TCONS_00007415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007415
Unique NameTCONS_00007415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007415 ID=TCONS_00007415|Name=TCONS_00007415|organism=Clytia hemisphaerica|type=transcript|length=572bp
CGAGAAAATGGAGAATATCCTGATGCTATATTACTTTACCAAAAAGTTAC
CGAAAGGCTGAATTCTACCTTAGGGAAAAACAATAAACAAACTCTTAAAA
GTGAATATTGGCTGGCTTGGTGTTATTTCCATCAGAATCTTTATAAAAAA
GCTGCCGCGATTTTTAAAGACGTACTTGAGAGACAAACTACTACATTAGG
TTGTGATCACGAAGACACCATACAAACCGCTTTATGGATGAAGAAATCTT
ACACCAACATAGCATAAGAAACCGCGGTTGGAATGAGTATCAgttgaatt
tctgttgtttATATGTTGTcaagaatgtttttttgaatgttttattATCA
GTGACAATTTctattatcaatttatttttttcacttttaaaactTGTAAG
TTGTTTTGCATAAGATTCTCTACGTACTAAGATTCCTTTGacacttttct
agcggaaaaagaccaggactccGGGTAGTTGAAAAAGAAGCTTAGGAAAG
TTAGGCAGTTCCGTGAGTAAACACAAGACtttccgtacctttagaaacaa
acTCTTTCCAATCTCATGTCAG
Run BLAST on NCBI

transcript from alignment at sc0000076:112796..113367

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007415 ID=TCONS_00007415|Name=TCONS_00007415|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0000076:112796..113367 (Clytia hemisphaerica)
CTGACATGAGATTGGAAAGAgtttgtttctaaaggtacggaaaGTCTTGT
GTTTACTCACGGAACTGCCTAACTTTCCTAAGCTTCTTTTTCAACTACCC
ggagtcctggtctttttccgctagaaaagtgtCAAAGGAATCTTAGTACG
TAGAGAATCTTATGCAAAACAACTTACAagttttaaaagtgaaaaaaata
aattgataatagAAATTGTCACTGATaataaaacattcaaaaaaacattc
ttgACAACATATaaacaacagaaattcaacTGATACTCATTCCAACCGCG
GTTTCTTATGCTATGTTGGTGTAAGATTTCTTCATCCATAAAGCGGTTTG
TATGGTGTCTTCGTGATCACAACCTAATGTAGTAGTTTGTCTCTCAAGTA
CGTCTTTAAAAATCGCGGCAGCTTTTTTATAAAGATTCTGATGGAAATAA
CACCAAGCCAGCCAATATTCACTTTTAAGAGTTTGTTTATTGTTTTTCCC
TAAGGTAGAATTCAGCCTTTCGGTAACTTTTTGGTAAAGTAATATAGCAT
CAGGATATTCTCCATTTTCTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004173XLOC_004173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007415-exon-sc0000076-1491911889:112796..113367TCONS_00007415-exon-sc0000076-1491911889:112796..113367Clytia hemisphaericaexon
TCONS_00007415-exon-sc0000076-1510915933:112796..113367TCONS_00007415-exon-sc0000076-1510915933:112796..113367Clytia hemisphaericaexon
TCONS_00007415-exon-sc0000076-1575043694:112796..113367TCONS_00007415-exon-sc0000076-1575043694:112796..113367Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:112796..113367 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293204	0.0953069	0	0.216528	0.527204	0.416603	0.251307	0.117635	0.329437	0	0.891166	0.585818	1.36501	2.02511	2.38637	2.26316	0.440215	0.376005	1.35063	3.69641	0.0944956	0	0.112061	0.10188	0	0	0.268028	0.42907	0.108478	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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