TCONS_00007343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007343
Unique NameTCONS_00007343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2013

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007343 ID=TCONS_00007343|Name=TCONS_00007343|organism=Clytia hemisphaerica|type=transcript|length=2013bp
TTTTAATCTTAGATTTAAATCAATCCCCATTATCAAATTTCGGTTATCTT
AATTGTTTAGCTggtattcttactttttatgcttaaaatcttatttttat
tttttagaagaATGCATAACAGCTAGTAAAACTGAAGTAAAAAACCATCA
GCCAAAATGGTCAACAAAGTCCGTGATCGTTGGATGGCACGGTCGTCACA
TATTTTATTAACCTCTATAGTAATGttgattgtttttatgaaaGACACAC
AACTCAAAGAGAATCTTTATAATGGAAATTTATACCAAGTTGCTGCTTAT
TTGACATTAGGAATTGTTTCTACAGTCCTGTATTTCATCACAAGTTTCAT
GGACCCTGGATATGTAAGGTATAATACAGTAGATGTAGAAACAGGTGTTG
TATTTAATACTAAAGATGACCAAGCCGAGATTCTGACCACCAATGAACAG
TTAGATTCGTCAGAGACATCCTGCATGTTAACTACCACAAGTGATGCACG
GAGTATCAGGTTGCGGCGGTGTGGGTTTTGTGAGTTGATGCAACCGCTGC
GTGCAAAACATTGTAATGAGTGTCAACATTGCATCAGACGTTATGATCAC
CATTGTCCTTGGATTGGAAATTGTGTCGGTGAACGAAATCATAaattctt
tttatcatttttattctCAGAGACATTACTTGTAACATGGACGAGTTATG
TTACAATTAAAGCTTTCCACCATGAGCCAGCATGGAAATTATGGTTTGAG
AAGAATTGgatgtttctatttttaacttttttcctaATCTGCAGTTTACT
GGTTGTGGGATTACTATGGATTTGTCATTCATACATGATGTTTACAGCTC
AAACCACTTGGGAATTCATGTCTCGACCTAGGATTTCGTATTTGAAGAAG
TTCCCTGAAAATTATAATCCTTTTCATCAAGGTTACTTTTGGAATATGTT
AAGTTTTCTATGTTATTTCAGAATCACTAATTGGGATGATGTATACCATG
CTACTTAAAgcatttaactctccagggaaaCTGAAGGATGATTCAAATTT
TGGATGTTGTCATGATCCTATACTAGCTGcaagaaaaaagaaatgatTTG
ATTCTTTAAAAGTTGAATGGTGTCAAATGTTTATTCATTAAGATACTAAC
AGATAACAGTACTGCAATGCAATTCAATCGGATGGTAAGCAGGAACCCAA
CCTGTTTTTGGCTCTAATGGTTGATATAACAACTCTTTTTTAACACTCAA
ATAATGATATTGGGCAATACTTTGCTTTGGATTGAACGGATTTTATGGCT
AGAGATGTTCAGATATCAATGAAATAAACGAGAGCTTCTAAGACGTCAAA
ATGATGACTTTGTACCATATGTGAATTACCTTTGTATGTGGATCTGAgtg
aattaatttttgcaagcacagagaatgaaaatttttaccAGGGTAAAATT
TCGCAAAACAGCCTTCTTTTGACctaattaatttcattttccttggggTT
TAAGgccaaaaatcacgattttagATTTTACGCAAGGATTGTATTTTTCG
TATTTCGcgaatcaaaagatttttaaacatttttgtgCGCATtagttttc
ccaaatttttgggaaaactCGCGAAACTTGTGAAATATAATCCTCAGGTA
ATATACTCCACTAAAGAATTGCCAGTTTGCCATAGTTGGTCGATGTTATG
CTTATATTCCGTTGATGATTTCTGATGTACTGGTGTTTCTTACATTCGGA
AGCCCCTTGGAAAGAAATAGAAGGttgattataaaaaaacgtcattgcat
ttttgatattttttaaaaatgatttactCAGAGTGTGTAACTGTAAtgtt
tttagctgaaattttctgttttcttagAAACAATTTTCAAGCTTCTCATG
GACCTTCATACAGAGTTTTATTCTGTCTAAGTGTTTTCAcataatttgtt
ttgtttaattttgaaatttgtaacATTAcagttttatttaaaaaatgttt
tgttatctgaaag
Run BLAST on NCBI

protein sequence of TCONS_00007343-protein

>TCONS_00007343-protein ID=TCONS_00007343-protein|Name=TCONS_00007343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MVNKVRDRWMARSSHILLTSIVMLIVFMKDTQLKENLYNGNLYQVAAYLT
LGIVSTVLYFITSFMDPGYVRYNTVDVETGVVFNTKDDQAEILTTNEQLD
SSETSCMLTTTSDARSIRLRRCGFCELMQPLRAKHCNECQHCIRRYDHHC
PWIGNCVGERNHKFFLSFLFSETLLVTWTSYVTIKAFHHEPAWKLWFEKN
WMFLFLTFFLICSLLVVGLLWICHSYMMFTAQTTWEFMSRPRISYLKKFP
ENYNPFHQGYFWNMLSFLCYFRITNWDDVYHAT
Run BLAST on NCBI

transcript from alignment at sc0000075:304002..306014

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007343 ID=TCONS_00007343|Name=TCONS_00007343|organism=Clytia hemisphaerica|type=transcript|length=2013bp|location=Sequence derived from alignment at sc0000075:304002..306014 (Clytia hemisphaerica)
ctttcagataacaaaacattttttaaataaaactgTAATgttacaaattt
caaaattaaacaaaacaaattatgTGAAAACACTTAGACAGAATAAAACT
CTGTATGAAGGTCCATGAGAAGCTTGAAAATTGTTTctaagaaaacagaa
aatttcagctaaaaacaTTACAGTTACACACTCTGagtaaatcattttta
aaaaatatcaaaaatgcaatgacgtttttttataatcaaCCTTCTATTTC
TTTCCAAGGGGCTTCCGAATGTAAGAAACACCAGTACATCAGAAATCATC
AACGGAATATAAGCATAACATCGACCAACTATGGCAAACTGGCAATTCTT
TAGTGGAGTATATTACCTGAGGATTATATTTCACAAGTTTCGCGagtttt
cccaaaaatttgggaaaactaATGCGcacaaaaatgtttaaaaatctttt
gattcgCGAAATACGAAAAATACAATCCTTGCGTAAAATctaaaatcgtg
atttttggcCTTAAAccccaaggaaaatgaaattaattagGTCAAAAGAA
GGCTGTTTTGCGAAATTTTACCCTggtaaaaattttcattctctgtgctt
gcaaaaattaattcacTCAGATCCACATACAAAGGTAATTCACATATGGT
ACAAAGTCATCATTTTGACGTCTTAGAAGCTCTCGTTTATTTCATTGATA
TCTGAACATCTCTAGCCATAAAATCCGTTCAATCCAAAGCAAAGTATTGC
CCAATATCATTATTTGAGTGTTAAAAAAGAGTTGTTATATCAACCATTAG
AGCCAAAAACAGGTTGGGTTCCTGCTTACCATCCGATTGAATTGCATTGC
AGTACTGTTATCTGTTAGTATCTTAATGAATAAACATTTGACACCATTCA
ACTTTTAAAGAATCAAatcatttcttttttcttgCAGCTAGTATAGGATC
ATGACAACATCCAAAATTTGAATCATCCTTCAGtttccctggagagttaa
atgcTTTAAGTAGCATGGTATACATCATCCCAATTAGTGATTCTGAAATA
ACATAGAAAACTTAACATATTCCAAAAGTAACCTTGATGAAAAGGATTAT
AATTTTCAGGGAACTTCTTCAAATACGAAATCCTAGGTCGAGACATGAAT
TCCCAAGTGGTTTGAGCTGTAAACATCATGTATGAATGACAAATCCATAG
TAATCCCACAACCAGTAAACTGCAGATtaggaaaaaagttaaaaatagaa
acatcCAATTCTTCTCAAACCATAATTTCCATGCTGGCTCATGGTGGAAA
GCTTTAATTGTAACATAACTCGTCCATGTTACAAGTAATGTCTCTGagaa
taaaaatgataaaaagaattTATGATTTCGTTCACCGACACAATTTCCAA
TCCAAGGACAATGGTGATCATAACGTCTGATGCAATGTTGACACTCATTA
CAATGTTTTGCACGCAGCGGTTGCATCAACTCACAAAACCCACACCGCCG
CAACCTGATACTCCGTGCATCACTTGTGGTAGTTAACATGCAGGATGTCT
CTGACGAATCTAACTGTTCATTGGTGGTCAGAATCTCGGCTTGGTCATCT
TTAGTATTAAATACAACACCTGTTTCTACATCTACTGTATTATACCTTAC
ATATCCAGGGTCCATGAAACTTGTGATGAAATACAGGACTGTAGAAACAA
TTCCTAATGTCAAATAAGCAGCAACTTGGTATAAATTTCCATTATAAAGA
TTCTCTTTGAGTTGTGTGTCtttcataaaaacaatcaaCATTACTATAGA
GGTTAATAAAATATGTGACGACCGTGCCATCCAACGATCACGGACTTTGT
TGACCATTTTGGCTGATGGTTTTTTACTTCAGTTTTACTAGCTGTTATGC
ATtcttctaaaaaataaaaataagattttaagcataaaaagtaagaatac
cAGCTAAACAATTAAGATAACCGAAATTTGATAATGGGGATTGATTTAAA
TCTAAGATTAAAA

Coding sequence (CDS) from alignment at sc0000075:304002..306014

>TCONS_00007343 ID=TCONS_00007343|Name=TCONS_00007343|organism=Clytia hemisphaerica|type=CDS|length=852bp|location=Sequence derived from alignment at sc0000075:304002..306014 (Clytia hemisphaerica)
TTAAGTAGCATGGTATACATCATCCCAATTAGTGATTCTGAAATAACATA
GAAAACTTAACATATTCCAAAAGTAACCTTGATGAAAAGGATTATAATTT
TCAGGGAACTTCTTCAAATACGAAATCCTAGGTCGAGACATGAATTCCCA
AGTGGTTTGAGCTGTAAACATCATGTATGAATGACAAATCCATAGTAATC
CCACAACCAGTAAACTGCAGATtaggaaaaaagttaaaaatagaaacatc
CAATTCTTCTCAAACCATAATTTCCATGCTGGCTCATGGTGGAAAGCTTT
AATTGTAACATAACTCGTCCATGTTACAAGTAATGTCTCTGagaataaaa
atgataaaaagaattTATGATTTCGTTCACCGACACAATTTCCAATCCAA
GGACAATGGTGATCATAACGTCTGATGCAATGTTGACACTCATTACAATG
TTTTGCACGCAGCGGTTGCATCAACTCACAAAACCCACACCGCCGCAACC
TGATACTCCGTGCATCACTTGTGGTAGTTAACATGCAGGATGTCTCTGAC
GAATCTAACTGTTCATTGGTGGTCAGAATCTCGGCTTGGTCATCTTTAGT
ATTAAATACAACACCTGTTTCTACATCTACTGTATTATACCTTACATATC
CAGGGTCCATGAAACTTGTGATGAAATACAGGACTGTAGAAACAATTCCT
AATGTCAAATAAGCAGCAACTTGGTATAAATTTCCATTATAAAGATTCTC
TTTGAGTTGTGTGTCtttcataaaaacaatcaaCATTACTATAGAGGTTA
ATAAAATATGTGACGACCGTGCCATCCAACGATCACGGACTTTGTTGACC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004122XLOC_004122Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007343-proteinTCONS_00007343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007343-exon-sc0000075-1491911889:304002..306014TCONS_00007343-exon-sc0000075-1491911889:304002..306014Clytia hemisphaericaexon
TCONS_00007343-exon-sc0000075-1510915933:304002..306014TCONS_00007343-exon-sc0000075-1510915933:304002..306014Clytia hemisphaericaexon
TCONS_00007343-exon-sc0000075-1575043694:304002..306014TCONS_00007343-exon-sc0000075-1575043694:304002..306014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:304002..306014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
52.8823	53.8891	16.8561	10.9795	15.4086	11.3378	11.2766	11.9773	8.91589	7.6978	9.70321	7.12507	6.06881	6.11236	7.61596	7.94539	8.35603	9.26073	5.97899	5.55654	12.3023	10.406	41.7604	35.9778	7.58017	10.8167	8.89885	7.56889	25.5168	26.5536
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001594Palmitoyltrfase_DHHC
Blast
[Close]
BLAST of TCONS_00007343 vs. Swiss-Prot (Human)
Match: ZDH12 (Probable palmitoyltransferase ZDHHC12 OS=Homo sapiens GN=ZDHHC12 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.081e-27
Identity = 95/272 (34.93%), Postives = 143/272 (52.57%), Query Frame = 1 
Query:  184 MARSSHILLTSIVMLIVFMKDTQLKENLYNGNLYQVAAYLTLGIVSTVLYFITSFMDPGYVRYNTVDVETGVVFNTKDDQAEILTTNEQLDSSETSCMLTTTSDARSIRLRRCGFCELMQPLRAKHCNECQHCIRRYDHHCPWIGNCVGERNHKXXXXXXXXXXXXVTWTSYVTIKAFHHEPAWKLWFEKNWMFLFLTF-FLICSLLVVGLLWICHSYMMFTAQTTWEFMSRPRISYLKKFPENYNPFHQGYFWNMLSFLCYFRITNWDDVY 996
            + R+ H +LT  + L++F+ DT+L++    G L     +L L + S +LY   S MDPGYV                          E+L   +T+ +        +I LRRC +C ++QPLRA+HC EC+ C+RRYDHHCPW+ NCVGERNH  F+ +L  + +++ W  Y+          W  W   +   LF TF  L    LV  LL + H Y++ +  TTWEF+S  RI+YL++ P   NPF +G   N+  F C +   +W+ ++
Sbjct:   12 LVRTGHTVLTWGITLVLFLHDTELRQWEEQGELLLPLTFLLLVLGSLLLYLAVSLMDPGYVNVQP-------------------QPQEELKEEQTAMV------PPAIPLRRCRYCLVLQPLRARHCRECRRCVRRYDHHCPWMENCVGERNHPLFVVYLALQLVVLLWGLYLAWSGLRFFQPWGQWLRSS-GLLFATFLLLSLFSLVASLLLVSHLYLVASNTTTWEFISSHRIAYLRQRPS--NPFDRGLTRNLAHFFCGWPSGSWETLW 255
The following BLAST results are available for this feature:
BLAST of TCONS_00007343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZDH122.081e-2734.93Probable palmitoyltransferase ZDHHC12 OS=Homo sapi... [more]
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