TCONS_00007416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007416
Unique NameTCONS_00007416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007416 ID=TCONS_00007416|Name=TCONS_00007416|organism=Clytia hemisphaerica|type=transcript|length=535bp
ACTATTTGAAAAATGGCTACTGCTAGTACAAACCATGACGAAAAGTCAGA
TTTGTTTTTATCACATGACTGGGGCGAAGATGGAAAAACAAACCATGAGA
AAGTCGCTAAAATCAATCAAGCCATCAAGAATCTTGGCTATCGAACGTGG
TTTGATAACGAGCGAATGGTAGGCAATATCAGAGAACAAATGGCTAACGG
TATTGTCAACACTAGATGTTTCATTGCATTTATTACAAAGCGTTATCACG
ATAAAGTGGTAAATGGAACTGAAACGGATAATTGTCGAGCAGAATTTGAT
TTTGCCAGTATAAGGGTCCCGATGATAGCTATAGTACTTGAATCTTCGAT
GAAAAATCCTCTCGAGTGGAAAGGAAATTTTGCATTAACTTTAGCACCCA
GGTTATACATCGACCTATCTGGTGATATCAACGATGATGGCTATTTGTCG
AACCAAATTAAACTCCtcaaaaaagatttagaaagcaAAGGAATATTTCC
CAATCAAAGCTTGGAAGTCGAATCCATGACAAACG
Run BLAST on NCBI

protein sequence of TCONS_00007416-protein

>TCONS_00007416-protein ID=TCONS_00007416-protein|Name=TCONS_00007416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MATASTNHDEKSDLFLSHDWGEDGKTNHEKVAKINQAIKNLGYRTWFDNE
RMVGNIREQMANGIVNTRCFIAFITKRYHDKVVNGTETDNCRAEFDFASI
RVPMIAIVLESSMKNPLEWKGNFALTLAPRLYIDLSGDINDDGYLSNQIK
LLKKDLESKGIFPNQSLEVESMTN
Run BLAST on NCBI

transcript from alignment at sc0000076:114002..114536

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007416 ID=TCONS_00007416|Name=TCONS_00007416|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at sc0000076:114002..114536 (Clytia hemisphaerica)
CGTTTGTCATGGATTCGACTTCCAAGCTTTGATTGGGAAATATTCCTTtg
ctttctaaatcttttttgaGGAGTTTAATTTGGTTCGACAAATAGCCATC
ATCGTTGATATCACCAGATAGGTCGATGTATAACCTGGGTGCTAAAGTTA
ATGCAAAATTTCCTTTCCACTCGAGAGGATTTTTCATCGAAGATTCAAGT
ACTATAGCTATCATCGGGACCCTTATACTGGCAAAATCAAATTCTGCTCG
ACAATTATCCGTTTCAGTTCCATTTACCACTTTATCGTGATAACGCTTTG
TAATAAATGCAATGAAACATCTAGTGTTGACAATACCGTTAGCCATTTGT
TCTCTGATATTGCCTACCATTCGCTCGTTATCAAACCACGTTCGATAGCC
AAGATTCTTGATGGCTTGATTGATTTTAGCGACTTTCTCATGGTTTGTTT
TTCCATCTTCGCCCCAGTCATGTGATAAAAACAAATCTGACTTTTCGTCA
TGGTTTGTACTAGCAGTAGCCATTTTTCAAATAGT

Coding sequence (CDS) from alignment at sc0000076:114002..114536

>TCONS_00007416 ID=TCONS_00007416|Name=TCONS_00007416|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0000076:114002..114536 (Clytia hemisphaerica)
GTTTGTCATGGATTCGACTTCCAAGCTTTGATTGGGAAATATTCCTTtgc
tttctaaatcttttttgaGGAGTTTAATTTGGTTCGACAAATAGCCATCA
TCGTTGATATCACCAGATAGGTCGATGTATAACCTGGGTGCTAAAGTTAA
TGCAAAATTTCCTTTCCACTCGAGAGGATTTTTCATCGAAGATTCAAGTA
CTATAGCTATCATCGGGACCCTTATACTGGCAAAATCAAATTCTGCTCGA
CAATTATCCGTTTCAGTTCCATTTACCACTTTATCGTGATAACGCTTTGT
AATAAATGCAATGAAACATCTAGTGTTGACAATACCGTTAGCCATTTGTT
CTCTGATATTGCCTACCATTCGCTCGTTATCAAACCACGTTCGATAGCCA
AGATTCTTGATGGCTTGATTGATTTTAGCGACTTTCTCATGGTTTGTTTT
TCCATCTTCGCCCCAGTCATGTGATAAAAACAAATCTGACTTTTCGTCAT
GGTTTGTACTAGCAGTAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004174XLOC_004174Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007416-proteinTCONS_00007416-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007416-exon-sc0000076-1491911889:114002..114536TCONS_00007416-exon-sc0000076-1491911889:114002..114536Clytia hemisphaericaexon
TCONS_00007416-exon-sc0000076-1510915933:114002..114536TCONS_00007416-exon-sc0000076-1510915933:114002..114536Clytia hemisphaericaexon
TCONS_00007416-exon-sc0000076-1575043694:114002..114536TCONS_00007416-exon-sc0000076-1575043694:114002..114536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:114002..114536 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326482	0	1.10898	0.843861	0.14676	0	0	0	0.366827	0.113594	0	0.144957	4.12553	2.85627	3.95493	5.70321	0.245089	0.753625	3.23921	4.96334	0.736544	0	0	0.226885	0	0	0.298448	0	0.12079	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000157TIR_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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