TCONS_00007349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007349
Unique NameTCONS_00007349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007349 ID=TCONS_00007349|Name=TCONS_00007349|organism=Clytia hemisphaerica|type=transcript|length=534bp
TTGAGACAAAGATCATTGACCCCCCTCCAAGATAAACAtatgaaaatcag
agaaaaatataatttatacATCTGTCAGGCTGTTTTTAGATGAGTAAATT
GAATGAAGAGTTAGTGGCTTGAGTCTGGAGCAGTTTTGTTTTTTCCTTGG
TTAAGACAGGCATTCCAATTTTCAGCTGGGTCAGCCACATTTCTAGTCCA
TAATGGGAGCATTTATCTCGAAAATTGAAAGTGGTGGCTGGTTTCCATGC
CTCTGTGGTGACGCAATCATCTTTTTTGTTGTCAAGACATTGGTTACACG
TTTCACTGGATTGTACTCAATGGCAACAAGCTTGACAATAAGCATTTCCT
CCGAGACATTGGACGGAGTAACTTGGGTATCAAAAATATTGTAGTTTCCA
TCAGCTTTTCTATAGCATACTGGTGGTGTTGTGCCGGTGATGTCGGGAAC
TTTCAAACTGCTGACAACTAGAATGAAAGATGACATTTCTATAGATTGAT
GGTTGAAGGATAGTTGACTGTCAGCTGATCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000075:428387..428920

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007349 ID=TCONS_00007349|Name=TCONS_00007349|organism=Clytia hemisphaerica|type=transcript|length=534bp|location=Sequence derived from alignment at sc0000075:428387..428920 (Clytia hemisphaerica)
CTTTGATCAGCTGACAGTCAACTATCCTTCAACCATCAATCTATAGAAAT
GTCATCTTTCATTCTAGTTGTCAGCAGTTTGAAAGTTCCCGACATCACCG
GCACAACACCACCAGTATGCTATAGAAAAGCTGATGGAAACTACAATATT
TTTGATACCCAAGTTACTCCGTCCAATGTCTCGGAGGAAATGCTTATTGT
CAAGCTTGTTGCCATTGAGTACAATCCAGTGAAACGTGTAACCAATGTCT
TGACAACAAAAAAGATGATTGCGTCACCACAGAGGCATGGAAACCAGCCA
CCACTTTCAATTTTCGAGATAAATGCTCCCATTATGGACTAGAAATGTGG
CTGACCCAGCTGAAAATTGGAATGCCTGTCTTAACCAAGGAAAAAACAAA
ACTGCTCCAGACTCAAGCCACTAACTCTTCATTCAATTTACTCATCTAAA
AACAGCCTGACAGATgtataaattatatttttctctgattttcataTGTT
TATCTTGGAGGGGGGTCAATGATCTTTGTCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004128XLOC_004128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007349-exon-sc0000075-1491911889:428387..428920TCONS_00007349-exon-sc0000075-1491911889:428387..428920Clytia hemisphaericaexon
TCONS_00007349-exon-sc0000075-1510915933:428387..428920TCONS_00007349-exon-sc0000075-1510915933:428387..428920Clytia hemisphaericaexon
TCONS_00007349-exon-sc0000075-1575043694:428387..428920TCONS_00007349-exon-sc0000075-1575043694:428387..428920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075supercontigsc0000075:428387..428920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.218325	0.319351	0.247198	0	0.294423	0.465314	0.561381	0.525558	0.551934	0.227886	0.774172	0.799716	0.436132	0	0.686284	0.333302	0.245843	0.592112	0	0	0.527721	0.463327	0.500653	0.455167	0.937622	1.15061	0.299366	0.319492	0.121162	0.493778
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top