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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007432 ID=TCONS_00007432|Name=TCONS_00007432|organism=Clytia hemisphaerica|type=transcript|length=871bp
cgggtaccaattcaagaaaaacttcgatcaaagatgtcagatatagcttg
gtccagggatatataaaggtcagtgcatTTAACGTATCATTGAATTACAA
AGCATTTataaacgaattaaaaaataataactttccTCCCTTTCCGCACC
GCGCAAGCATAAGTTCATTCTGTTTGTCAGAGGAAAGGTGCGTcactttt
ctataaaaatttcTTCTCCACCGTTTTCCTTTTTTGCTTTCTCCTTCCCT
GTGGATTTTCAATCCCCTCCAAAATATCATGCACCGCTTGTGGCAAGTTT
ATATCCATCGggaatttttcttcaatcatttttaggcattctgtTAATAT
CTTTGAGTACCAGATATCTTCTTTTGAGGCGTCATCAATAATGGCGCGTA
AGACGTGTTTCCAGCTTCCGACACTAAATCTCTCAATCTTCAGATTCGAC
GGTAAAACGTCCTCCCTATAGTGGGTTAAGGAATTCTCGCGATACAGCCA
CTCATATTTCATGAGTATTTCTATATGTGGGTTCCTCTTGGCGAAATCTT
TAAGTTTGCCAAGACATAACCCAACACAGGGTGAATAATTACAATAAATA
TTGATACCTATGATATGATGCCCTGCATTTATCTTCGCTTGGATCCTGTT
TAAAACGTAAACTTCAGCGTGGCTTGGAGATGGATACTTCATCATGTTAT
TCTCAAGGTTCAGTTCGGAttcgtttctttttctttcccaAAATTTATAT
TGAGGTAGCTTGTACAGTTTGTACGACACCAAACATCGAGTGATTGCTGG
CCGAATCTCATTTCCTTGTTTGTCTTTATTCAAACCATCGAATGCTTTTA
GTTTCTCTAACGCAGTCATTC Run BLAST on NCBI protein sequence of TCONS_00007432-protein >TCONS_00007432-protein ID=TCONS_00007432-protein|Name=TCONS_00007432-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
MTALEKLKAFDGLNKDKQGNEIRPAITRCLVSYKLYKLPQYKFWERKRNE
SELNLENNMMKYPSPSHAEVYVLNRIQAKINAGHHIIGINIYCNYSPCVG
LCLGKLKDFAKRNPHIEILMKYEWLYRENSLTHYREDVLPSNLKIERFSV
GSWKHVLRAIIDDASKEDIWYSKILTECLKMIEEKFPMDINLPQAVHDIL
EGIENPQGRRKQKRKTVEKKFL Run BLAST on NCBI transcript from alignment at sc0000076:511843..512713 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007432 ID=TCONS_00007432|Name=TCONS_00007432|organism=Clytia hemisphaerica|type=transcript|length=871bp|location=Sequence derived from alignment at sc0000076:511843..512713 (Clytia hemisphaerica)
GAATGACTGCGTTAGAGAAACTAAAAGCATTCGATGGTTTGAATAAAGAC
AAACAAGGAAATGAGATTCGGCCAGCAATCACTCGATGTTTGGTGTCGTA
CAAACTGTACAAGCTACCTCAATATAAATTTtgggaaagaaaaagaaacg
aaTCCGAACTGAACCTTGAGAATAACATGATGAAGTATCCATCTCCAAGC
CACGCTGAAGTTTACGTTTTAAACAGGATCCAAGCGAAGATAAATGCAGG
GCATCATATCATAGGTATCAATATTTATTGTAATTATTCACCCTGTGTTG
GGTTATGTCTTGGCAAACTTAAAGATTTCGCCAAGAGGAACCCACATATA
GAAATACTCATGAAATATGAGTGGCTGTATCGCGAGAATTCCTTAACCCA
CTATAGGGAGGACGTTTTACCGTCGAATCTGAAGATTGAGAGATTTAGTG
TCGGAAGCTGGAAACACGTCTTACGCGCCATTATTGATGACGCCTCAAAA
GAAGATATCTGGTACTCAAAGATATTAacagaatgcctaaaaatgattga
agaaaaattccCGATGGATATAAACTTGCCACAAGCGGTGCATGATATTT
TGGAGGGGATTGAAAATCCACAGGGAAGGAGAAAGCAAAAAAGGAAAACG
GTGGAGAAgaaatttttatagaaaagtgACGCACCTTTCCTCTGACAAAC
AGAATGAACTTATGCTTGCGCGGTGCGGAAAGGGAggaaagttattattt
tttaattcgtttatAAATGCTTTGTAATTCAATGATACGTTAAatgcact
gacctttatatatccctggaccaagctatatctgacatctttgatcgaag
tttttcttgaattggtacccg Coding sequence (CDS) from alignment at sc0000076:511843..512713 >TCONS_00007432 ID=TCONS_00007432|Name=TCONS_00007432|organism=Clytia hemisphaerica|type=CDS|length=669bp|location=Sequence derived from alignment at sc0000076:511843..512713 (Clytia hemisphaerica)
ATGACTGCGTTAGAGAAACTAAAAGCATTCGATGGTTTGAATAAAGACAA
ACAAGGAAATGAGATTCGGCCAGCAATCACTCGATGTTTGGTGTCGTACA
AACTGTACAAGCTACCTCAATATAAATTTtgggaaagaaaaagaaacgaa
TCCGAACTGAACCTTGAGAATAACATGATGAAGTATCCATCTCCAAGCCA
CGCTGAAGTTTACGTTTTAAACAGGATCCAAGCGAAGATAAATGCAGGGC
ATCATATCATAGGTATCAATATTTATTGTAATTATTCACCCTGTGTTGGG
TTATGTCTTGGCAAACTTAAAGATTTCGCCAAGAGGAACCCACATATAGA
AATACTCATGAAATATGAGTGGCTGTATCGCGAGAATTCCTTAACCCACT
ATAGGGAGGACGTTTTACCGTCGAATCTGAAGATTGAGAGATTTAGTGTC
GGAAGCTGGAAACACGTCTTACGCGCCATTATTGATGACGCCTCAAAAGA
AGATATCTGGTACTCAAAGATATTAacagaatgcctaaaaatgattgaag
aaaaattccCGATGGATATAAACTTGCCACAAGCGGTGCATGATATTTTG
GAGGGGATTGAAAATCCACAGGGAAGGAGAAAGCAAAAAAGGAAAACGGT
GGAGAAgaaatttttatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007432-exon-sc0000076-1491911889:511843..512713 | TCONS_00007432-exon-sc0000076-1491911889:511843..512713 | Clytia hemisphaerica | exon |
| TCONS_00007432-exon-sc0000076-1510915933:511843..512713 | TCONS_00007432-exon-sc0000076-1510915933:511843..512713 | Clytia hemisphaerica | exon |
| TCONS_00007432-exon-sc0000076-1575043694:511843..512713 | TCONS_00007432-exon-sc0000076-1575043694:511843..512713 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000076 | supercontig | sc0000076:511843..512713 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines |
| GO:0008270 | zinc ion binding |
| GO:0016787 | hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016787 |
hydrolase activity |
| molecular_function |
GO:0016814 |
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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