCTCCGTTCACAAAGAACCAACGA
AAAGAAAGTCGAGGAAGTCGCCGTAAATGAAAATCTAAATCCGGAAATTT
TAAAGAATCGCGAAATAGAAAATAAAGGTAGAACAGATTCACCCTTGTCT
CATGTGAGGAATGAATCTCCCGCCACTGGTGATAGTGAGAAGAATCATCC
TACAATTTCTACTAAAAGAAACAATTCAGCTAGCAAAAAGCAACCAGCAT
TCAATGATTTTCGTCTATCGACCGCACGAAAAACTTCATCAAAGATTCAA
CAAAAACTTTCCATGTTTGCAAGCACCGATGAGAAGGTATGCTATTTTTT
TGAATACAGCTAACTCTCGCTTATTCGAACTTCTATTGCATTCGAATCTT
ACTATAATTCGAACTTTTTCTCAGTTCCCGTAAGGAAAAAAACCCTCTTA
AAATACTCTCTCTATAATTCGAATATCTCTGTTACTCGAGAAAATAAGAC
TTTCCGTTCAAGTTCGAATTAGCGAGGGTCAACAGTACAGACTCTCTCCT
CTATTTCGATCTTTAAAACTGTCTTCGGCCGAAGGTAAGGCTTAAGATGT
TCATTACAGGGGAGAGGGGTACATGACGTCAAGTTATTTTTAAGTGAGTA
CCTAAGGAGCACCGTAGCACACGCACCAGGAGGCTCAATCGAGCATAACT
CAAATTGTTGTTGACATTTAACCGAAATTAATCTAAAGAGGCATTTTAAG
CTGAGAGAACCATCCTTTTAGAAGGATTCAAATATAGGTTCGAATGAAAG
CCAGCTGAGCTATAGACAGGAGACCCGTCGTGTGTTTTTTTATAATTTGA
TGTACACAAGACGGGTTTGAGCTGTGAGTCCAATATTGGACTGACATTTT
TTACAGTGGGAAATTCGAATTTAGCGCTGTCCTCACTTACTAAAATAAAA
ACCAAATTTCGAAAGTTGCGCTTTCTCTAAGAAAGTGTGACCAGTAAAAG
AATAACAAAATTTGATTGGCTATGTTTTCAACCGTTATTAGGATCTGGGA
AATTCAAACTCTCAGCCCGTACCATGCTATACATTTCGCCATCAATTTAT
CAAAGAAGAAATCATAGCATGGGTCTCCAGGCTATCTGAGCTACAGTATA
CCTGACTTTTCTCAATGCGGACTTAAGGACTTAGTTAGTTGGTCCGTTAA
AGCAGTGTTGTTCCAAATTCTTTATCCTCTTGTACTACAGTAGCGGTCGT
AAATTCTTCCAATTTAAGGGACCCGCTTCGAACATCATGTCACTTAACAT
CCCTCCGAAATCAACCCTCAATTTATACAACAGCCATAAATAAATCTGAA
AGAATGAGTCAGTCAATTATACATAACCAAAATTAAATTTAGGCTTTCCC
ATAGGCTTTTGACTATGGTTTGACCTCCCAATAATTATGTAATCACAATT
TTATGTCTACGTAACTTAAATCCTTAAGCTTAAAGACCGTTATGAAAAAT
AGTGGTTTTAAAACCCCTTAAAATTATGATGAAAAATGGTTAAAAATATT
TACAAACACATTGGAATGAATTCAATCCACTACAAGTACCATATTACACA
ACAATAGAAAATTCTCACGTGGCTGGGAAAGTGTTAAACGGGTAAATGAA
CCTGGTGCTATTCTTTTTCAAAACTTGTAGCTTTTTTGAGAATACGTTTT
AAATCTTATAACTAAACTTTCCCTCTCCTCAATAAAAATAAGGGTTAGAA
ACCTTGGAAAAATAGAGGTTGTTTAAAGTTGTTCCTCAAATAGTTAGAAA
TTTAGAAGTCCTTGTATAGAGCAAAAAACTAAAAAATTTACTATTTCTTC
TCTATCTGAGTCTCTCGCAGGCATGCCGACGAGACGCATATCACTCAGCC
CATTCAGAGAGTGCCTCGAGTAGTAAACATCGATACTTCAAATTTCTTCA
AGGAATTCCCTCGATCGAAGAACTTCTTAACAAAAAATGTCTTCAATTTT
ATAATCTTGGGCACTAAAATGAGCTAAAATGAACCTTCAAAGCTCTTATC
GATTGTTTTTTTTTAATAAACTCTGAAGTTCGCTCTCAGCTGATTATTTA
CCAACTTACCATAGACATTCAACTTTGTAGCTTCTCTTTTTATTCAGCAG
GAGAAGGCAAGAAAGAATTCGGTAAAAGGTATGCCCATGTATTTTGTTTT
TGAAACTTTTAGGAATTTTTACGAAATTTTACATTCTTTACCTCTTTTAT
CGCGGATATGTTTCGCAAATATTGTTAGATTTTGAGCTTTGCTTTTTTTT
GGAATTTACCTTTCTAATGGAGAGACAGCTATAAAGTTAAAATGTCAGAA
CTTCCTTTGTTAAGGTAAAGTATTCCAATTGAATTCTTCGTCCTAGGTCT
CAAACAACTGCAAGAAGATGAGATACGTCAAGGTTCAACTTTTGCAAACC
TTCCTGATTCAAAAAGAAGTAAGATAGATTTTTTTTCAAGTTACTAGGTT
TCAGTCTAGTAGCCTGACAGTAGCTTCTTACTGACAGCTTTCGCCAATTA
TTTCGGCAGACAGAAAACCAGATGCAAATATAATAACACCCCCCCCTTCT
CACAGACCCACTAGGAACCCTTCCAACTGGAAACATTGTGCTATTTTTAC
CATCCCCACCGAATTTTCTACCTAGAAAACAATGGAATTCAAATATGGGA
ATATCAATCCCCATCGAGTTTTGGCCCGTTACTTTTACCCCTACTGACTG
ATAAAATCCCACCAGGTCTGTGAGAAGAGGGTATATAATATTATCGAACC
GAAATCCGTTTAGAGTTTTAAAAATCAGATGAGGCTAAATTGGTACAACA
TCCTTCTGCTTTGTAGAGACTTTTTTAACCGACCTTACTTGAGACCTCCT
TAACAGCGTTTTAAACGTCAACTACTACTTTCCACATATTTTTACATATC
AACAGAGCGCATACAACAACAACTGTTGGACAGTATGTTCAGATATGCCG
AGAAAAAAAACAGCAGTCGGAAGCAGACAACATCAAGAAGTAGAAACCCA
ACAACAAGTGGTAAAGAAGATAGCAGCGAAACTCCAGAACGAGATTACGG
GCTATACTTGAAATCTTTGAAAACACAAATGAATTACGCGAACGATAAAG
TAGCAACTATTCGAAAACAAAAACAGGTATGGTGCCTATTTTTAAACTGA
AATTATCTCATTATCTCTAGCGGTGTCGCAAATAAGTTAAAGGGAGTAAG
TGGTAATCTTGTAGATTGTAGTATTCCATTATGCGATGTAGATCGATAAA
AAATTTACGTGGGTCAGCAATATGATCCTACAAAGTTCTATAAAGATGCA
ACTTAGAAAAAATTTAAGTTAAGTCATAAAATAAGATCAAAATGTGTACA
GCAGTTATATTAACATATTCTTTCTCAATAGGAGATCGAGAGACAACTAG
CTGAGGCGGAACAAGAATGTAAGTCGCACAAAACAAATTACGAGGAGGCC
GTAGAAGAACATGAAAACGCCATCAAAGAAGGGCGGGAAATTGAACCACC
CGCTGATTTTACATCTCCTACGAGAAAGGTAGGCACAGTAGAAACAAGGA
AATTCATCGGGCAGCAGGCTAGACTACCTTATCGGCCCTTTTTACGCCGG
CCCTAATTTAACACCGGCCCCTTTAACGCCGGCCCTTATTACGTCACAGC
CTGATTTTGGGCTTTTAATCTTCGAATCATATAGCCAAAATCCTTTGAAT
AGAGAAAAAAATGGTAAAAAATTAATACCACTTTTAAGTAAACTTTTTAC
ACCGGCCCTTATTACGCCAAAAAAGGGCCGATAAGGTATGTGTAAGAAGA
AGTGAGTTCATCAGATCCACATTTAGATAGTTGGACCTGGGTTTCAGGAA
TAGCAAAGAAATGCAAAAATCCGTTTCTAACATACCAACTAATAAAGTCG
TTTTAAACTGTTCCCTGCTAGCATTCAACTGATCGAATGAGACGAAAGCT
TTCCGAAGACTTGAAAGATGAAGTTTTGACGATTACTCGTGATTGCATCG
CTAACAAGAGCGACCAGCCCACACAAAAGCAAGGTAAGAAAATCTGGCGT
TTACCACACCATACAAATATGAAGATTTAGGTTTACTAAACTGACTAAAC
TGTCGAAATTTGGCCTCACCTTAGCTAATAAAATAGGATCAGGTAAGAAG
CACAGCATAGGTTACGCACGGGGCAATAACTTCTTTTGTCCAAGGTGTAA
AAATAGACTCTACCCCACATTCTGATAAAATTATTTTTCCAACGGTGTAG
AGAAACATTTTATTCGAATCTTTTCTAGGTTGACTCCAAATTCTACAGGA
CTATTAAAGATTCTATGTTATTCTCCAAACTGTAATAGGCAAGTTCCACC
TAAAGTAAATAAAGGCAAAGAGTACTGTTTCGGGATAGATGTTATGGTCT
ACTCTAAATGTAGGCTGCCGGCATCCACAGCGGTTTTTTAAGGGTCTACG
ATTTTGACTTGCCCGAAATGCAAATATTTTTTGTAGAACTAAACCAAGAT
TTTGCAACCAACGCAAACGAAACGAACGAGATTGTAATACCAAGCGGCCA
TCACCTCGATAACAAAGACGACCACACAACATATGAACCAATCACAACGC
TCTCAGACGATCACGTGACAAACAACGACGACGGATATGAGAACCATTTA
CCTCAGCCTTCTGCAACTCGCAGAAAAAGAAGATTACGCAATCGACGATA
TGCCGAGGAGCAATCAGTTTAACCATAAGAAGCTACTTTTAAAAAATTAT
TGCGCTCCTCCCACAGAAGACAATTCAAGCAGAGGGGAGGGGGGCGTTGA
CCAACAAAATAACTGAAGGCCATGTGTGTTTGTAAAAACCATCGTATATT
TACTTTACTTCTACGTTTTTTATATAATTAAGTCAAAAATTTTCGGATGT
TCATACCGTATCGCTTTATTGCGCAAACGCCTTGTAATTTTTGAGGTGTG
AAAAAGCTTCAAAGTCAGCTCGAATACTTGAGAAAAAACAATTATTAACA
TATAGTTAAGTTTGCCTTCATATCAGTATCCCTTACTGCTACTTATTTCA
AAAACGCCCCACCTAGAGTGGAAGCGTTTATTTTATGGGGACATTATTGA
AGATTTTTAGTTTATCATATATCATGTCGTAGTGGATAAGGATAAAGATT
TAGTTATGTATGTATTTAGTTTGTATAGAAGAAAATGAGATGTTTAAAAA
ATGGTTTTCCTGTTTTTGACCCTGAAAACCCCATTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004101XLOC_004101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007306-exon-sc0000075-1575043694:352871..353906TCONS_00007306-exon-sc0000075-1575043694:352871..353906Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1575043694:351029..351056TCONS_00007306-exon-sc0000075-1575043694:351029..351056Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1575043694:350739..350810TCONS_00007306-exon-sc0000075-1575043694:350739..350810Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1575043694:350031..350251TCONS_00007306-exon-sc0000075-1575043694:350031..350251Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1575043694:349629..349775TCONS_00007306-exon-sc0000075-1575043694:349629..349775Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1575043694:349124..349235TCONS_00007306-exon-sc0000075-1575043694:349124..349235Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1575043694:347918..348670TCONS_00007306-exon-sc0000075-1575043694:347918..348670Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1510915933:352871..353906TCONS_00007306-exon-sc0000075-1510915933:352871..353906Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1510915933:351029..351056TCONS_00007306-exon-sc0000075-1510915933:351029..351056Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1510915933:350739..350810TCONS_00007306-exon-sc0000075-1510915933:350739..350810Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1510915933:350031..350251TCONS_00007306-exon-sc0000075-1510915933:350031..350251Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1510915933:349629..349775TCONS_00007306-exon-sc0000075-1510915933:349629..349775Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1510915933:349124..349235TCONS_00007306-exon-sc0000075-1510915933:349124..349235Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1510915933:347918..348670TCONS_00007306-exon-sc0000075-1510915933:347918..348670Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1491911889:352871..353906TCONS_00007306-exon-sc0000075-1491911889:352871..353906Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1491911889:351029..351056TCONS_00007306-exon-sc0000075-1491911889:351029..351056Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1491911889:350739..350810TCONS_00007306-exon-sc0000075-1491911889:350739..350810Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1491911889:350031..350251TCONS_00007306-exon-sc0000075-1491911889:350031..350251Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1491911889:349629..349775TCONS_00007306-exon-sc0000075-1491911889:349629..349775Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1491911889:349124..349235TCONS_00007306-exon-sc0000075-1491911889:349124..349235Clytia hemisphaericaexon
TCONS_00007306-exon-sc0000075-1491911889:347918..348670TCONS_00007306-exon-sc0000075-1491911889:347918..348670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:347918..353906 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0546286	0	0	0.0186193	0.044819	0.12018	0.239168	0	0.154298	0.0836108	0.0656333	0.0285383	0	0.0186532	0	14.2725	3.27758	0.0443474	0.0158091	4.3863	2.58905	5.40488	8.92389	8.87415	8.33516	0.587856	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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