TCONS_00007414 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007414
Unique NameTCONS_00007414
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007414 ID=TCONS_00007414|Name=TCONS_00007414|organism=Clytia hemisphaerica|type=transcript|length=447bp
CCAAACCAGTgacaatcaccttggccaacatcccCAAAACCACCgacaat
caccttggccaacatctccAAAAAACCAGCCACAATCACCCAAGCCAGAT
ATTAGTTGCAGATTTCGTTATGCacttgataaaattttaatggttcgttt
cataaagtttttcaaagaatcTGGTCTCCTTCCGTTCGTATGCAACAAAA
ATTGTACGCTTCATTTCCCAAACTACTTTTGTATCTATGAATGTCCATCC
TCAAAATCTCTTAGTGTTCGGTAAAAGTGATGGTTATGAATTAACCCCAA
GAGATATCGGAAgattcaataaaaatatttcatcctgtcagctttcagtt
agagcgTCAACTTGAACAGGGAGTTGCGATAGCCATTATGAACATGACGT
CACGTGGTtattagcaaagtagactcagttggcAGAGGGCGGCCACC
Run BLAST on NCBI

transcript from alignment at sc0000076:103970..104416

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007414 ID=TCONS_00007414|Name=TCONS_00007414|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0000076:103970..104416 (Clytia hemisphaerica)
GGTGGCCGCCCTCTgccaactgagtctactttgctaataACCACGTGACG
TCATGTTCATAATGGCTATCGCAACTCCCTGTTCAAGTTGAcgctctaac
tgaaagctgacaggatgaaatatttttattgaatcTTCCGATATCTCTTG
GGGTTAATTCATAACCATCACTTTTACCGAACACTAAGAGATTTTGAGGA
TGGACATTCATAGATACAAAAGTAGTTTGGGAAATGAAGCGTACAATTTT
TGTTGCATACGAACGGAAGGAGACCAgattctttgaaaaactttatgaaa
cgaaccattaaaattttatcaagtGCATAACGAAATCTGCAACTAATATC
TGGCTTGGGTGATTGTGGCTGGTTTTTTggagatgttggccaaggtgatt
gtcGGTGGTTTTGgggatgttggccaaggtgattgtcACTGGTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004172XLOC_004172Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007414-exon-sc0000076-1491911889:103970..104416TCONS_00007414-exon-sc0000076-1491911889:103970..104416Clytia hemisphaericaexon
TCONS_00007414-exon-sc0000076-1510915933:103970..104416TCONS_00007414-exon-sc0000076-1510915933:103970..104416Clytia hemisphaericaexon
TCONS_00007414-exon-sc0000076-1575043694:103970..104416TCONS_00007414-exon-sc0000076-1575043694:103970..104416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:103970..104416 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.962932	1.49834	1.94447	2.72162	2.07761	1.17038	3.5398	2.0059	3.14129	5.29743	4.54042	4.0945	0	3.04512	4.24072	3.92372	1.2684	1.98254	4.42775	4.05625	1.36141	3.0035	0.194123	0.343106
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007414 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top