TCONS_00007543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007543
Unique NameTCONS_00007543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007543 ID=TCONS_00007543|Name=TCONS_00007543|organism=Clytia hemisphaerica|type=transcript|length=1391bp
AACATCATCAAAAGTGTATAATTCCAAATCGACCAAGCAAAGAACGCAGA
AGTTCAGGATTTTTGCAAAGATTCAGAAAAGcatGTGAGAGGTTCGACGA
ACGAAGGCAGATAAAAGGTGTGCGAAGCTCTGGAATTTtacgcagaaaaa
aaaaacagcatcGGGAAAGTTCTGAAgggaaaatgaagattgaagaTTTA
TGTGTCAATGATTATCTTTACCTCGATGTCAGATGAAAACTGAGATCGTA
TTGAGACGCGGAACGAAGACAGAAGATGGCTCTTGATTTCGGCGCCGGTT
GCCTAGGAGGGGCTGCCGGTGTGGTAGTAGGACAACCTTTTGACACAGTA
AAAgTTCGTTTACAAGTACCTAAAGCTTCGTACCGTGgcgtgtttcattg
tttcaccACCATGGTCAAAGAAGAAAGCATATTCAGTTTATACAAGGGAA
TGACACCCCCACTACTCGGAGTGGCTTTTCAAAATGCTATTTTATTTGGA
TTGCAAGGATATTTCCGACGTTTCGTTGATGACAGTGTGTCCGGTGAAAT
GATCGCCGGAGCACTAACGGGAGCGTCGCAAGCTATTGTTACAGCGCCTA
TCGAACATGCTAAAATTAAACTACAAATTCAAGGCACAGGATGTCCCACA
CAGAACACACGGAGATATAAAGGACCTATTCAAACGATTTTACAAATCAG
ACGTGAGAGTGGTACTAAAAGTTGTTTTCGTGGACTTCTTGGTGTTGTGT
TGAGAGATATGCCAGGAACGGCTATTTACTTcggatctttttcttttttg
aaccaatttttcatccccgAAGGTGGCGATATAAATTCTTTACGGCCCGC
CACGTTACTTTTTACAGGAGGACTTGCAGGCATGCTTTCATGGGCGGCTT
TTTATCCGATAGATGTGATCAAAACACGTATACAAGCGGAAGGATTGCAA
CCGCACGGGCGGTATGCTTCATATACGGACTGCGCTGTTGTCAGTTTTAA
AGAGGAAGGGTATACATGGATGACAAGAGGTTTTGGTGCAACCATGTTAC
GAGCTTTCCCTGTAAATGCGGCTATTTTCGCTACCGTAACTTTGATCTAT
CGATATATGAGATCACAATCGAGTGATGAATATGATGATTGATTGgtgat
ttgtgtttttttctatgttttttttttggctttcaatgtatcaaattatt
ttgttatatttCTGGTTAGACTAAGGCTTAGTGCGATTGttggtattttt
tttactttttttttctctgataaaaacgaaatttATTACATACTTCATTA
CGGCATTTTTTGATACCTTTTGTAACTTTTATACATTATCATTAATTTTA
TATccgatttatttttttgcaatacAATGATACAATTTTCC
Run BLAST on NCBI

transcript from alignment at sc0000078:32129..40149+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007543 ID=TCONS_00007543|Name=TCONS_00007543|organism=Clytia hemisphaerica|type=transcript|length=8021bp|location=Sequence derived from alignment at sc0000078:32129..40149+ (Clytia hemisphaerica)
AACATCATCAAAAGTGTATAATTCCAAATCGACCAAGCAAAGAACGCAGA
AGTTCAGGATTTTTGCAAAGATTCAGAAAAGGTAATTCCATAAATTTCTA
CTTTCTCTTTGAAAATTGTGCAGTTGGATTTATATTAATGGGTCAATGTC
CTTTCATACATTATGTTTTTGCGTTGAAAGCTCAATGAAtatttgacatt
attttttttagcttagGGCCTGGGTCATCAAGGGATAGAATATGCTTTAA
AAGGTGAAACTCATAAGACGAGATTTCGTCTCCAGGTTCCTTCTAATCTt
gtaacagatcatccattctgcgcatacCACGCTCTTCTCTAATGGGATGT
GACGAATATGAAGATCTGCATTCAAAACTGCGTTGTCTTTtacttgaaat
tgaaagtgaaagcGATTTGTTTCTGACTTATATGTTTATGAATGACGTTT
GTTTTGGTGTGATTGTATTACTTTAGCAAGACCACGCTTAAAaggctcat
ttaatattcatcccaaatctggacgaaaaagatcaaagcggtGTGCCAAC
CTGGGTAGATTTACTTATGGCCCATGAGCCAtggcctttagagtgaatac
gtgTTAGCGCGGAGTTATCAGAATCTGCTCGTAGATTCGATACCTTCTGT
CAAACTTTATCGGCCATTTCACTCTATCTTTCTTATGCCTTGAGATGGAT
TCTCAAAACCGCGTTGAGGTAGCTATTTAATATTTAGCATAAATTGTACA
TCCTCTAACATTTTATCTTGAGATCTAGAAACTCTTAATTGTGGAATCAT
ATTAACCCTTCTATCTTctctacatttttttttaaataaagcatGTGAGA
GGTTCGACGAACGAAGGCAGATAAAAGGTGTGCGAAGCTCTGGAATTTta
cgcagaaaaaaaaaacagcatcGGGAAAGGTATTTAATTGTTGCTTTACT
TCTTTTGattcttttgaaattatattacgTATATGGCATACTAATTATCG
ATTTATAGCCTTCGAGAACTCCATTACTTTGTCTCTTCTAgtgatttatt
tttcataagaaactGTAATAATCCTCAGTGATTTTTTACTGTAAGATTTT
ACCAGGAATATTATTGTTGAAAGAATCGTTTGTTTTGGAGACCTAGccag
tttcaaaaataaatatttgtaACCTTCTCTCAACTTGGTTAAGCGTGTGA
TTTAGATTTTCTTacaacaaaaaatgttcttGTGAAAAGCGTTGTGAATT
AGCGAACCTTCACTCCATTGTCAGTTGTCACTCAAAAGAAAACCTATTAA
ATGTCGTGGTCAGATTTACTAAGAAATTTCTTTACGAATGAATAAATGGC
TTAGCCTTGTGAGTGAAGCCGTCTATTGGTTCTGATAATTAATTTCTCTT
GATTTGAAATGCAGTTATTAAAAATGTGCAaaggaaagaaatattttttt
gtccaCGAGAAATTTGGTTATAGAGCACAGGTTGTGGTTTTTCGTTGTCA
CACGCGTCTTGAGCTTTCAGTTGATTTTGTTCTTTTTGCCTCCTTGTCGC
TTTTTGATTGGTAGTTCTGAAgggaaaatgaagattgaagaTTTATGTGT
CAATGATTATCTTTACCTCGATGTCAGATGAAAACTGGTAAGGTTTCTTT
GTTGTTAGGTCGCGGCCCCTAACAAAAACGTTGGTTTTCAAAAAGTTGGT
CACgtacattttgaatttttttactttatttttgaaactttagcaaTCCG
CTGGCCATGGTCTATATTGACTGCTGATCTCTCTTTGTGTTCGAAACGCC
CCTGTCTCGCATTCACGTTAAATACCTATTTACTTAACCAATGGGGAAGT
AGTCGCCTCTGTATACATTTTATTTTCCCTCCGGTCGCTACCCAACCGGA
GCTATTCTACTGTTTTGGAGTTTGAATTATAGGCCTGTGCAAAAACTATG
CAGCATTTCTCAATAAAGATAAATGTATTGGTTAGAGAATACCCACTGCT
CAGGCACTTCGTTCTTTTTTCGATTGTAGCAAGCCTTTTTCACCAAGAAA
CGAAGGAATTTTATTTGACCCATTGGATgcagtttttctttctttctcac
tttGTCAATCCGTTACACTTGTTAAGAATGTGATAGAGATCTGTAGGGTC
ATTCAAAAATTACATAATTCTGCCTATCTTATCTCAAGCTTGTTCCTCCT
TTTTCTACTTTCTGATAAAATCTTTGTCTGATGTTTAACCCGATATCATT
GAAAAGTTTTTCCGGGTTTTAGAATGAGATTTCCGGTGCAATTAGACAGT
AGTTCGGGACGTTCGATAACGGGTCGACAACTCACTCAATTAGAGTCCTA
TGAAAGGCTAATAGCATCTAAATGCTTTGAAATCAAGTTAATGAAAATAC
CTCATGCTATCCATTATTTTTGTTAAACATTGAATTGATATCTATTCAAA
CTGACTAGAATTTTGATCCTTAATTGCATCGCGTGAAACTGTTTTATGAC
ACCCTACTTACTATACAGTAAGTTAATCTTGGCAACTCCTCTTAATGGAG
CTGTTACCCTTAGTAACATATTATACCTATTAGAAAtagcttttttgaga
ttttgcaaCCTGTTTGTTGTCGTTACCAATCCAATACCTTGAACAGGTTG
TTTTAATCcctaatctttgtgtaaacgaGTCCTCAAAATCGTTTTCGAAA
TCTTTGCTTCTCCCATCATAAAGAATTTAATTAGTCTGGATTTTGGTGTT
GACaacctttttaaaattgtttatcaTTTGATGTCGATACATTTACTAGC
TACACTCGCCTCTTACACACCTTTTTCATTAAGAGTTGGAGAAGCTTTTG
TAAGTTCGTTGCTAAttggtttattttgctttggtGTAACTGAAACAGGC
CGTTTAACATGATCATTTAGTAGTTTATTTTGGATAATTGATGCATTTAT
AACTGAATGCGGATGTTCCAAAAATGTTATTGCTGGCTTTTGATTGATAT
TGGAAATCTTTGTTGCTGGGCGTGTCACTTTCATTTTGTTCGGTTGTTTT
CTGTTTTAGAGGGTAGAGAAGTGTCATATTTGCGCAAGAAATCAGAGAGA
GATTTTCAAAGGGTTTTCAAAGATCTTTCAGAGATACCACGTGGAGTAGC
CCTGTCTACTGTGGACCCTCGTATATAAAAGACAGATCTTCAACCAAAAA
GGCTTAATCTTAGAAGATCGGAATGCAAGACTGCTCTGCTCTCGCTCTCC
TTCAACTAAATTGAAATCATTTTGTACTTAGTATACTATTTCTAAACTTG
TTCGTTGAAAAAAGCATAAGAATTTCAGTGATGGGTCTGTGAAAGTATAC
AATCAACTCTACGTATGTAACAACAGTAAAAGTCACGTTTTAGACTTCAA
CTGAATGTGGCGTTAAAAAATCAATGTGGAGCATGAAAGCGAGGTTTTCG
GAAAAAGATAATAAAGAAATAAATTATTTACAGCTCCTTCTCATGCCAAT
AGAATCATCcgaaaaatatttcgttgaGGGGGAACCTAGTTTTACTAGTG
AAAATTCAAAAGGCTTTTAATTGATTTTCCATCAGTTTCTTTTTTATGAC
GAACGCATACATACCGCAGTCTTATTctgttttttatcaatattccAAGA
TTTTACTGTCGATTTACATAACAGAGTATTGAACTTTATATCTACtcatg
aaaaataatatttcgGGTAAAGATTCATCTTAAATCTGATTAAAATGGTA
AACTCTAAGAATTAAAAACCTTCTTAAAGAAAAGAATGGTATTTTTCTAT
ATCTTTGTATGTTACGTAACAGGACCTCTGTATGGTCAGCATAGTCATTT
GTTAAAACAAGGGGCAGCGGAACAATActagggacaagctggagttttta
caagctcttatttgatttagttggtcgttaaccagtaataaaacaatttt
gttactttttctaaagaacgcgtcatctctatcacttcaaatgaacaatt
agtgaagtatcttgtaaaaactccagctcatccccaaTACTAGAGGAACC
AACTTCGCCAAGGGAAATTTGTCATTCATTTTGTTTAAAAGTAGGGTGAC
AATCACTAGCTAAAGCATTGTGTGGTAGCTTTTTAGAAGTTTTTTGAAAC
ACTCCTCTAAGGGAATAGTTTTATTCTCGAACGGAAGCAAGGGCAACTTA
ACATCAAACGATCATCTTATCGTCAGTCTTAGTGAAAAATCATAGGCCAT
TTAGCAGTTGCAAAGCGTAacgggtaatcaggaccactgcgcgctaatga
caACTTACTATTAGTccgaaattttgaagatttttgagcaaccggtcctg
attacccatgattcatttcgactgtgaaatggcctttTTGAAATCGTACA
GGTaaaccattttgaattttacttAAAGACAGTATTTCGCATGTTGTTCA
GGCATTACTTATTGCCGAAACTTTTCCTATAGAAACTGTCAAGCTAgaga
gcttttttgaaggggtgTGAATGGGGTGCGACGTCACGTGAcgttgatga
attttttttggaagttTGACGCTGTAAACAATTAGACTTTGTTGAAGATT
CTGTAAGAATATCGTCCTTCAATGCATGAGGAATCAAGGTTCAGTCAATG
TCAAAGGAGAAGATAAATGTTTTCTGAAAGAAAGATTTGTtgaattctta
atttttaaCAATGAAGTGAAAGATTTTCATGTTATCGGTATGAATGAATA
TTTGACTGGAACATTTCTCAACAAATAAGTTGAATGTCATAACGTTTACC
ATGTGACTAACCATTGTTGGCGACAAGAAAATACTCATTCAATCTTTCAT
CAATACTGATTGAGGAGGCACCATAGTGAAGGATCTTCACCTCATCAATA
ATTGAAGAAAACTTTCTAATTTTACCTTCCAATTCTCAACTACCCTTTCA
cccttttcatgaaaatttaatgaagaaatactttcatcctttctttgtgt
gtttggaatatattcatttatttttgaatttttcatactTTTCCTTTCTC
TCAAATTTGGACAACTTCAGGATTACTTTACATCGCGATGAGGAGAGACA
GATACGCCTTGCTGATATACTTTCATTCTTTTGTGATAGACCAGTTGAGG
CTTGAAGTTTTCGAACAAatcatcttctttttgactacAGTATAAGCCTT
TTTGGGATCAAAAACACACATTTTTCCGTGAGGCTTCCAGAGCCCTATTT
AGTACGCTGAGCGTGACACAAATCATAAAGAGtgtgcttttttgaaaatc
tttgttttttcagcGTGACGAGATGAATTGCATGATGGGAGGGGTTCTCC
CCTTGTTCTATCCATCTTTAATTGGTTATAATTGATTTTAATCGACCAAT
TCGACGCCAAGTTGAATCCCTAATTGGATTGCTTcttttttccttgaaaa
cagCTTGTTTACATCGTTGCACTACCGGGAGTAAACTTGATTATAAATCA
TTAAATATCAGAAATCCTCAGCAAATCCTACGACAGTATCAATTATCTCA
GGACATTTTTtacttaaattttcattttttctttttatgttgATAAAATC
TAGAGATCGTATTGAGACGCGGAACGAAGACAGAAGATGGCTCTTGATTT
CGGCGCCGGTTGCCTAGGAGGTaagtcttttttcaaatttcttttatctA
AGGGCATTTTGCCAATACCAATACTAAGAATCTCTTAATATCAAGGTGAA
ACGATAAACGATGACGGCGATAAACGTTGCCCTCACAAGCATATCTGCCC
TCACAAGCATATCTGGGCCCAGATATTGCAAAGGTTTATGCTAAGCATTA
CCTTGAGCCTACTTTTTCCGTTTTTTGATGGAATTTTACTGATTTTAAGA
ATTTCCCAGAACTTTGGCTTATGATATAAGCATTTTCAGCCTTGTCAATC
TCTCGATCTAAGCATCTCCgagaaagttttttaaaatgtaCCTTAATTTA
ATCTAATTTAAATTAACCTATTAATAGGTAAGCCTGAAAAATTTCGCTCG
AGCCCTGATGATATTCCAGCAACTGTTGAGTAAAATTTATATTGCCAAAA
AATAGTCGATATTGAGAGAAAGATCGTAAAACCAATGGCTAACGAGAAAG
CGCGACAAAGGAACTTTAAACTGAatattttcgttttttcttTACAGGGG
CTGCCGGTGTGGTAGTAGGACAACCTTTTGACACAGTAAAAGTAAGTTTC
GTTAAGGTGTTAGTcaaatttttagctttttaatgACATTTGCACGTATT
GCCCAGGCCCAAGAGAGAAACAGTCAGGGAATTGCACCTAAATGCTCCCC
TTCCCATAGGCACATGCtgattgggctgttccataaaatttccgagcctt
ttcaagtgaaaacaaatttcttggaaaagtgtagatacccccctggaaaa
tggcaaaatttgcaaaagaacccttggaaaaaattcttttcttgtatctc
aaagtgagggtggacgaattAAAATCAGTTgttcaccccctggaaattca
agaataactttttaccccctagaaaaatgaaaaaagtgtgTAAGAGAACG
GTTTTACAACATTTAAACATTACGGATGAGGAAAGAAAGATACGATTATT
TAATATTGACTTtctatattttgtttttcttcaggTTCGTTTACAAGTAC
CTAAAGCTTCGTACCGTGgcgtgtttcattgtttcaccACCATGGTCAAA
GAAGAAAGCGTATGTCTCCTTACATCTTCATCATTCATAGAGATCTTCAT
AGTTTTCTTTGCAATTCTGTCTATCATTAAGCAAGCTCGAACATTAATTT
GCAGATGCTGGAACACAGGCCTACCATACTCAACCCTGTTATTGACACTC
TTCTGAGAAACTTTGTTTCATTTCCTTCACTCTAGTTTTCAGGCTTAATT
ACTCTCTTCTTATCGCACTTGAAAAATTCGGAAACACCAATTCTTTGACT
GATTTGTTATATGTGTAATAAtaatttagtaattttttttcttttcttca
cttttcagATATTCAGTTTATACAAGGGAATGACACCCCCACTACTCGGA
GTGGCTTTTCAAAATGCTATTTTATTTGGATTGCAAGGATATTTCCGACG
TTTCGTTGATGACAGTGTGTCCGGTGAAATGATCGCCGGAGCACTAACGG
GAGCGTCGCAAGCTATTGTTACAGCGCCTATCGAACATGCTAAAATTAAA
CTACAAATTCAAGGCACAGGATGTCCCACACAGAACACACGGAGATATAA
AGGACCTATTCAAACGATTTTACAAATCAGACGTGAGAGTGGTACTAAAA
GTTGTTTTCGTGGACTTCTTGGTGTTGTGTTGAGAGATATGCCAGGAACG
GCTATTTACTTcggatctttttcttttttgaaccaatttttcatccccgA
AGGTGGCGATATAAATTCTTTACGGCCCGCCACGTTACTTTTTACAGGAG
GACTTGCAGGCATGCTTTCATGGGCGGCTTTTTATCCGATAGATGTGATC
AAAACACGTATACAAGCGGAAGGATTGCAACCGCACGGGCGGTATGCTTC
ATATACGGACTGCGCTGTTGTCAGTTTTAAAGAGGAAGGGTATACATGGA
TGACAAGAGGTTTTGGTGCAACCATGTTACGAGCTTTCCCTGTAAATGCG
GCTATTTTCGCTACCGTAACTTTGATCTATCGATATATGAGATCACAATC
GAGTGATGAATATGATGATTGATTGgtgatttgtgtttttttctatgttt
tttttttggctttcaatgtatcaaattattttgttatatttCTGGTTAGA
CTAAGGCTTAGTGCGATTGttggtattttttttactttttttttctctga
taaaaacgaaatttATTACATACTTCATTACGGCATTTTTTGATACCTTT
TGTAACTTTTATACATTATCATTAATTTTATATccgatttatttttttgc
aatacAATGATACAATTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004264XLOC_004264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007543-exon-sc0000078-1491911889:32129..32209TCONS_00007543-exon-sc0000078-1491911889:32129..32209Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1510915933:32129..32209TCONS_00007543-exon-sc0000078-1510915933:32129..32209Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1575043694:32129..32209TCONS_00007543-exon-sc0000078-1575043694:32129..32209Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1491911889:32970..33057TCONS_00007543-exon-sc0000078-1491911889:32970..33057Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1510915933:32970..33057TCONS_00007543-exon-sc0000078-1510915933:32970..33057Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1575043694:32970..33057TCONS_00007543-exon-sc0000078-1575043694:32970..33057Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1491911889:33693..33765TCONS_00007543-exon-sc0000078-1491911889:33693..33765Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1510915933:33693..33765TCONS_00007543-exon-sc0000078-1510915933:33693..33765Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1575043694:33693..33765TCONS_00007543-exon-sc0000078-1575043694:33693..33765Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1491911889:37732..37798TCONS_00007543-exon-sc0000078-1491911889:37732..37798Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1510915933:37732..37798TCONS_00007543-exon-sc0000078-1510915933:37732..37798Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1575043694:37732..37798TCONS_00007543-exon-sc0000078-1575043694:37732..37798Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1491911889:38326..38369TCONS_00007543-exon-sc0000078-1491911889:38326..38369Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1510915933:38326..38369TCONS_00007543-exon-sc0000078-1510915933:38326..38369Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1575043694:38326..38369TCONS_00007543-exon-sc0000078-1575043694:38326..38369Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1491911889:38813..38887TCONS_00007543-exon-sc0000078-1491911889:38813..38887Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1510915933:38813..38887TCONS_00007543-exon-sc0000078-1510915933:38813..38887Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1575043694:38813..38887TCONS_00007543-exon-sc0000078-1575043694:38813..38887Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1491911889:39187..40149TCONS_00007543-exon-sc0000078-1491911889:39187..40149Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1510915933:39187..40149TCONS_00007543-exon-sc0000078-1510915933:39187..40149Clytia hemisphaericaexon
TCONS_00007543-exon-sc0000078-1575043694:39187..40149TCONS_00007543-exon-sc0000078-1575043694:39187..40149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:32129..40149 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.268584	0	0	35.1794	29.9204	17.928	18.1232	7.86218	9.26318	5.12083	4.83312	10.0951	12.0032	7.37553	3.24982	9.42812	4.91337	2.42046	7.05582	10.8541	6.16722	6.13604	9.88611	4.95701	5.15448	31.3526	32.9556	0.434804	0
Blast
[Close]
BLAST of TCONS_00007543 vs. Swiss-Prot (Human)
Match: MCATL (Mitochondrial basic amino acids transporter OS=Homo sapiens GN=SLC25A29 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.933e-69
Identity = 130/287 (45.30%), Postives = 179/287 (62.37%), Query Frame = 3 
Query:  276 MALDFXXXXXXXXXXXXXXQPFDTVKVRLQV---PKASYRGVFHCFTTMVKEESIFSLYKGMTPPLLGVAFQNAILFGLQGY-FRRFVDDSVSGEMIAGALTGASQAIVTAPIEHAKIKLQIQGTGCPTQNTRRYKGPIQTILQIRRESGTKSCFRGLLGVVLRDMPGTAIYFGSFSFLNQFFIPEGGDINSLRPATLLFTGGLAGMLSWAAFYPIDVIKTRIQAEGLQPHGRYASYTDCAVVSFKEEGYTWMTRGFGATMLRAFPVNAAIFATVTLIYRYMRSQSS 1124
            MALDF AGC GG AGV+VG PFDTVKVRLQV    K  YRG  HCF +++K+ES+  LYKG+  PL+G+ F NA++FG+QG   R    DS   + +AGA  GA Q ++  P+E AK +LQ+Q  G      R YKG +  + QI    G +   RG++  +LR+ P   +YF ++  L +    E GD   L    LL  GG +G++SW + YP+DV+K+R+QA+GL+   RY    DC   S++ EG+   TRG  +T+LRAFPVNAA FATVT++  Y R + +
Sbjct:    1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSVEKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSPLNQFLAGAAAGAIQCVICCPMELAKTRLQLQDAG----PARTYKGSLDCLAQIYGHEGLRGVNRGMVSTLLRETPSFGVYFLTYDALTRALGCEPGD--RLLVPKLLLAGGTSGIVSWLSTYPVDVVKSRLQADGLRGAPRYRGILDCVHQSYRAEGWRVFTRGLASTLLRAFPVNAATFATVTVVLTYARGEEA 281
The following BLAST results are available for this feature:
BLAST of TCONS_00007543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MCATL1.933e-6945.30Mitochondrial basic amino acids transporter OS=Hom... [more]
back to top