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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007309 ID=TCONS_00007309|Name=TCONS_00007309|organism=Clytia hemisphaerica|type=transcript|length=5199bpRun BLAST on NCBI protein sequence of TCONS_00007309-protein >TCONS_00007309-protein ID=TCONS_00007309-protein|Name=TCONS_00007309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=735bp MTASPVIVSQRAKERDYLLALNDRFQNYVSRVRTMREQGKQIENNTFIAHRun BLAST on NCBI transcript from alignment at sc0000075:381486..406005- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007309 ID=TCONS_00007309|Name=TCONS_00007309|organism=Clytia hemisphaerica|type=transcript|length=24520bp|location=Sequence derived from alignment at sc0000075:381486..406005- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000075:381486..406005- >TCONS_00007309 ID=TCONS_00007309|Name=TCONS_00007309|organism=Clytia hemisphaerica|type=CDS|length=22080bp|location=Sequence derived from alignment at sc0000075:381486..406005- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007309 vs. Swiss-Prot (Human)
Match: LMNA (Prelamin-A/C OS=Homo sapiens GN=LMNA PE=1 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 6.213e-42 Identity = 150/587 (25.55%), Postives = 268/587 (45.66%), Query Frame = 1
Query: 124 SPVIVSQRAKERDYLLALNDRFQNYVSRVRTMREQGKQIENNTFIAHTQALENELFEVKSIYEKELETCRGQLDSMTSERNAYQLEASKKGALATEYQDKYNNELTTRK-KLENALADAHRLLSEKDSLI--QELRITIAQHQNAHL-----DTTKERDALQSTLNAVQTLCDSESKARADLEASVQKLSDQLTFERQLHDKALMELNNKLSAAERAISIADEKLREHDIVDDNLAQTIAKMRMQTQAEFRRFQDESEAAYQASLSQIKGQLDAESKTLAQSNEENIHLKAIIEEMNAKIGKLDSRCNSVEEQNRSLIHTLECERQQAQNTIKELEHKLREMQEHLNAKIRELNVAYNAQIPLDLEIEAFANLLDAEEKRLSVALANPPSELVQTARGDLVSSRGHYTGVRSMPGSPRKPVSGINNSPTNFSARPKSVPINEDTKELPRSDSPGKPGSPGAYYLPGIGDNSSSTHHVRIFHVDPAGKFIRIFNNSNYQDENIGGYIIQQNMNGRPVGMFRFPPKTILKASSYTTVWSASSLAKHNPPSDFLWRAQPVWRTGINTTTILSKPNGMAISWTTPVKPYGI 1860
SP ++ R +E++ L LNDR Y+ RVR++ + + + + E+ +K+ YE EL R LDS+ ER QLE SK + E++ EL R K E L A L + ++L+ +E ++ A + L D + L++ L + E R D E +Q + ++L F++ ++ + L E + R + I + K RE + LA + ++R Q + + +++ E E Y A L + + S + ++EE + I+ ++A++ +L + + E + R L +L ER ++ + E E ++ EM+ + ++ E + ++ LD+EI A+ LL+ EE+RL ++ PS Q +RG S G S+ RK S S ++FS ++ ++ V + VD GKF+R+ N SN +D+++G + I++ P+ +RFPPK LKA T+W+A + A H+PP+D +W+AQ W G + T L G ++ V+ +
Sbjct: 22 SPTRIT-RLQEKEDLQELNDRLAVYIDRVRSLETENAGLRLR-ITESEEVVSREVSGIKAAYEAELGDARKTLDSVAKERARLQLELSK---VREEFK-----ELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTALSEKRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRVDAENRLQTMKEELDFQKNIYSEELRETKRRHET--RLVEIDNGKQRE---FESRLADALQELRAQHEDQVEQYKKELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQKQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEEERLRLS----PSPTSQRSRGRASSHSSQTQGGGSVT-KKRKLES--TESRSSFS------------------------------------QHARTSGRVAVEEVDEEGKFVRLRNKSN-EDQSMGNWQIKRQNGDDPLLTYRFPPKFTLKAGQVVTIWAAGAGATHSPPTDLVWKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTV 549 The following BLAST results are available for this feature:
BLAST of TCONS_00007309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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