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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007445 ID=TCONS_00007445|Name=TCONS_00007445|organism=Clytia hemisphaerica|type=transcript|length=3891bpRun BLAST on NCBI protein sequence of TCONS_00007445-protein >TCONS_00007445-protein ID=TCONS_00007445-protein|Name=TCONS_00007445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=994bp MFTSKVSFGLKTLVNFTRNPCLKSSTRNFHYKMDPNTDSKALRQSFIDFFRun BLAST on NCBI transcript from alignment at sc0000077:89256..112268+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007445 ID=TCONS_00007445|Name=TCONS_00007445|organism=Clytia hemisphaerica|type=transcript|length=23013bp|location=Sequence derived from alignment at sc0000077:89256..112268+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000077:89256..112268+ >TCONS_00007445 ID=TCONS_00007445|Name=TCONS_00007445|organism=Clytia hemisphaerica|type=CDS|length=2985bp|location=Sequence derived from alignment at sc0000077:89256..112268+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007445 vs. Swiss-Prot (Human)
Match: SYAC (Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2) HSP 1 Score: 1150.96 bits (2976), Expect = 0.000e+0 Identity = 572/969 (59.03%), Postives = 726/969 (74.92%), Query Frame = 1
Query: 358 MDPNTDSKALRQSFIDFFVKKYGHTFVPSSSTIPHDDPTLLFANAGMNQFKPLFLGTADPKSDLAKLKXAVNSQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGNWSFGDFFKKEAIPWAWEYLTDVCGLDGSRMYVTYFGGTD--DVPPDLESKQIWLDLGIPPERVLPFGMKDNFWEMGDTGPCGPCTEIHFDRIGGRDAAHLVNMDVPDVLEIWNLVFMEFNREHGGKLTPLPAKSVDTGMGLERIASVIQGKMSNYDTDIFMPYFDAIQKSSGIRAYTGHVGEEDTDGIDMAYRVLADHIRTLSIALADGGRPDNAGRGYVLRRILRRGIRYATEKLNCKPGFFASLVDIVCENLGEAFPNLLKDPDMIKEIINEEEVQFLKTLSRGRRLFNRAAEKATDNK-MSGEVAWRLYDTYGFPIDLTCLMAEERKMTVDMTGYETAKAHAQLIAKAKGSGQEDLCTLDVHAIDELKTKGFPATVEAPKYDYEKDGNNKYVFKSIQATVAALRINKQFVDQVTTGNRCGVLLDASCFYAEQGGQMYDLGYMNVEGDES---VEFAVRDVQVHGGYVLHLGNLEGNLKVGDKVVCSIDEQRRRTLMSNHTGTHVLNYALRKVLGEADQRGSLVAPDRLRFDFSCKSAMTTEQLENAENIVRGVINQKQPVYAKVSALVVAKNIQGLRAIFDEVYPDPVRVISIGNTLEELQADPQ--AGFNTSVEFCGGTHLRNTGDIEEFAIVSEEAISKGIRRIVAVSGHDAEKAHSKAAVLDGKLNDLKESINQKRNTNTLNLKEMSTLIARLTDDISECSIPQWXXXXXXXXXXXXXXXXXXADRAMKAGRMQRVVEQAVEIAKANQDKAFIVQQVEDGCNSKALDAALKQVKTNSPNLAAMFFSIDQDTKKVLCLCQVPKDVVDGKGLKANEWVKEVSTVIGGKGGGKPLSAQGSGENLQEINKAISLAKEFASLKL 3240
MD + +RQ FIDFF K+ HT+V SS+TIP DDPTLLFANAGMNQFKP+FL T DP +AKL A N+QKCIRAGGKHNDLDDVGKDVYHHTFFEMLG+WSFGD+FK+ A A E LT G+ R+YVTYFGG + + DLE KQIW +LG+ ++LP MKDNFWEMGDTGPCGPC+EIH+DRIGGRDAAHLVN D P+VLEIWNLVF+++NRE G L PLP KS+DTGMGLER+ SV+Q KMSNYDTD+F+PYF+AIQK +G R YTG VG ED DGIDMAYRVLADH RT+++ALADGGRPDN GRGYVLRRILRR +RYA EKLN GFFA+LVD+V ++LG+AFP L KDPDM+K+IINEEEVQFLKTLSRGRR+ +R + D+K + G+ AW LYDTYGFP+DLT L+AEE+ + VDM G+E + AQL ++ KG+G EDL LD++AI+EL+ +G T ++PKY+Y D + YVF++ ATV ALR K FV++V+TG CGV+LD +CFYAEQGGQ+YD GY+ D S EF V++ QV GGYVLH+G + G+LKVGD+V IDE RRR +MSNHT TH+LN+ALR VLGEADQ+GSLVAPDRLRFDF+ K AM+T+Q++ AE I +I + VY + L AK IQGLRA+FDE YPDPVRV+SIG + EL DP AG TSVEFCGGTHLRN+ F IV+EEAI+KGIRRIVAV+G +A+KA KA L L+ ++ + + N K++ IA L + ++ IPQW+K++LRE LK KK +DD DRA KA +RV+E+ + +N ++ ++ ++E G ++KAL+ ALK K +SP +AM F++D + K+ CLCQVP++ + +GLKA+EWV++VS ++ GKGGGK +SAQ +G+N+ + +A+ LA FA L+L
Sbjct: 1 MDSTLTASEIRQRFIDFF-KRNEHTYVHSSATIPLDDPTLLFANAGMNQFKPIFLNTIDPSHPMAKLSRAANTQKCIRAGGKHNDLDDVGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYFGGDEAAGLEADLECKQIWQNLGLDDTKILPGNMKDNFWEMGDTGPCGPCSEIHYDRIGGRDAAHLVNQDDPNVLEIWNLVFIQYNREADGILKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRRILRRAVRYAHEKLNASRGFFATLVDVVVQSLGDAFPELKKDPDMVKDIINEEEVQFLKTLSRGRRILDRKIQSLGDSKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMDGFEEERKLAQLKSQGKGAGGEDLIMLDIYAIEELRARGLEVTDDSPKYNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKVGDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALRKAESLKKCLSVMEAKVKAQTAPN----KDVQREIADLGEALATAVIPQWQKDELRETLKSLKKVMDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQVPQNAAN-RGLKASEWVQQVSGLMDGKGGGKDVSAQATGKNVGCLQEALQLATSFAQLRL 963 The following BLAST results are available for this feature:
BLAST of TCONS_00007445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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