TCONS_00007604 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007604
Unique NameTCONS_00007604
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007604 ID=TCONS_00007604|Name=TCONS_00007604|organism=Clytia hemisphaerica|type=transcript|length=2363bp
ATTAAATTTGTTATGCTATGATTATAGCACATCTGCTTGACAAAATTAAA
Gccatttcagtgaaaaatatcataagataatttattttttattttagagt
tATTTCCTAGATAAATGATATGGAAATTCAAATTAGCTCTCTATCAAATG
ATTTGCACAAAGCAACAAAAGAAAAGGTGCAAAAACTCGATTCCATTAGA
GGAAAAGAATCATTATTTCCATTCTgggatattattgttttgagtGCCCT
TGATGAGGAACAACAGAGACTCTATGAGACTCAAATAAAAGAGAAGTTAT
CAAGAAAAGAATTACCAATATCACCTACATATCATGTTCTTCATGATCCG
GTTGGTGTCAAAGTTGGAAATGGTGGTGGTGTTATTTCAGTTCTGGATGA
TTTATCCAAAATATATCAagacaatttgaaaaagaagaaagtattGATTT
TGTTATCTGGTGGTTACAGCCAACGTCTTCCATCAGCTAGTCTTCTCGGA
AAAGTTTTCACAGCTCTACCACTTGgtAACCCCATATTCCAAATGATTGA
GTTCAAACTCGCAATGTACATTGATTTCCCCCAACGGATGAAGTCTGGCG
TCTTCGTATCAAGTTCAGACTGTATCGAACTGTATGAGTTAACAGGAGAA
GAATGGACCTTCATGAACCCTGGTGTGACAGCGCTGGCTCATCCATCACC
TATTGACATTGGTACAACGCATGGTGTTTACGTCTTAGACGAACCTGTCG
AAAATATTGTTAAAGAGGCAAGTGTCAAATCAAGAGGAACGACATGCTCA
GCTTTCATGGGCAAATGTTTGAAAATGATTCACAAACCTTCTAAAGAGTT
GATGCGCTCATGTGGAGCTGTCTTTTTGAAGGAGGAGGAAGAATATATTT
ATTCTGATAGTGCTTACTTTATGGATATCGAAACTGGATTGTTACTTTTA
GATTGGTATCGAAAGAGAAATGGTATCCAGTGTGAGATCGATGCGTATGG
TGATTTCTTGCAAGCTCTTGGTCCACAAGCAACCAAAGAATATtgtcaaa
atgtgaaaaatgttACCATGGTAGACGAGGAGTTGATTCCAACGCGAGAA
GAGATTTTCGATGTCCTTCGTCAAACACAATTGAATGTTCTCATGTtgaa
taaatcaaaattttatcacCTTGGAACGACTAAAGAATATTTGgaacatt
tttgtcaagatcATTTGTTCAGgaaCGAAATGTCATGCTCAAATCAAGCG
ATGGTGAAATCATctcaatttttaaaagatctGGATAATAGCATTGTTCT
TATTCATTCCTTGATCAAGAATACTGATGGCATCTCTCGAAATGTTGTCA
TCGAATACACAGAGTTGAGCGAAGGTTGCAGTATAGGATCTAACTCTATC
ATTAGTAATAACGTGTTTCCTGTGGGCGTCTCAGTACCTGAAAAATCCTT
CATACATACCGTGGTTATAAGAGATGAAGGAATGGCAAAATATGTCACTA
TTGCTTTTGGAACTGATgataatttgaagaaaagttgCCAGTCTAGGAGT
GATACTGTGTCGTTGAAGTATGCTAGTCTATCGTTCGATAAAGCTCTTGA
GAAATTGAAGTTATCAAAGGATCCTTGGCCAGAAGAAAGTCCACTATTGA
ATCTGTGGCATGCAAGAATATTTCCTTCATTTTCAAGTCCTGAGCAAGCA
TTACGTCATGGAGCTGCCATGTTGTCTTCGTGTAGAATCGACACGAAATT
TGAAATGGAAAGTAGTGAAGAACGATTGTACTCGATggctgatattttga
aattgaaagacGTGGAGGGTTTTTTGAACATGCGCAGCCAACTTCGACAA
AAAATTGTTGATTAATTTTAGTTAATACAGAACCTGGagatttttctaag
tttttctATTGGCTGTTATGGTTTACTATTACCATGGTGACAggataatt
tgtttttaatccAGGTGTAAGGGCGGGCGTGGACACAACAACTTTATCTG
TTATTAATCTTTCCTCAGGCTGTGTTTCGGTGTGTAAACGCACTGATAGA
GCATGGATAGAGGTATACTTTTCATGAATGCTCTTCTCAGGTGGGCAACT
ACATTTaatgattttcaatgaaagCTAAGCTAAACAGAACGCCCTTACTT
CGGGCGTAACTTGGGGATTTGCTTAAATAATGGTTActgttaatttaatt
tttttatgttgATGTTCAGGATGGATGAGAATGTCTTTGGGAAtaatcat
acacgttttttttaagaaacatatttttaagaaacatgaggctcagaatg
cctaaaaactaagaaacatctaagaaacatgctgaggctgagaatgagaa
aataacatttttt
Run BLAST on NCBI

protein sequence of TCONS_00007604-protein

>TCONS_00007604-protein ID=TCONS_00007604-protein|Name=TCONS_00007604-protein|organism=Clytia hemisphaerica|type=polypeptide|length=581bp
MEIQISSLSNDLHKATKEKVQKLDSIRGKESLFPFWDIIVLSALDEEQQR
LYETQIKEKLSRKELPISPTYHVLHDPVGVKVGNGGGVISVLDDLSKIYQ
DNLKKKKVLILLSGGYSQRLPSASLLGKVFTALPLGNPIFQMIEFKLAMY
IDFPQRMKSGVFVSSSDCIELYELTGEEWTFMNPGVTALAHPSPIDIGTT
HGVYVLDEPVENIVKEASVKSRGTTCSAFMGKCLKMIHKPSKELMRSCGA
VFLKEEEEYIYSDSAYFMDIETGLLLLDWYRKRNGIQCEIDAYGDFLQAL
GPQATKEYCQNVKNVTMVDEELIPTREEIFDVLRQTQLNVLMLNKSKFYH
LGTTKEYLEHFCQDHLFRNEMSCSNQAMVKSSQFLKDLDNSIVLIHSLIK
NTDGISRNVVIEYTELSEGCSIGSNSIISNNVFPVGVSVPEKSFIHTVVI
RDEGMAKYVTIAFGTDDNLKKSCQSRSDTVSLKYASLSFDKALEKLKLSK
DPWPEESPLLNLWHARIFPSFSSPEQALRHGAAMLSSCRIDTKFEMESSE
ERLYSMADILKLKDVEGFLNMRSQLRQKIVD
Run BLAST on NCBI

transcript from alignment at sc0000078:649383..657874+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007604 ID=TCONS_00007604|Name=TCONS_00007604|organism=Clytia hemisphaerica|type=transcript|length=8492bp|location=Sequence derived from alignment at sc0000078:649383..657874+ (Clytia hemisphaerica)
ATTAAATTTGTTATGCTATGATTATAGCACATCTGCTTGACAAAATTAAA
Gccatttcagtgaaaaatatcataagataatttattttttattttagagt
tATTTCCTAGATAAATGATATGGAAATTCAAATTAGCTCTCTATCAAATG
ATTTGCACAAAGCAACAAAAGAAAAGGTGCAAAAACTCGATTCCATTAGA
GGAAAAGAATCATTATTTCCATTCTgggatattattgttttgagtGCCCT
TGATGAGGAACAACAGAGACTCTATGAGACTCAAATAAAAGAGAAGTTAT
CAAGAAAAGAATTACCAATATCACCTACATATCATGTTCTTCATGATCCG
GTTGGTGTCAAAGTTGGAAATGGTGGTGGTGTTATTTCAGTTCTGGATGA
TTTATCCAAAATATATCAagacaatttgaaaaagaagaaagtattGATTT
TGTTATCTGGTGGTTACAGCCAACGTCTTCCATCAGCTAGTCTTCTCGGA
AAAGTTTTCACAGCTCTACCACTTGGTAAGTAAGTTTTCTATTTGTCTTT
TAGAGAGAATATAGTTTTAGAGCGAccatagtgcagtggtagagcatccg
ccTATGATGCGCAAGGTAGTGGGTTCAACCCTAAGCCGGGTCATTCCAAC
GATTCTTGATGCCTCTTtgaattaagagaaggatcaagggtaagtggagc
aatccagggagaaagagtggcgccctcccctaccttcgagtAGATAGCag
cagctatcgaaagaggtgCCTTTGGGTCGCCTCCAACTACGGTCGCAGGC
TTACTTACTCAGAGAGAATATGATAAGTTTGATAAATTTGACAGTGCAAA
AATTATTATCTCCTTTGTCTGGAGCAATAATCTCCAATTTGAACCGATTC
CCGCACCTCGGATTTTATATGGTTTTTGGTCGAAATGAAAAAGCCCTTAA
AGTACCGAGAATAGGGTGTGTGCAacaaaatgaaataataataatacagt
AATAGATTAATGCGAACTAGAGAATGAATGGCTTCAATGGAAaccctttt
taaactttgactAAGACATTGGGGTAGCCAAAGCTTAAATCCTTGCCTTA
GTATGAGTGGTGACTCAATCGACTGGGGATTAAGCTAATTTTCAACTCCA
AATAAACTGGTGTATCATGGGTTTGGTGGTTTATTTCAatagtttttttc
tgtttaatatTTTTGCCTATACTACCAATATATCTATCTGTCTTTTATCT
GAAAGACAGTTTCGTAGCAGATCTATGAAGAATGAATACCACCATGTGGA
TTTTTAAATGGAATTTAACAATCAACAAATTCTCATTTTCTTGAACGGAA
TTGGGTTAAGGGGGTGGAAAACagtctttaaaaatacaaacgATTAAAGA
TAAAAGGTTTTATAGCTGGTTTGAAGGATCTTAAAATAAAGTTATTCTGG
ATTTCATATTGTGGTGGAGTTGATGgcaaatttcaataaaatatttGCAA
CCAATACACttatttattattataaatTATAATTAAATAAAGGTAGCTGG
TAGATCACTTGTTTTTGGTGTACTTTTTTGTAGCGGGCTTGTTTGTGGCG
GGCTTGTTGATGGCGAGCTCGTTGATGGTGGGCTTGTTGATGGCGAGCTT
TTTGGTGGGAGAAGGGTGGTGATGTGACATAAATTACATGTCTTTCTACA
TTGAGTTTTGACATAAGAATGATAACTACAATATTGTTTCTTCCATTTTG
GACAATTAGGATTTAAATCCTCGCATGTACCTATCAATAAAGAAAGTTAT
ACTTGCTTAAAGTTGGAAGATACAACTAATGCTGATTACGAATATACGAA
TATTTTAGGATACCCAGTTAACAATTTGAGTCTgaatactttttttaaac
agTCTACCCTCATCGGGAGGGGTATCCTTTCTCTGCCCATCAATTTATAA
AGATTCCTTTTTGAGAGCCTCAATTTTGTAACCCCCCTTGTCTCTGATTT
GTGAGAAAAGGGCACTTTATTGAAGTTCATATGAAAAaagaagctttttt
attttaagaaagatACCTGGGCATATGTTACAAGTTTTTTGGCAGTTAGC
TTTGACGAAAGAGTCGATATCGCAAAAATTGGTCCATCGTGAACAATACT
TGTTTTTGTCCTCGCAgcctaaaaacaaaatttgaaaattgttattGTTT
GATTGATTTATAGCTGACTCAGCTAAATTTGTCAAATTgttatttgaaaa
atatctgaaGATGAGTTTCTCAAGTAACCCAAACATGACCCATTTACCTC
AAACCATAACTGAGAAAATCCACTAAACGTTGCTCATTGAAAACCTCctg
aaatttgaatttaccATTATACTGAAGAAGCCATTAGCGAGTtcatgtat
tcgagataaatcaaGGGGGACGGTACAAAGCCAAGTTGTCTCCAAAaccc
gtccactttgctcgatgacggtaaaaacaccaaaaaaccgtcgtctgttt
aggtgagcaaaggcgatattgAGCCGTACATcgactatcgactttgtttt
gtatcgatttcacttaccgtcgccctcgatatcctccgatacataaactc
ggtattgggTACGTGGTGTCAGTAATTTAAAGCGTGACAGCTGTACGTAA
ACGAGTACAAAATAGATGGGTAATAATTAAGAATTGAACTTTGAAAGCAT
AAATTTCATGACGGCTGAGATCTATTTCGTTTTATCCCAAGAAAATTTCT
ATTAGCTACGTTATTCCTTACCTAGAGTGACGCTGGCCACAATCAGAGAT
GCTAAAACTACGATCAAGGTCTTCATATTGTAGATTGATTTGCCGttcaa
aaaaaacattaattttataaatgaaaatttgGCCAACCGAAGCAATACaa
ctatttcaaaatataaaaccgAAATCAGTTTCCACAAAGATCATCGACAA
GCTGTGTTTGCGAGAAGGTTAAATATTATGTTTCCCAGTCTATGTTTGTA
TTATGGGTTTGATAGGGTTTGTTTAATTTGAACTAGCAACTCACACTTTG
TCTTGGGAGGTACGTCATCGTTACCTGATTTTCATTGCCAAAGCTCAAAC
CATAACCGTAGTCTGACTAGATTACctaaattttgctttgaaagcTTAAC
CGACTAGCAGAACGATcatataaaaaagttaaaacgttatttggacgttg
aTCTTAACACAGCGATTTGTTTACCAAGACAGTAGAGTAGTGTGACGCGG
GAAGAGGATGTACGGGCCTCCCCTGGCACGGTAAGCGAATTGTTTTTTAT
GTCCCAGGCGTTTAAGATCTGAACCGCCTCTAGAAGACGGGGAGGAGTAG
AATGTACAGTGGAATTCAGAGGGAGACAGTGGAACACAGTagacattatt
tttttcaaaacatgttTCACACGAATATATATTAAGATAAATAACGTTCA
GCTTACGATAAATTAATACTTCTTTAAATATTTAAGGTCTGCGTACAGAC
GTTGTTGTTATCTCGAGATAGCAACTTGCTTTCGATTGATCACCTTCCGA
CATACGATATGGGAAACCTCAGCGGGCATCCTCCACGGGCATCTTCAAAC
AGGCATCTTCAAACAGATATGCGATCCATAGTTCGCGCATCCACCAAACG
GTGGGAAAATGTGATCGAGCGTGGGAGTAGCCTTTGATAaacctaggctg
ctggcatctaCTAACGGATTccgattcgtgctccttatagaaaaaaaacc
gAACCGGAAAGCAGGTGGTAGAttattaagcagacctatactacctacAG
TTTtttagaggtctgcgattcagagaCTATGATAAACCTGGTCTGGAGAC
CAGGCGACAGAGTTTACTGAAGTTCTCACTTTCACGTAAGAAGGAATTGC
AGATGGTATGCGAAGTAAGCATTGTTGGTAGACCTGGTCGCTACTAGGAC
AGGGTCCGCAGAAGCCTATGTCCATGCAATTCTTTTTTTCTCCAAGTGAC
TCGGGATGATCTTCGTCGCAGGTCTTTCTCGGCCGAGCGCTAGTTGAGAA
TCCCTCTAAATTCTAATCTAATCGAAAAATTCGAATCTTACGCATGATGC
ATTTTTCTACAACATTCAATTACATAATTCCTATATATTAAACCTTCATG
ACAGTAGCTTACCTATGGAAATGATATGGTTGAGTGAATTTTCGCCATGT
TAGGTTTCGAAATTAAAATGTAGTTTTGAGGCTTACACCATCATCAGTTA
GGTGAGACCAATTTAACTTGTTTTGCCGCTACAATGAAGAATTGAacata
aatttcttaaaatcttggaaaaactaaagtaaagcaatgaaaataaaaat
gtactaccaaaatgaattttgtttttattttgatttttagattttcaggG
TCTGTCGGGCCCGTCGAGCAACTAATCAAATTATGGTCTCGCCTTATCGT
ATAAAGTAAAACAAAAGTAACAaagttattgaaaaaaaatcggcAAAATA
TTTGGTTTTTATAGTtctataacttttatttttaggtAACCCCATATTCC
AAATGATTGAGTTCAAACTCGCAATGTACATTGATTTCCCCCAACGGATG
AAGTCTGGCGTCTTCGTATCAAGTTCAGACTGTATCGAACTGTATGAGTT
AACAGGAGAAGAATGGACCTTCATGAACCCTGGTGTGACAGCGCTGGCTC
ATCCATCACCTATTGACATTGGTACAACGCATGGTGTTTACGTCTTAGAC
GAACCTGTCGAAAATATTGTTAAAGAGGTTTGTTCATTCAATTTCTCTGG
TACAATACTTATTTTGATAACATTCAGCTTTTGCACCCTAGCTATTCGAC
AGAGTAAGATCCTTAAAAGAGGAAGGATTTGATATCCTTTGGGGAAGAAA
ACGTCTCGGTTTTTTTAACGACGGTCGACTGACGACGATTCTCAGCTCTG
GCCTTCAAAAGGACGGTAAAAACAGTCATTTGCTGCATTAATACTAAATG
AACCACAGAAATTTCCCTTCTTTGTCCTAGTACTCATGGAGTTAATCAAA
AGCAGAAGATGAGATACGATAGAGTCTCTTTGACTCGAATGTCTCCTATA
CAAGTTTTCTCAACCCTTTGgtcaacaatgccttataaatctTACTCCAC
AACttcaaatttccttaactcgaacaaatttgtggtcCCTGACCGTGCAG
ACTCAAGTtttggagactctactgtattgcaataaataaaaaaacgtttc
tTTCTTTTGCAGGCAAGTGTCAAATCAAGAGGAACGACATGCTCAGCTTT
CATGGGCAAATGTTTGAAAATGATTCACAAACCTTCTAAAGAGTTGATGC
GCTCATGTGGAGCTGTCTTTTTGAAGGAGGAGGAAGAATATATTTATTCT
GATAGTGCTTACTTTATGGATATCGAAACTGGATTGTTACTTTTAGGTGA
GTTAAAGGTTTtacttttacataagtgttcccgtttcatatcagacacat
atttcatatcaggacagtgtctccttttggttatattgtgctgaataaac
aaaaatatgtttttcttctctttattctgaccaatcttgttcCACATTTG
TGTCAATTCAAAGtgaaagcttgtaaattaaaattgagtaagcaaacgag
atcactcttatttaaaaacaaaacctttaaatgtcAATATATAATTCGCG
AAGACTGGAAGAAAATGTAACAGGCTAGTGACTATACGAAACGTGATTGG
tggaaactcactagcctgttacatTTTCTGTTCGTCATCCTCGTGATTAT
ACCGAAACTTGTCTagttcattttgagaaaataaaaacttctcGAAGACC
ATTGATATTGTTAAAAGCTGAATATCAGAATATCAGACTACGAGAGTAGA
GAGGTCAAAAGACTTTGAGTATATTTCAAATGGCCATAAATTTTCCATGC
TGGAACTCTTATTTATTTGTTAAATCTACGTTAAATCCACGCGATATACG
ATTTCAAGGCATTTGAACCGAGCTCAAGCCACAGAAGCCTCTGAGAATCA
AGACTGTCTCGACAGTCATTTCACTGTTTGGTGTCGGGGCTGGTCGGGGA
AATGGATGGCTGTAGTTTctcaaatgtttttcattgacAGTGATATTACT
TCATCTATCTTCATTAGATTGGTATCGAAAGAGAAATGGTATCCAGTGTG
AGATCGATGCGTATGGTGATTTCTTGCAAGCTCTTGGTCCACAAGCAACC
AAAGAATATtgtcaaaatgtgaaaaatgttACCATGGTAGACGAGGAGTT
GATTCCAACGCGAGAAGAGATTTTCGATGTCCTTCGTCAAACACAATTGA
ATGTTCTCATGTtgaataaatcaaaattttatcacCTTGGAACGACTAAA
GAATATTTGgaacatttttgtcaagatcATTTGTTCAGGTATAGTGAAGG
TTCatggaaaataaatttgattcgAGTTTGGTTCGATACTACAGTAAAAC
CCCCACTTCATGCAGCGGGATCCCCTAAACATTGTAACATCGGCCAAAAA
ACTCTACTATAAGGGACTTTATTTTGGGCGAGCagcaaaaatcctaaaaa
attttagtttcgcaaaaattagttctcgctaaaataaaataaaaatactc
cCTTGTCCGATAAAGTACCTCAAATTCCATGCTCTATCAGATAGAATCAA
TCGTTTCTGCAACCCTTTTCAGCCCATCTCTCTTCCATGAATCTTTAgcg
caaaactttttaaatgtatatttttttctctttttaggaaCGAAATGTCA
TGCTCAAATCAAGCGATGGTGAAATCATctcaatttttaaaagatctGGA
TAATAGCATTGTTCTTATTCATTCCTTGATCAAGAATACTGATGGCATCT
CTCGAAATGTTGTCATCGAATACACAGAGTTGAGCGAAGGTTGCAGTATA
GGATCTAACTCTATCATTAGTAATAACGTGTTTCCTGTGGGCGTCTCAGT
ACCTGAAAAATCCTTCATACATACCGTGGTTATAAGAGATGAAGGAATGG
CAAAATATGTCACTATTGCTTTTGGAACTGATgataatttgaagaaaagt
tgCCAGTCTAGGAGTGATACTGTGTCGTTGAAGTATGCTAGTCTATCGTT
CGATAAAGCTCTTGAGAAATTGAAGTTATCAAAGGTATGCAATCCTTTTC
GCTCTATTCATGCAATTTTCTTATAAACCtaaaattttttgtgaaaactt
tAAAAGGTTCAAAACCAAACGATGAATTTGGATCTCTTCTCAGAAAGTTT
TCGTTGAAATAAATTGTTAGTAACCACCATAGGGGATATGGTTTTCGAGG
ATTATTTTCATATAACCTGCTGCTCATTATAGAGGAGTAGTATTTGACTC
CGTCCAAAAATAATTAACTcaggaaaaattttcttttaatgagaaaattt
taaattatttttcgaaaaattatgaaaaattgcgAATAATTCTGAAAAAG
ATTGTATTCTGAAACTCACTAATTTTAGTACCAATGTattaaaaaattct
caaattttagtTTGGATACCACCTTTTTTGGTAGTTTAGTACCCATTGTA
CTAAAAGGTTTTTTATATATACCACTACGTCACTAAGCATCATTATGTCT
CTGATTTACTACTACTGACCCCCCCCTCTATGGTGCCAAGAAAACGAAAT
AGattctttctttgaaaatatttgaaaaaaaaattgatttgttttCAGGA
TCCTTGGCCAGAAGAAAGTCCACTATTGAATCTGTGGCATGCAAGAATAT
TTCCTTCATTTTCAAGTCCTGAGCAAGCATTACGTCATGGAGCTGCCATG
TTGTCTTCGTGTAGAATCGACACGAAATTTGAAATGGAAAGTAGTGAAGA
ACGATTGTACTCGATggctgatattttgaaattgaaagacGTGGAGGGTT
TTTTGAACATGCGCAGCCAACTTCGACAAAAAATTGTTGATTAATTTTAG
TTAATACAGAACCTGGagatttttctaagtttttctATTGGCTGTTATGG
TTTACTATTACCATGGTGACAggataatttgtttttaatccAGGTGTAAG
GGCGGGCGTGGACACAACAACTTTATCTGTTATTAATCTTTCCTCAGGCT
GTGTTTCGGTGTGTAAACGCACTGATAGAGCATGGATAGAGGTATACTTT
TCATGAATGCTCTTCTCAGGTGGGCAACTACATTTaatgattttcaatga
aagCTAAGCTAAACAGAACGCCCTTACTTCGGGCGTAACTTGGGGATTTG
CTTAAATAATGGTTActgttaatttaatttttttatgttgATGTTCAGGA
TGGATGAGAATGTCTTTGGGAAtaatcatacacgttttttttaagaaaca
tatttttaagaaacatgaggctcagaatgcctaaaaactaagaaacatct
aagaaacatgctgaggctgagaatgagaaaataacatttttt

Coding sequence (CDS) from alignment at sc0000078:649383..657874+

>TCONS_00007604 ID=TCONS_00007604|Name=TCONS_00007604|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at sc0000078:649383..657874+ (Clytia hemisphaerica)
ATGGAAATTCAAATTAGCTCTCTATCAAATGATTTGCACAAAGCAACAAA
AGAAAAGGTGCAAAAACTCGATTCCATTAGAGGAAAAGAATCATTATTTC
CATTCTgggatattattgttttgagtGCCCTTGATGAGGAACAACAGAGA
CTCTATGAGACTCAAATAAAAGAGAAGTTATCAAGAAAAGAATTACCAAT
ATCACCTACATATCATGTTCTTCATGATCCGGTTGGTGTCAAAGTTGGAA
ATGGTGGTGGTGTTATTTCAGTTCTGGATGATTTATCCAAAATATATCAa
gacaatttgaaaaagaagaaagtattGATTTTGTTATCTGGTGGTTACAG
CCAACGTCTTCCATCAGCTAGTCTTCTCGGAAAAGTTTTCACAGCTCTAC
CACTTGgtAACCCCATATTCCAAATGATTGAGTTCAAACTCGCAATGTAC
ATTGATTTCCCCCAACGGATGAAGTCTGGCGTCTTCGTATCAAGTTCAGA
CTGTATCGAACTGTATGAGTTAACAGGAGAAGAATGGACCTTCATGAACC
CTGGTGTGACAGCGCTGGCTCATCCATCACCTATTGACATTGGTACAACG
CATGGTGTTTACGTCTTAGACGAACCTGTCGAAAATATTGTTAAAGAGGC
AAGTGTCAAATCAAGAGGAACGACATGCTCAGCTTTCATGGGCAAATGTT
TGAAAATGATTCACAAACCTTCTAAAGAGTTGATGCGCTCATGTGGAGCT
GTCTTTTTGAAGGAGGAGGAAGAATATATTTATTCTGATAGTGCTTACTT
TATGGATATCGAAACTGGATTGTTACTTTTAGATTGGTATCGAAAGAGAA
ATGGTATCCAGTGTGAGATCGATGCGTATGGTGATTTCTTGCAAGCTCTT
GGTCCACAAGCAACCAAAGAATATtgtcaaaatgtgaaaaatgttACCAT
GGTAGACGAGGAGTTGATTCCAACGCGAGAAGAGATTTTCGATGTCCTTC
GTCAAACACAATTGAATGTTCTCATGTtgaataaatcaaaattttatcac
CTTGGAACGACTAAAGAATATTTGgaacatttttgtcaagatcATTTGTT
CAGgaaCGAAATGTCATGCTCAAATCAAGCGATGGTGAAATCATctcaat
ttttaaaagatctGGATAATAGCATTGTTCTTATTCATTCCTTGATCAAG
AATACTGATGGCATCTCTCGAAATGTTGTCATCGAATACACAGAGTTGAG
CGAAGGTTGCAGTATAGGATCTAACTCTATCATTAGTAATAACGTGTTTC
CTGTGGGCGTCTCAGTACCTGAAAAATCCTTCATACATACCGTGGTTATA
AGAGATGAAGGAATGGCAAAATATGTCACTATTGCTTTTGGAACTGATga
taatttgaagaaaagttgCCAGTCTAGGAGTGATACTGTGTCGTTGAAGT
ATGCTAGTCTATCGTTCGATAAAGCTCTTGAGAAATTGAAGTTATCAAAG
GATCCTTGGCCAGAAGAAAGTCCACTATTGAATCTGTGGCATGCAAGAAT
ATTTCCTTCATTTTCAAGTCCTGAGCAAGCATTACGTCATGGAGCTGCCA
TGTTGTCTTCGTGTAGAATCGACACGAAATTTGAAATGGAAAGTAGTGAA
GAACGATTGTACTCGATggctgatattttgaaattgaaagacGTGGAGGG
TTTTTTGAACATGCGCAGCCAACTTCGACAAAAAATTGTTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004291XLOC_004291Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007604-proteinTCONS_00007604-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007604-exon-sc0000078-1491911889:649383..649907TCONS_00007604-exon-sc0000078-1491911889:649383..649907Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1510915933:649383..649907TCONS_00007604-exon-sc0000078-1510915933:649383..649907Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1575043694:649383..649907TCONS_00007604-exon-sc0000078-1575043694:649383..649907Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1491911889:653918..654159TCONS_00007604-exon-sc0000078-1491911889:653918..654159Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1510915933:653918..654159TCONS_00007604-exon-sc0000078-1510915933:653918..654159Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1575043694:653918..654159TCONS_00007604-exon-sc0000078-1575043694:653918..654159Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1491911889:654645..654828TCONS_00007604-exon-sc0000078-1491911889:654645..654828Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1510915933:654645..654828TCONS_00007604-exon-sc0000078-1510915933:654645..654828Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1575043694:654645..654828TCONS_00007604-exon-sc0000078-1575043694:654645..654828Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1491911889:655550..655820TCONS_00007604-exon-sc0000078-1491911889:655550..655820Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1510915933:655550..655820TCONS_00007604-exon-sc0000078-1510915933:655550..655820Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1575043694:655550..655820TCONS_00007604-exon-sc0000078-1575043694:655550..655820Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1491911889:656170..656566TCONS_00007604-exon-sc0000078-1491911889:656170..656566Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1510915933:656170..656566TCONS_00007604-exon-sc0000078-1510915933:656170..656566Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1575043694:656170..656566TCONS_00007604-exon-sc0000078-1575043694:656170..656566Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1491911889:657131..657874TCONS_00007604-exon-sc0000078-1491911889:657131..657874Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1510915933:657131..657874TCONS_00007604-exon-sc0000078-1510915933:657131..657874Clytia hemisphaericaexon
TCONS_00007604-exon-sc0000078-1575043694:657131..657874TCONS_00007604-exon-sc0000078-1575043694:657131..657874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:649383..657874 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28686	2.50442	1.69277	1.77685	1.74369	1.49974	12.1164	12.3249	3.67424	4.83746	2.50259	2.59955	2.51339	1.43992	2.61941	3.84469	5.7528	5.68921	2.42372	3.59969	3.10215	2.9319	2.86036	4.28635	2.09195	2.91824	3.67598	2.27738	3.65871	3.31849
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012887Fucokinase
Vocabulary: Molecular Function
TermDefinition
GO:0016772transferase activity, transferring phosphorus-containing groups
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups
Blast
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BLAST of TCONS_00007604 vs. Swiss-Prot (Human)
Match: FPGT (Fucose-1-phosphate guanylyltransferase OS=Homo sapiens GN=FPGT PE=1 SV=2)

HSP 1 Score: 389.037 bits (998), Expect = 2.956e-124
Identity = 237/589 (40.24%), Postives = 348/589 (59.08%), Query Frame = 3 
Query:  153 LHKATKEKVQKLDSIRGK-ESLFPFWDIIVLSALDEEQQRLYETQIKEKLSRKELPISPTYHVLHDPXXXXXXXXXXXXXXLDDLSKIYQDNLKKKKVLILLSGGYSQRLPSASLLGKVFTALPLGNPIFQMIEFKLAMYIDFPQRMKSGVFVSSSDCIELYELTGEEWT-FMNPGVTALAHPSPIDIGTTHGVYVLDEPVENIVKEASVKSRGTTCSAFMGKCLKMIHKPSKELMRSCGAVF-----------------LKEEEEYIYSDSAYFMDIETGLLLLDWYRKRNGIQCEIDAYGDFLQALGPQATKEYCQNVKNVTMVDEELIPTREEIFDVLRQTQLNVLMLNKSKFYHLGTTKEYLEHFCQDHLFRNEMSCSNQAMVKSSQFLKDLDNSIVLIHSLIKNTDGISRNVVIEYTELSEGCXXXXXXXXXXXVFPVGVSVPEKSFIHTVVIRDEGMAKYVTIAFGTDDNLKKSCQSRSDTVSLKYASLSFDKALE--KLKLSKDPWPEESPLLNLWHARIFPSFSSPEQALRHGAAMLSSCRIDTKFEMESSEERLYSMADILKLKDVEGFLNMRSQLRQKI 1856
            L +AT+ K+++   +RGK  +   FWDI+ ++A DE+Q+  Y  Q+ EKL RKELP+   YHV  DP G K+GNGG  +  L  L K+Y D      +L++ SGGYSQRLP+AS LGK+FTALPLGNPI+QM+E KLAMYIDFP  M  G+ V+ +D IELY +   E+  F  PG TALAHPS + IGTTHGV+VLD P +++ K   ++ R          C + +HKPS E M    AV                  LK + +Y+Y+DS ++MD ++  +LL +Y K   + CEIDAYGDFLQALGP AT EY +N  NV   + EL+  R+ IF +L+ T LNV++LN SKFYH+GTT+EYL +F  D+  ++E+   +          +    +  +I S++ +   ++   V+EY+ L    S+G N IIS +      ++P  SF+ ++ ++     KY T+AFG  DNLKKS ++ SD   L++  + F   L+   LK++++ +      L+LW ARIFP  SS   ++     ML++ +  + F + S   +L S+ ++L  KDVE  +  R Q+  +I
Sbjct:   12 LREATQRKLRRFSELRGKLVARGEFWDIVAITAADEKQELAYNQQLSEKLKRKELPLGVQYHVFVDPAGAKIGNGGSTLCALQCLEKLYGDKWNSFTILLIHSGGYSQRLPNASALGKIFTALPLGNPIYQMLELKLAMYIDFPLNMNPGILVTCADDIELYSIGEFEFIRFDKPGFTALAHPSSLTIGTTHGVFVLD-PFDDL-KHRDLEYR---------SCHRFLHKPSIEKMYQFNAVCRPGNFCQQDFAGGDIADLKLDSDYVYTDSLFYMDHKSAKMLLAFYEKIGTLSCEIDAYGDFLQALGPGATVEYTRNTSNVIKEESELVEMRQRIFHLLKGTSLNVVVLNNSKFYHIGTTEEYLFYFTSDNSLKSELGLQSITFSIFPDIPECSGKTSCIIQSILDSRCSVAPGSVVEYSRLGPDVSVGENCIISGSYILTKAALPAHSFVCSLSLKMNRCLKYATMAFGVQDNLKKSVKTLSDIKLLQFFGVCFLSCLDVWNLKVTEELFSGNKTCLSLWTARIFPVCSSLSDSVITSLKMLNAVKNKSAFSLNSY--KLLSIEEMLIYKDVEDMITYREQIFLEI 587
The following BLAST results are available for this feature:
BLAST of TCONS_00007604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FPGT2.956e-12440.24Fucose-1-phosphate guanylyltransferase OS=Homo sap... [more]
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