TCONS_00007333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007333
Unique NameTCONS_00007333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007333 ID=TCONS_00007333|Name=TCONS_00007333|organism=Clytia hemisphaerica|type=transcript|length=252bp
agtttccatataaggtaatacgataataaagtgcactctcctccattggt
tatagcctccctctgtatccgagcctgatATATTAACCCGAAAACATACA
AGAAGAACCAACGTTATTTCTTACAATGTAGTAATGGAGTAGCCTCTTGT
CAAGCATGTTGGCCATCCAGTCTAGTCTTCAAAGAGGATTGCAATCAATG
TCTTTATTCTCAACATGACGAATGTGTTACATCTAAACCGTTCAAACCAG
CT
Run BLAST on NCBI

transcript from alignment at sc0000075:670994..671598-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007333 ID=TCONS_00007333|Name=TCONS_00007333|organism=Clytia hemisphaerica|type=transcript|length=605bp|location=Sequence derived from alignment at sc0000075:670994..671598- (Clytia hemisphaerica)
AGTTTCCATATAAGGTAATACGATAATAAAGTGCACTCTCCTCCATTGGT
TATAGCCTCCCTCTGTATCCGAGCCTGATATATTAACCCGAAAACATACA
AGAAGAACCAACGTTATTTCTTACAATGTAGTAATGGAGTAGCCTCTTGT
CAAGCATGTTGGCCATCCAGTCTAGTCTTCAAAGAGGATTGCAATCAATG
TCTTTATTCTCAACATGGTAAGATATTGTTTATTTGTGTCTCCGAAATTT
TAATCGAATTTGTTTCGAAAAAGTTTTAAGTTTGTTTCATCGTTTTAAGG
AACAANAATCTAGTCTTCAAAGAGGATTGCAATCAATGTCTTTATTCTCA
ACATGGTAAGATATTGTTTATTTGTGTCTCCGAAATTTTAATCGAATTTG
TTTCGAAAAAGTTTTAAGTTTGTTTCATCGTTTTAAGGAACAAGAAATAA
GGGGAACTACCAAAAGACACCTAGATTTCGTGCAAATTCTTGACTTTTAG
TTAATCCTACCATCTTGATGTCAGATATAAAACATTTTGACAAAGCGTAT
TTTTATCCACTATTTTTCAGACGAATGTGTTACATCTAAACCGTTCAAAC
CAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004112XLOC_004112Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007333-exon-sc0000075-1575043694:671382..671598TCONS_00007333-exon-sc0000075-1575043694:671382..671598Clytia hemisphaericaexon
TCONS_00007333-exon-sc0000075-1575043694:670994..671028TCONS_00007333-exon-sc0000075-1575043694:670994..671028Clytia hemisphaericaexon
TCONS_00007333-exon-sc0000075-1510915933:671382..671598TCONS_00007333-exon-sc0000075-1510915933:671382..671598Clytia hemisphaericaexon
TCONS_00007333-exon-sc0000075-1510915933:670994..671028TCONS_00007333-exon-sc0000075-1510915933:670994..671028Clytia hemisphaericaexon
TCONS_00007333-exon-sc0000075-1491911889:671382..671598TCONS_00007333-exon-sc0000075-1491911889:671382..671598Clytia hemisphaericaexon
TCONS_00007333-exon-sc0000075-1491911889:670994..671028TCONS_00007333-exon-sc0000075-1491911889:670994..671028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:670994..671598 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.76376	0.266444	0	1.09521	0	0.870797	1.10205	0.948817	3.01813	0	8.47431	4.33824	0	0	13.8504	7.70388	0	0	0	0	0.0616935	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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