TCONS_00007459 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007459
Unique Name	TCONS_00007459
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1304

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000077:313999..322074+
coding sequence from alignment at sc0000077:313999..322074+

transcript sequence

>TCONS_00007459 ID=TCONS_00007459|Name=TCONS_00007459|organism=Clytia hemisphaerica|type=transcript|length=1304bp
ACTGGATCAGCTTCAAGGTTTGGtggaacttttcctgaatttctTCTAAT
TATTACTTCATGGTAACTTCAGGGCAATTAGTTATGataatggaattttt
ttttacaatttgaaaataattttaggacaatttctttgtttttcagtCCC
AAATAAATACAAAGTATGGCCAAGATCGAGCCTCAAGCGTTCgaaaaaat
tagaaagaaaATCTACATAAAGGATACAGAAATTGCTGGCATGTATGATA
TGGAAGATACAATAGGTGCTGGTCACTTCGCTAAGGTTAAGCTTGCTAAA
CATGTTTTCACTGGATCCAAAGTTGCTGTCAAAATTATAGACAAAACAAA
ACTTGATGATGTTGCAAAAGCTCATTTACACAAGGAGGTTAATTGTATGA
AGCTTGTGCAACATCCCAATGTTGTAAAATTATACCATGTTATTGATACA
CAATCAAAACTGTACCTTATTCTCGAATATGGCGATGGTGGAGATTTGTA
TGATCACATTATGGCATATCAAAATAAGGACAAAGGAATGACTGAAGAAA
AAGCTagacatttttttaaacaaattgtTTCCGCGATTGATTACTGTCAT
AATTTACATGTAGTTCATCGTGATTTGAAGCCAGAGAATGtgattctttt
tgaaaaaggaacCGACGGCATTGGTTTGGCAAAACTCACAGACTTTGGct
tttccaatatttttgtaccagaaaaaaaattagatactTCTTGTGGCTCC
TTGGCATATTCCGCTCCTGAAATTTTGTTAGGTGACTCATATGATCCAAC
AGCTGTAGATATCTGGTCATTAGGCGTAATCCTGTATATGATGGTGTGTG
GTCGAGGCCCTTTCAATCACGCATCTGATTCAGAAACATTAACAAATATT
ATAGACTGCAAATATGATGTACCAGAAACTCTCTCGGAGGAATGCAAAAG
CTTGATTAAACTGATGCTAGTACCCAAACCAAAGAATCGGGCATCGGTCA
AGTCCATCCTGGAACACGAATGGTTTTTCAAAGGGTCTGCCATTTTGGAA
GAAGTCCCTCACATACCACTTATATCGAAAGTTGATCTCTCGGTTGACGT
ACATTTGGACATCCTACAAGCCATGCCAAAGGGATGGAGTAAAGAAGAAA
TCGAAAAttcTTTGAAAGATGACCAGTATGGCAATGTGACAGCTACATAT
TACCTGCTTGCAGAGTTGATCCTCAAAAACCGCCTTAACGCCTCCCATCA
AGCGCCACATGGACATGTGAAGATAGGACCAAGACATTCATCACCACTCG
AAAC

Run BLAST on NCBI

protein sequence of TCONS_00007459-protein

>TCONS_00007459-protein ID=TCONS_00007459-protein|Name=TCONS_00007459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=379bp
MAKIEPQAFEKIRKKIYIKDTEIAGMYDMEDTIGAGHFAKVKLAKHVFTG
SKVAVKIIDKTKLDDVAKAHLHKEVNCMKLVQHPNVVKLYHVIDTQSKLY
LILEYGDGGDLYDHIMAYQNKDKGMTEEKARHFFKQIVSAIDYCHNLHVV
HRDLKPENVILFEKGTDGIGLAKLTDFGFSNIFVPEKKLDTSCGSLAYSA
PEILLGDSYDPTAVDIWSLGVILYMMVCGRGPFNHASDSETLTNIIDCKY
DVPETLSEECKSLIKLMLVPKPKNRASVKSILEHEWFFKGSAILEEVPHI
PLISKVDLSVDVHLDILQAMPKGWSKEEIENSLKDDQYGNVTATYYLLAE
LILKNRLNASHQAPHGHVKIGPRHSSPLE

Run BLAST on NCBI

transcript from alignment at sc0000077:313999..322074+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007459 ID=TCONS_00007459|Name=TCONS_00007459|organism=Clytia hemisphaerica|type=transcript|length=8076bp|location=Sequence derived from alignment at sc0000077:313999..322074+ (Clytia hemisphaerica)
ACTGGATCAGCTTCAAGGTTTGGtggaacttttcctgaatttctTCTAAT
TATTACTTCATGGTAACTTCAGGGCAATTAGTTATGataatggaattttt
ttttacaatttgaaaataattttaggacaatttctttgtttttcagtCCC
AAATAAATACAAAGTATGGCCAAGATCGAGCCTCAAGCGTTCgaaaaaat
tagaaagaaaATCTACATAAAGGATACAGAAATTGCTGGCATGTATGATA
TGGAAGATACAATAGGTGCTGGTCACTTCGCTAAGGTTAAGCTTGCTAAA
CATGTTTTCACTGGATCCAAAGTTGCTGTCAAAATTATAGACAAAACAAA
ACTTGATGATGTTGCAAAAGCTCATTTACACAAGGAGGTTAATTGTATGA
AGCTTGTGCAACATCCCAATGTTGTAAAATTATACCATGTTATTGATACA
CAATCAAAACTGTACCTTATTCTCGAATATGGCGATGGTGGAGATTTGTA
TGATCACATTATGGCATATCAAAATAAGGACAAAGGAATGACTGAAGAAA
AAGCTagacatttttttaaacaaattgtTTCCGCGATTGATTACTGTCAT
AATTTACATGTAGTTCATCGTGATTTGAAGCCAGAGAATGtgattctttt
tgaaaaaggaacCGACGGCATTGGTTTGGCAAAACTCACAGACTTTGGct
tttccaatatttttgtaccagaaaaaaaattagatactTCTTGTGGCTCC
TTGGCATATTCCGCTCCTGAAATTTTGTTAGGTGACTCATATGATCCAAC
AGCTGTAGGTAAGCCCAAACAAAATAACTGATAATTCCATAGTAGTTTTA
ACATTTAATCCAAACTGGGTTTCAGTTTCTACACAGTATATTGATTTTAG
TGCAGAAAAAAGTGATAGATAGTTCAGACACATACTTTATGAATtcatta
ttgtttttattacactcttttttatttgaggaCAGTGAGGCTCAAATGGT
GAAAAATAGAAACAATATAAAACaaacaggctagctctaaaagagcatct
acaatcatggttgaaatatgaGAATTTCagttatttcaacgtttttcaag
atttaaagtttgggcgagaaagtcgattttgggctctctttaatttaatc
gattatttcaatttgggaggggttggcagacttccaggctatattctgag
ccttattggactatttttgaacttttggatcctcagatcctaaggtctta
agtctagctttaaaactcagagttaaaatctAAGAATATAAGAAGAATCA
AGCCTCAACAAAAAttcactggttcttataaaaaaagtataaatttatTT
GGTAATGAAAAAGCAGGTCGAAGTCTAACTGTTTGTTACCTTCATTTTGC
TTGTCAGGATTCAGCTATTCTaagcttgttcttattttttgtattcCTGA
GCCTAGCATTGTTcttgcaaaaaagaaaaaaaatataataggaATTTTCA
TTCCTTTTTGTGGGTTTCTTCACCATTTATGCCAAGCACCCAGTAATTat
tggaaaattttatataagtacttttcatgaaaaaatgtagtagtccggcg
gcgaaaagggcttttttgcaacaacccttacaagtagtaaatatgAGTTT
TTATcctattttctcattatataATCCCTCGGGAccccaaaaccggtttt
taaaacgtttttagcgtttttcaacgtttttggcccttttctgctgagtc
agcaaaatttcaaactctaatatctcatgatctagcctaggaaaccctat
aaatgacccctctaatcgatagtactcttcgagacaCATCTGTTAAAACT
GGTATCTTTTGctgaaaatgttctcaaaaatgctgacgttggcacaaaat
attgcatttttgaagacgtatcggcCAATTCTGTGGGGCTAAGTCCacta
aatgagacaaatgaccccactttggagatctactcttcaagctctatctg
atggcacaatcagttttagctaaataagaacttcaaaaatcgactttcta
aggacccccaggctaaaatgaccctaNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaggc
taaaatgaccctacccccttcaagcccccataaaaaattttccccagctt
tgccagcttggcaaaaactggttttggggtcccaagggaccatatgatag
gaaaataaaataaaaacccatatttactaatagtaagggtgatcctggat
cgccgccggactaTAGGCAAGTTGGGTGAAATGCCAGCTTTTGCTCactt
ttttgtacatttttaacCAGCTTACATCCAATAATTACATAACCTGAATT
GGAGacatttcattgaaaaattgccaaaattagATTTTTACAATGAAAAC
AATTATTAATTTGAGCATCTTTTAATTTGTTTCACAGtataatgtttgaa
aattgGCTGGCCTTAATTGAAAAAGTCCAGCATAAATTTTGATAACTCCA
CGTTTCAATGGATGCAAAGGAAACTTTGGTTATTGTTGTTTCCCTTGAAT
CCATTAAAACATGGAGTtatttagcctggatatccagaccgtaaactact
tcaccgtctagtttttttaagATCATGTTTCTGGTTCAcagtctggtcca
actaactcctctgcagggatatctgtccctgcacaTGCGAGTGTATCTAA
Ttagtcagtacgcgcccagtcactgagcagaattttctatatttttcaat
ttgcgcgcataatttatggaaaaaactgacattgcaaaaaaagataaaca
aatgaaaatgaaaacacaggttatttctaaataaaatggctgatggaaac
tcctttatgaatgtggctgacgtttgaatgtagtttaaagtagttttgaa
aggcttttgagtttgtataaaagaggttttatggtaagtaattatgtgtg
tctgcctggatttccaaagttttgagattctgtcaacaagggtttactCC
CAGACTGTGCCATTCAAACTGTACCATACTGTTTTATTTGCACcggactc
taaaattttagaaactttgtatgttgaggtaagagtttttgttctgaaat
tttgagtctggatacccaggctaggagttatttgtggtttatgctagagt
ttttaattatccAAAATGACATCGCACCTAGCAAAAGGTCTTTTAAAGTA
CAACTTCTTTTATGTTGGGCAGAATCAATTTAGAAATGATTGGATTTCAC
CATGAAACCAGATTTTTACATGatacaaaacatttttaagGGCTTTAGAA
GATACCGATTTCCTCATTTTTCCTGAGAATTTCAGTTCCTTATTTACTTA
GCTGCTAAGTTAGGATTTGCAGATTATAGGACTTCTGTTATTGAATGTCG
TTTCAGCAACATTTTATCATCTTTTTGCTTAGGATATTGTAAAAGTGTGC
AAGTTCAAGTTTaactcttactgttccttaaattGATTTCTTATATTCTG
AGCCTCAACAGTTCCTtgacaattccttattttatggaccattttcagcc
ttaaagttccttataaacgtgttccttataaaaaagtgttaaGTACCAAG
TTATAGTGGTTCTAGCAAGTTGTAGTAGAGAATCTTATCGCATAAAACTT
CAACAATTAATTAAGTAAGCAGATGATAATAataagaaagttaaaatttc
CCTGAAAGGGTCCAAAACTTAATTTTTCACAGTATCACCAAAAAATATGT
CCCACTTGGTAGTCTTTTGAAGAATTTGAGATATTCAGTATTGCAGTGTT
TCCTCTTTGAAATTTTGGGTGTGAAGTCATCAGTGCAACTAAAAACTTGA
TGAGGTGTGACATATCATGTAGAGTGCAATCAGGGTTTTCGCTTCCCAGA
TTTCTAACGGGGAgttgaaatttagcaatttGATGGGGTTACCAAATTCG
TTGGGGGTGACTGTAGGTGATCTGATAGAGACTTTGGGCATTGTTTCATT
GTTTcccagttttttttcaaattgaatactTCCAACAGTTCCTCATCCCA
ATTTTCAACTTTGTTCAAATCTATTATGTACTGACAAGAGAGTAGAAAGT
GTCAATTAAAAAAGATTCCTGATTAACCAGGCCGCCTGTACTTGAGGCAA
ATTTTAAGGGTACCTAAATCATTGGGGTGCTATGCTTGTTGGGGGTACCT
GAAAAGTAAGATAAAGCAAAGGCAATGTACAATggcgttgtggtatagtg
gacatcaaccttgattcctgtacaggcgaccaaggttcgattcccactca
caacggttcacttggcaagtgaacaaaccttcgcccgggtcaacccatgc
catgtgaggggaattgggtagtcagttcaaggtgctgacggaatgcttac
tcaaagcatctatagttgcgagaatgggctcccagagcctcctgtaactc
aaccataatagaaatagaaatagaagtttaaagtttaaagtccaAACTTA
GTGTATAATTCATCACACTTCCAATATTATCAAAAGATCTGTCTTCATCT
AATACAAAGTTTACTATTATTTCTTTTCACAGATATCTGGTCATTAGGCG
TAATCCTGTATATGATGGTGTGTGGTCGAGGCCCTTTCAATCACGCATCT
GATTCAGAAACATTAACAAATATTATAGACTGCAAATATGATGTACCAGA
AACTCTCTCGGAGGAATGCAAAAGGTATTTCTATATTATATTACGTAATC
GtcgtgtttgtttttgttgagtGACTCTTTACACAAATGGTATTTCTACA
GTGATTTATTTCACAATATTTGAAAATCCTAATATAAGATACCAGGGTGC
TTTGCTGTGCTGAAACAAGGATGGTGTAGTGTTGTATGCTACAGTTTGGT
CTCTTTAACTCggacctctataactcgaatgtctccttccttaactcgaa
caagtttgtttgttccttcagttaacaatgccttactCCATATCTCGAAA
TTTCCTCAGCTCAGGACagcttaactcgaacaaatttgtccCCTGTGCGA
TTTTGAGTTATAGAGAGAGAGACTCTACTCTATTTGAGTCTTTTAAACAT
ATTATgatttttgctttctttataattaccgtattacttcgaataaacgc
cccctcaaataaacgcccctcctaaaacaaaaattatttaataaacgccc
ccctcaaataaacgccccctcaaataaacgcccccttcgaataaacgccc
cctatAGGGGAGGGGcggggtgtttattcgaagtaatacggtatgttCAT
GTTGGTGCACTGTGTGAAAATATTAGGTGAACCTTTCAttacaaagtaaa
taacaaAACTTTAATTTGATATGGTATCATGTTCGTGAGAATTCGACTCT
ACATATTCACTCGAAGTCAACCTCTGAAGgttcaattttagaaaatttcg
aATCAAGGCAGTTCTTTGTATTTAAAAGTTGTAGTATGGAGGTCAGATAA
CTAAGGggtgtttcttaaaattttaacatGTAATTTTGCTATGGACCGAT
TCcgagtgacgtcattttcactgACGATCAACCATTTCTCTGAGAATTCA
CAGGAAGAATATGTACTGGGTGATTTAGTTCAAACCTTACTTAGCTGAAA
ACTGAATACTTCCCGTTGGACGTGGGCATTGTTTTTGTTTCGTAGAATGA
AATTCATTTCAGTTAGGAACAGATAGTGGATAGTTGTTCCTACATAACTG
GATTTCGCCGAATCCATCTAATTAAAACGATCAATTTTGGTAAAAAGATA
ATCAGAGAAGATTAAATGAAGCAAGCATTTTAATAACGCGTTTTCTCTCT
TTCAACACAGCTTGATTAAACTGATGCTAGTACCCAAACCAAAGAATCGG
GCATCGGTCAAGTCCATCCTGGAACACGAATGGTTTTTCAAAGGGTCTGC
CATTTTGGAAGAAGTCCCTCACATACCACTTATATCGAAAGTTGATCTCT
CGGTTGACGTACATTTGGACATCCTACAAGCCATGCCAAAGGGATGGAGT
AAAGAAGAAATCGAAAAGTAAGAAATTTGTTCTGTTCGCATTATAcatac
atttttatcattaaaaaaaacaaagttacgAGGCCCATATAATCTATAAT
ACCATTTTTCGCACTCTATGAAAGCAATTTCATAGGAATGCTCACAAAAT
GCTGAAAGCTGATTGGTATATATGCGGCATGTGTAAAAAGAAATGGGATT
TTGAATCCATCAGTGCTTTGTCCGCGGAGTTTTATGACAATTTGTCTTGA
ATTTTCTCCTCATAAACCTGTTTAAACATGAGATTTTTCTAGCTCATCGG
TAGAAAATTACttggcaaaaaaattgtccgttgtcaaatattcgtcactt
gcaaataaattcgtcactttttgcCGATGAATATTTTAACGggaaaatat
ttgaattgagAGCAAATAAGGCTggaaaatattacaaaatactgaacaaa
atacttttttcagAATGTTTGGTCGTAAATAAGACATAGATCCGAAGCTT
AGCTCCCAAGCACTCAAAAGAAACGTATTCAAAGTATTCAAAAATCGTTT
AGTAAAAAAATCGtcacaaatgaaattttttgtcacaagtactttaggcg
tataaactttcgcgaacagaGACTTTctcgaggtcgaaaaatcgtcATTT
ACTTTCGTGAAAAGTCTAGAaaattcgtgaaagtttgtCACAAGTATCTT
TTATTTCGAAATAAATCTTTGGAATGAGCTTGACAGAAAGATTTTCCAAT
CTCATTCTAACGACATCTTTTTTTCCGGATTACAGCTAgtctttttctta
attttttcgaAATGTGGGACACAACTTTCATGCCTTAATACTTCTAATGT
TGAAATATCAGTTACTTTTTCGAACTTTTCGTTACGTAATAATTATAGTT
CTTTGTAGAACTATCATGAATAATGTATCCCACCTTCAAAAACGCTCTTG
AAGTTTTATGCAAGATTTAACGGAGAGAAAAACCTTCGTTTTTCCGTTTT
ATCCTTTTCAtggagaaaagaagaaaaaaagcttCCAAACTTTCCTCATT
TTTAAGTAGTGGGTTCCTTCGTTTCAGGTTCATTGTATAAAAAGCTAAAT
CTTGAAATGTTTCGCTTGTGGGTTTTTATTcctgaccaaaatttcaattg
gGTGAGAAAGTTCATCCTACGTTTCATACTATTCATAATAATCatataac
aaaaaaactttttaacggAGAAACACCGGAatgaaaaacaacacaaaagg
TCTCAAGAAATCGGTTTTCCTATCCAATgaatttgtctttttctttttat
gttcGATAACTGAAAATTTTTCCTTGCGCTAAATATCCGATTTCATGACA
ACGAGATGGCTCTACCAACAAAGATTGACAATGTTTTGCCCAAGGGAAAG
TCGCAAGTTCCTTTCGTCCGTCCGGGTATCGATATCGATCGGGTTTAAAA
ACCGTCAAAATACCCGAGTTTGAGTTGCAGAAAAACTGTTCTAAATACCT
agcagaaactttttttgcaattttttttctaggaTCAAACTCGACTCCAA
AGGTCCCTTCTGGTccttttaaaaaaaggtttcaaataCAGTTTTATTGC
TGTAAGATAAGCCTCATACCAGCCTGTACCAGACTCTTCTTCGCTGGCTG
AAAAGATAACCTACggcaagtttttttttcaaaatataaaaagcacCCGT
GGCGGCGGGGTGGTACAGGCTAGCTTTATACAAGCAGATCATGTTTTCAT
GGaagcatcattaattttttcttcttcagttcTTTGAAAGATGACCAGTA
TGGCAATGTGACAGCTACATATTACCTGCTTGCAGAGTTGATCCTCAAAA
ACCGCCTTAACGCCTCCCATCAAGCGCCACATGGACATGTGAAGATAGGA
CCAAGACATTCATCACCACTCGAAAC

Coding sequence (CDS) from alignment at sc0000077:313999..322074+

>TCONS_00007459 ID=TCONS_00007459|Name=TCONS_00007459|organism=Clytia hemisphaerica|type=CDS|length=4548bp|location=Sequence derived from alignment at sc0000077:313999..322074+ (Clytia hemisphaerica)
ATGGCCAAGATCGAGCCTCAAGCGTTCgaaaaaattagaaagaaaATCTA
CATAAAGGATACAGAAATTGCTGGCATGTATGATATGGAAGATACAATAG
GTGCTGGTCACTTCGCTAAGGTTAAGCTTGCTAAACATGTTTTCACTGGA
TCCAAAGTTGCTGTCAAAATTATAGACAAAACAAAACTTGATGATGTTGC
AAAAGCTCATTTACACAAGGAGGTTAATTGTATGAAGCTTGTGCAACATC
CCAATGTTGTAAAATTATACCATGTTATTGATACACAATCAAAACTGTAC
CTTATTCTCGAATATGGCGATGGTGGAGATTTGTATGATCACATTATGGC
ATATCAAAATAAGGACAAAGGAATGACTGAAGAAAAAGCTagacattttt
ttaaacaaattgtTTCCGCGATTGATTACTGTCATAATTTACATGTAGTT
CATCGTGATTTGAAGCCAGAGAATGtgattctttttgaaaaaggaacCGA
CGGCATTGGTTTGGCAAAACTCACAGACTTTGGcttttccaatatttttg
taccagaaaaaaaattagatactTCTTGTGGCTCCTTGGCATATTCCGCT
CCTGAAATTTTGTTAGGTGACTCATATGATCCAACAGCTGTAGATATCTG
GTCATTAGGCGTAATCCTGTATATGATGGTGTGTGGTCGAGGCCCTTTCA
ATCACGCATCTGATTCAGAAACATTAACAAATATTATAGACTGCAAATAT
GATGTACCAGAAACTCTCTCGGAGGAATGCAAAAGCTTGATTAAACTGAT
GCTAGTACCCAAACCAAAGAATCGGGCATCGGTCAAGTCCATCCTGGAAC
ACGAATGGTTTTTCAAAGGGTCTGCCATTTTGGAAGAAGTCCCTCACATA
CCACTTATATCGAAAGTTGATCTCTCGGTTGACGTACATTTGGACATCCT
ACAAGCCATGCCAAAGGGATGGAGTAAAGAAGAAATCGAAAAttcTTTGA
AAGATGACCAGTATGGCAATGTGACAGCTACATATTACCTGCTTGCAGAG
TTGATCCTCAAAAACCGCCTTAACGCCTCCCATCAAGCGCCACATGGACA
TGTGAAGATAGGACCAAGACATTCATCACCACTCGAAATGGCCAAGATCG
AGCCTCAAGCGTTCgaaaaaattagaaagaaaATCTACATAAAGGATACA
GAAATTGCTGGCATGTATGATATGGAAGATACAATAGGTGCTGGTCACTT
CGCTAAGGTTAAGCTTGCTAAACATGTTTTCACTGGATCCAAAGTTGCTG
TCAAAATTATAGACAAAACAAAACTTGATGATGTTGCAAAAGCTCATTTA
CACAAGGAGGTTAATTGTATGAAGCTTGTGCAACATCCCAATGTTGTAAA
ATTATACCATGTTATTGATACACAATCAAAACTGTACCTTATTCTCGAAT
ATGGCGATGGTGGAGATTTGTATGATCACATTATGGCATATCAAAATAAG
GACAAAGGAATGACTGAAGAAAAAGCTagacatttttttaaacaaattgt
TTCCGCGATTGATTACTGTCATAATTTACATGTAGTTCATCGTGATTTGA
AGCCAGAGAATGtgattctttttgaaaaaggaacCGACGGCATTGGTTTG
GCAAAACTCACAGACTTTGGcttttccaatatttttgtaccagaaaaaaa
attagatactTCTTGTGGCTCCTTGGCATATTCCGCTCCTGAAATTTTGT
TAGGTGACTCATATGATCCAACAGCTGTAGATATCTGGTCATTAGGCGTA
ATCCTGTATATGATGGTGTGTGGTCGAGGCCCTTTCAATCACGCATCTGA
TTCAGAAACATTAACAAATATTATAGACTGCAAATATGATGTACCAGAAA
CTCTCTCGGAGGAATGCAAAAGCTTGATTAAACTGATGCTAGTACCCAAA
CCAAAGAATCGGGCATCGGTCAAGTCCATCCTGGAACACGAATGGTTTTT
CAAAGGGTCTGCCATTTTGGAAGAAGTCCCTCACATACCACTTATATCGA
AAGTTGATCTCTCGGTTGACGTACATTTGGACATCCTACAAGCCATGCCA
AAGGGATGGAGTAAAGAAGAAATCGAAAAttcTTTGAAAGATGACCAGTA
TGGCAATGTGACAGCTACATATTACCTGCTTGCAGAGTTGATCCTCAAAA
ACCGCCTTAACGCCTCCCATCAAGCGCCACATGGACATGTGAAGATAGGA
CCAAGACATTCATCACCACTCGAAATGGCCAAGATCGAGCCTCAAGCGTT
CgaaaaaattagaaagaaaATCTACATAAAGGATACAGAAATTGCTGGCA
TGTATGATATGGAAGATACAATAGGTGCTGGTCACTTCGCTAAGGTTAAG
CTTGCTAAACATGTTTTCACTGGATCCAAAGTTGCTGTCAAAATTATAGA
CAAAACAAAACTTGATGATGTTGCAAAAGCTCATTTACACAAGGAGGTTA
ATTGTATGAAGCTTGTGCAACATCCCAATGTTGTAAAATTATACCATGTT
ATTGATACACAATCAAAACTGTACCTTATTCTCGAATATGGCGATGGTGG
AGATTTGTATGATCACATTATGGCATATCAAAATAAGGACAAAGGAATGA
CTGAAGAAAAAGCTagacatttttttaaacaaattgtTTCCGCGATTGAT
TACTGTCATAATTTACATGTAGTTCATCGTGATTTGAAGCCAGAGAATGt
gattctttttgaaaaaggaacCGACGGCATTGGTTTGGCAAAACTCACAG
ACTTTGGcttttccaatatttttgtaccagaaaaaaaattagatactTCT
TGTGGCTCCTTGGCATATTCCGCTCCTGAAATTTTGTTAGGTGACTCATA
TGATCCAACAGCTGTAGATATCTGGTCATTAGGCGTAATCCTGTATATGA
TGGTGTGTGGTCGAGGCCCTTTCAATCACGCATCTGATTCAGAAACATTA
ACAAATATTATAGACTGCAAATATGATGTACCAGAAACTCTCTCGGAGGA
ATGCAAAAGCTTGATTAAACTGATGCTAGTACCCAAACCAAAGAATCGGG
CATCGGTCAAGTCCATCCTGGAACACGAATGGTTTTTCAAAGGGTCTGCC
ATTTTGGAAGAAGTCCCTCACATACCACTTATATCGAAAGTTGATCTCTC
GGTTGACGTACATTTGGACATCCTACAAGCCATGCCAAAGGGATGGAGTA
AAGAAGAAATCGAAAAttcTTTGAAAGATGACCAGTATGGCAATGTGACA
GCTACATATTACCTGCTTGCAGAGTTGATCCTCAAAAACCGCCTTAACGC
CTCCCATCAAGCGCCACATGGACATGTGAAGATAGGACCAAGACATTCAT
CACCACTCGAAATGGCCAAGATCGAGCCTCAAGCGTTCgaaaaaattaga
aagaaaATCTACATAAAGGATACAGAAATTGCTGGCATGTATGATATGGA
AGATACAATAGGTGCTGGTCACTTCGCTAAGGTTAAGCTTGCTAAACATG
TTTTCACTGGATCCAAAGTTGCTGTCAAAATTATAGACAAAACAAAACTT
GATGATGTTGCAAAAGCTCATTTACACAAGGAGGTTAATTGTATGAAGCT
TGTGCAACATCCCAATGTTGTAAAATTATACCATGTTATTGATACACAAT
CAAAACTGTACCTTATTCTCGAATATGGCGATGGTGGAGATTTGTATGAT
CACATTATGGCATATCAAAATAAGGACAAAGGAATGACTGAAGAAAAAGC
TagacatttttttaaacaaattgtTTCCGCGATTGATTACTGTCATAATT
TACATGTAGTTCATCGTGATTTGAAGCCAGAGAATGtgattctttttgaa
aaaggaacCGACGGCATTGGTTTGGCAAAACTCACAGACTTTGGcttttc
caatatttttgtaccagaaaaaaaattagatactTCTTGTGGCTCCTTGG
CATATTCCGCTCCTGAAATTTTGTTAGGTGACTCATATGATCCAACAGCT
GTAGATATCTGGTCATTAGGCGTAATCCTGTATATGATGGTGTGTGGTCG
AGGCCCTTTCAATCACGCATCTGATTCAGAAACATTAACAAATATTATAG
ACTGCAAATATGATGTACCAGAAACTCTCTCGGAGGAATGCAAAAGCTTG
ATTAAACTGATGCTAGTACCCAAACCAAAGAATCGGGCATCGGTCAAGTC
CATCCTGGAACACGAATGGTTTTTCAAAGGGTCTGCCATTTTGGAAGAAG
TCCCTCACATACCACTTATATCGAAAGTTGATCTCTCGGTTGACGTACAT
TTGGACATCCTACAAGCCATGCCAAAGGGATGGAGTAAAGAAGAAATCGA
AAAttcTTTGAAAGATGACCAGTATGGCAATGTGACAGCTACATATTACC
TGCTTGCAGAGTTGATCCTCAAAAACCGCCTTAACGCCTCCCATCAAGCG
CCACATGGACATGTGAAGATAGGACCAAGACATTCATCACCACTCGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004209	XLOC_004209	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007459-exon-sc0000077-1491911889:313999..314806	TCONS_00007459-exon-sc0000077-1491911889:313999..314806	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1510915933:313999..314806	TCONS_00007459-exon-sc0000077-1510915933:313999..314806	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1575043694:313999..314806	TCONS_00007459-exon-sc0000077-1575043694:313999..314806	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1491911889:318681..318822	TCONS_00007459-exon-sc0000077-1491911889:318681..318822	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1510915933:318681..318822	TCONS_00007459-exon-sc0000077-1510915933:318681..318822	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1575043694:318681..318822	TCONS_00007459-exon-sc0000077-1575043694:318681..318822	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1491911889:319959..320165	TCONS_00007459-exon-sc0000077-1491911889:319959..320165	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1510915933:319959..320165	TCONS_00007459-exon-sc0000077-1510915933:319959..320165	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1575043694:319959..320165	TCONS_00007459-exon-sc0000077-1575043694:319959..320165	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1491911889:321928..322074	TCONS_00007459-exon-sc0000077-1491911889:321928..322074	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1510915933:321928..322074	TCONS_00007459-exon-sc0000077-1510915933:321928..322074	Clytia hemisphaerica	exon
TCONS_00007459-exon-sc0000077-1575043694:321928..322074	TCONS_00007459-exon-sc0000077-1575043694:321928..322074	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00007459-protein	TCONS_00007459-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000077	supercontig	sc0000077:313999..322074 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.03075	6.7929	6.19971	4.91696	26.6527	19.1623	19.2446	20.4734	11.003	11.566	10.9308	10.0338	10.7094	9.44346	6.53117	8.58842	10.8235	11.9912	8.74818	12.398	14.2846	17.1897	6.27817	9.05137	17.9149	18.938	9.41842	10.7154	6.32917	6.99801

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR008271	Ser/Thr_kinase_AS
IPR017441	Protein_kinase_ATP_BS
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Blast

[Close]

BLAST of TCONS_00007459 vs. Swiss-Prot (Human)
Match: SNRK (SNF-related serine/threonine-protein kinase OS=Homo sapiens GN=SNRK PE=1 SV=2)

HSP 1 Score: 407.912 bits (1047), Expect = 3.248e-134
Identity = 209/363 (57.58%), Postives = 260/363 (71.63%), Query Frame = 1

Query:  223 DTEIAGMYDMEDTIGAGHFAKVKLAKHVFTGSKVAVKIIDKTKLDDVAKAHLHKEVNCMKLVQHPNVVKLYHVIDTQSKLYLILEYGDGGDLYDHIMAYQNKDKGMTEEKARHFFKQIVSAIDYCHNLHVVHRDLKPENVILFEKGTDGIGLAKLTDFGFSNIFVPEKKLDTSCGSLAYSAPEILLGDSYDPTAVDIWSLGVILYMMVCGRGPFNHASDSETLTNIIDCKYDVPETLSEECKSLIKLMLVPKPKNRASVKSILEHEWFFKGSAILEEVPHIPLISKVDLSVDVHLDILQAMPKG--WSKEEIENSLKDDQYGNVTATYYLLAELILKNRLN---ASHQAPHGHVKIGPRHSSP 1296
            D +IAG+YD++ T+G GHFA VKLA+HVFTG KVAVK+IDKTKLD +A  HL +EV CMKLVQHPN+V+LY VIDTQ+KLYLILE GDGGD++D+IM ++   +G+ E+ A+ +F QIV AI YCH LHVVHRDLKPENV+ FEK     GL KLTDFGFSN F P KKL TSCGSLAYSAPEILLGD YD  AVDIWSLGVIL+M+VCG+ PF  A+DSETLT I+DCKY VP  +S+ECK LI  ML   PK RAS++ I  H W            +IPL+S  +LS + H  I+Q M  G    ++ I  +L+ ++Y ++TATY+LLAE IL+ +      +  A   ++K   R S P
Sbjct:    9 DGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLATGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDMFDYIMKHE---EGLNEDLAKKYFAQIVHAISYCHKLHVVHRDLKPENVVFFEKQ----GLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDEYDAPAVDIWSLGVILFMLVCGQPPFQEANDSETLTMIMDCKYTVPSHVSKECKDLITRMLQRDPKRRASLEEIENHPWLQGVDPSPATKYNIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVEALETNRYNHITATYFLLAERILREKQEKEIQTRSASPSNIKAQFRQSWP 364

The following BLAST results are available for this feature:

BLAST of TCONS_00007459 vs. Swiss-Prot (Human)

BLAST of TCONS_00007459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SNRK	3.248e-134	57.58	SNF-related serine/threonine-protein kinase OS=Hom...	[more]

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TCONS_00007459 (transcript) - C. hemisphaerica