TCONS_00007605 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007605
Unique NameTCONS_00007605
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007605 ID=TCONS_00007605|Name=TCONS_00007605|organism=Clytia hemisphaerica|type=transcript|length=1841bp
CTTCATTCAAAATAAATCGTAGGAGAAAAGGAGGGAAAGATTTcaaacaa
agaaccaaaaagaaGAAATCTTGGTCATAAAATCAGAAATAAAATCCACT
GTGCAGTAGTAGCACGGAACGGAGCATGTAGGTTTTCAATACAAAATGGT
GCAAGAGATATTACTGCAAAACAGAGGACTAAAAATGACGAAAGAAGAGA
GTTTAGATGGCGAGACAATGACGTTATCTGAAAAATGGAAAGAATTTTGC
GATGAGACGACCATCCATGGTTTCCGAGCAGCTTTTTTTTCAAGGAATAC
CTGTCTGAAAGTTTTCTGGAGAATCTTGCTTATTCTGGCAACTCTACTGG
CGGGGTTCCTCTTCTATGGCGTATTGATGCAATATTTGAAATACGAATTC
AAAGTCTCCAAAGAAATAGATTTTAATATGGATGAAGTCAATTTCCCAAG
GGTGACCATCTGTAACATAAATTCATTATCTCAGAAGAAAATCAACGAGC
TTGGTTACCAAGGAGACGTGGATGAACTGATAGACTTCTACCACCAAATG
CGTGGAAAGACTTTGAATGTATCCTCACCGGACACGAAGCGCATTTTAAA
TTACTTTTACGCTAAGAATCTGAATAAAACGCATGACATAATATCAGCTT
TTGAGCTTGGTAAAAGAGAAATGTTAGATGATCCGTTCATGAGAAGAGTA
TTTCCCTTTTCGTGCAAATACGAAAACAAGCCATGCAGCGTGGATAATTT
CACTGAGATCTTCTCTTTCTCATACGGAAAATGTATTGCTTttcccaaaa
ataaaaaagatgttttgAAAGGGAAATTTTCGGGGCCTGGGCTCCAGTTG
ACGTTAAACATCCACGAGGAGGATATGTTGGACAGTCGAGCCACTTTCAA
CGGTTTGGCCGTGTTCATCCACCACCAACGAGAGACGTACAGATCTGATC
TTTCCAAGAAGGTCTTCGTACCTCCAGGAACTATGAACAACATACACATC
ACAGTCAGTATGTTAGAATCACTGCCACCTCCTTACTCAACGAAATGCGG
TTCAAAAAAATATGAAGTGATTGATCCAAATTTCGCTTACTCAGCAAATT
TGTGTGCAGTTGATTGTATCTCAAAGATTTATTCAGAAGAATGCGGCTGT
CTGACATCAGATctgaaaaagtttcaagATAATATACCGGAATGCAGTAT
GGAGCAATATGATTGTTATGTTAGAGtGTACAACCACCTCCTTGATAACA
GGACTTACAGAAAATGTTACCAGACCTGTCCGACACCTTGCACCATGGAA
ACTTTCTCACTACAAACCGGACAGGCGAAGATTGGAAcaaagtttttata
caaaagGTTATCTGAAATGAGGAACTTGACATTTCAAGAAAGTCAAGATT
ATATCAGCCATAATGTTGTAGGTCTGAATATCGCTTTCGCAGATGTGATt
tatacaaaagaaaaattaacgCCATCCGTAGATTGGAAAGTGTTGTTAGC
AACAATTGGTGGAAGCTTGGGCTTGTGTCTCGGATGCAGTCTAATTACCA
TAATCGAGTTCATTGTTTTTTGCCTCACTTACCTTCCATTCAACAAACGA
AAAACTCAACCAAGTACCAAATGAATCGAGACAAATAAATGACGTCACTC
ACAGTATTTACCTCAGATAAGAACCGTCATCCAGACCCAATTTTTCGTTC
ATGGAATTTCATAAGTTTTTAAAGAAGATACAAGTAGCGTTCTTATGATT
ACTCAGCATTCCGTTACCAAAAGGTATTCTTCAATTGCTCAATAGTAGAG
ACAAATCAAAACAGTCTGATGTAATTGGGGGTGATAACACA
Run BLAST on NCBI

protein sequence of TCONS_00007605-protein

>TCONS_00007605-protein ID=TCONS_00007605-protein|Name=TCONS_00007605-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MVQEILLQNRGLKMTKEESLDGETMTLSEKWKEFCDETTIHGFRAAFFSR
NTCLKVFWRILLILATLLAGFLFYGVLMQYLKYEFKVSKEIDFNMDEVNF
PRVTICNINSLSQKKINELGYQGDVDELIDFYHQMRGKTLNVSSPDTKRI
LNYFYAKNLNKTHDIISAFELGKREMLDDPFMRRVFPFSCKYENKPCSVD
NFTEIFSFSYGKCIAFPKNKKDVLKGKFSGPGLQLTLNIHEEDMLDSRAT
FNGLAVFIHHQRETYRSDLSKKVFVPPGTMNNIHITVSMLESLPPPYSTK
CGSKKYEVIDPNFAYSANLCAVDCISKIYSEECGCLTSDLKKFQDNIPEC
SMEQYDCYVRVYNHLLDNRTYRKCYQTCPTPCTMETFSLQTGQAKIGTKF
LYKRLSEMRNLTFQESQDYISHNVVGLNIAFADVIYTKEKLTPSVDWKVL
LATIGGSLGLCLGCSLITIIEFIVFCLTYLPFNKRKTQPSTK
Run BLAST on NCBI

transcript from alignment at sc0000078:154062..159588-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007605 ID=TCONS_00007605|Name=TCONS_00007605|organism=Clytia hemisphaerica|type=transcript|length=5527bp|location=Sequence derived from alignment at sc0000078:154062..159588- (Clytia hemisphaerica)
CTTCATTCAAAATAAATCGTAGGAGAAAAGGAGGGAAAGATTTCAAACAA
AGAACCAAAAAGAAGAAATCTTGGTCATAAAATCAGAAATAAAATCCACT
GTGCAGTAGTAGCACGGAACGGAGCATGTAGGTTTTCAATACAAAATGGT
GCAAGAGATATTACTGCAAAACAGAGGACTAAAAATGACGAAAGAAGAGA
GTTTAGATGGCGAGACAATGACGTTATCTGAAAAATGGAAAGAATTTTGC
GATGAGACGACCATCCATGGTTTCCGAGCAGCTTTTTTTTCAAGGAATAC
CTGTCTGAAAGTTTTCTGGAGAATCTTGCTTATTCTGGCAACTCTACTGG
CGGGGTTCCTCTTCTATGGCGTATTGATGCAATATTTGAAATACGAATTC
AAAGTCTCCAAAGAAATAGATTTTAATATGGATGAAGTCAATTTCCCAAG
GGTGACCATCTGTAACATAAATTCATTATCTCAGAAGAAAATCAACGAGC
TTGGTTACCAAGGAGACGTGGATGAACTGATAGACTTCTACCACCAAATG
CGTGGAAAGACTTTGAATGTATCCTCACCGGACACGAAGCGCATTTTAAA
TTACTTTTACGCTAAGAATCTGAATAAAACGCATGACATAATATCAGCTT
TTGAGCTTGGTAAAAGAGAAATGTTAGATGATCCGTTCATGAGAAGAGTA
TTTCCCTTTTCGTGCAAATACGAAAACAAGCCATGCAGCGTGGATAATTT
CACTGAGATCTTCTCTTTCTCATACGGAAAATGTATTGCTTTTCCCAAAA
ATAAAAAAGATGTTTTGAAAGGGAAATTTTCGGGGCCTGGGCTCCAGTTG
ACGTTAAACATCCACGAGGAGGATATGTTGGACAGTCGAGCCACTTTCAA
CGGTTTGGCCGTGTTCATCCACCACCAACGAGAGACGTACAGATCTGATC
TTTCCAAGAAGGTCTTCGTACCTCCAGGAACTATGAACAACATACACATC
ACAGTCAGTATGGTAAGTTAGCATATATTCAATATTCATCAATCTTACAG
AACCTTTAGAATCTCCAGTCCCATTTTTAGCCAAAGCACACTACCGGAGG
ATTAATATACAGCAATGAAAGAAGATCATGGATGAATTTCTGCAAAAGTC
TTTTATTCTTTCCTTTTCTCTACCTACTCTGATCAATCTGCAATGGTCTC
AAATTGAACTAGATTTCGACTAGCCTAATCAAGCTGGATTCAAGCGAGAA
AAATTCCCAAAGAGTGAAAATTTAAAGTGAAAGTTTCATAAGAAAAGAAT
AAAGAATACATTTTCTAGTACGGGAAAGTGGTAAAATNATTCCCAAAGAG
TGAAAATTTAAAATGAAAGTTTCGTAAGAAAAGAATAAAGAATACATTTC
CTAGCACGGGAAAGTGGTAAAGGGAACCTGATGAACTAATTAATCGACAA
TAAAAAGATTATTTAAATAAAAACAATATATTTTTCTTCATTCCCAGTTA
GAATCACTGCCACCTCCTTACTCAACGAAATGCGGTTCAAAAAAATATGA
AGTGATTGATCCAAATTTCGCTTACTCAGCAAATTTGTGTGCAGTTGATT
GTATCTCAAAGATTTATTCAGAAGAATGCGGCTGTCTGACATCAGATCTG
AAAAAGTTTCAAGGTAAATAAAATATACCCCCTTTAAAACCGTTGCCGCA
ACAAAAGAAGGAAATATGAAAATAGTGATATCTAATCACCGCGCACACAG
CATATCTTAAAGATTTGCAATTTTCGATATTCTGGTTATTCTGTCGCTCT
CTAAAATAGCAAAAACATTTTTTCACGAATCAATAATGGCACTACTTTCA
ATATTTCAGATAATATACCGGAATGCAGTATGGAGCAATATGATTGTTAT
GTTAGAGGTAATTAGAATTTTTGATCCCTATGGGAAGAGAGGAGTCAAAA
GCTAGGTTAAACATAACTGACTGAATCAGACTAGTCTATTCATGTGTATT
ACATTTACCGTTTGCCTTTGCGATTATCTAGTAAACTTAACCACGCAAAT
ACATTCCCAATGAAAAAGAAGTATTCGGAAGTTAAGCAGATGGAGCTCTC
CAAATGTTAGGTATACATACAAAACGAGTTGATCCTATGACCTTTCATAA
TACATTTATAAACCTTAGCAACACGTTCAACTTTTAAGGAGAGTAACAAA
AATACAAGGAAAATTTCTTTCGACAACGGTATCGAAAACACGTGTGTAGG
AGCGCATTTGTGGAAATGTAAGATACCCTTGCATTGAGATGATAAAGTAA
CGTCAACAATCTAGTTTTAAAGCGATTCTAATGCTTAAAATAGTTTGCAC
TCCACCTAAGAGAATTAGTGAAATGTCTCTCGTATGAAATGGCGAGAATT
CGCTTAAATGCATTTCACTTAGTGACGGGGGAGAAGGACTATTTTTTTGT
CAGCAGTGTGTCGTTTTATTTGTTCGCTAGTGTACCGTGTAACCCATGTC
AAAAATAAATAAAATAAATAAAATTCCAAACCCCTCAAATGTCCACCGCA
CCGCTAAGGGTTGATAGGCGCTAGTTGAGTATTAGATATTTTTTCTTTAC
AGTGTACAACCACCTCCTTGATAACAGGACTTACAGAAAATGTTACCAGA
CCTGTCCGACACCTTGCACCATGGAAACTTTCTCACTACAAACCGGACAG
GCGAAGATTGGAACAAAGTTTTTATACAAAAGGTTATCTGAAATGAGGAA
CTTGACATTTCAAGAAAGTCAAGATTATATCAGGTATATATTATAACATG
ATATCGAGTTTTGGACTCATTTGTAGTTTTAATCTAACTCAAACGTTAAT
ATTCGGTTATTAATATTACCTCAGGGTTTTAGGGCACTTCAATCGTTAGA
AAAGTTGTTGTCTTGAAAAATAGGTAAACAAATTTGGTATGTGGAAGAGT
TAACATACTGTAAGTGAAGACTCTAGATCCATGAAGGGAATTATCCCTTT
GTTATACCATAATCATGGAAGAAAGAGTCTTCCTCGTATGACTATAGAGC
ATGATCATACATAAACATCTAGGGATTATCTAATTAATAAAGTCTTCCAT
CTATCTCTTTACATCTTCAGCCATAATGTTGTAGGTCTGAATATCGCTTT
CGCAGATGTGATTTATACAAAAGAAAAATTAACGCCATCCGTAGATTGGA
AAGTGTTGTTAGGTGAGAAATTTTATCGTCCAAAATATGCACAATAGAGT
AAGAATTTTAAGTCCCTTTGTAGAGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGTAGGAGCGCATTTGTGGAAATGTAAGATACCCTT
GCATTGAAATGATAAAGTAACGTCAACAATCTAGTTTTAAAGCGATTCTA
ATGCTTAAAATAGTTTGCACTCCACCTAAGAGAATTAGTGAAATGTCTAT
AGTATGAAATGGCGAGAATTCGCTTAAATGCATTTCACTTAGTGACGGGG
GAGAAGGACTATTTTTTTGTCAGCAGTGTGTCGTTTTATTTGTTCGCTAG
TGTACCGTGTAACCCATGTCAAAAAGAAATAAAATAAAATAAAATTCCAA
ACCCCTCAAATGTCAACCGCACCGCTAAGGGTTGATAGGCGCTAGTTGAG
TATTAGATATTTTTTCTTTACAGTGTACAACCACCTCCTTGATAACAGGA
CTTACAGAAAATGTTACCAGACCTGTCCGACACCTTGCACCATGGAAACT
TTCTCACTACAAACCGGACAGGCGAAGATTGGAACAAAGTTTTTATACAA
AAGGTTATCTGAAATGAGGAACTTGACATTTCAAGAAAGTCAAGATTATA
TCAGGTATATATTATAACATGATATCGAGTTTTGGACTCATTTGTAGTTT
TAATCTAACTCAAACGTTAATATTCGGTTATTAATATTACCTCAGGGTTT
TAGGGCACTTCAATCGTTAGAAAAGTTGTTGTCTTGAAAAATAGGTAAAC
AAATTTGGTATGTGGAAGAGTTAACATACTGTAAGTGAAGACTCTAGATC
CATGAAGGGAATTATCCCTTTGTTATACCATAATCATGGAAGAAAGAGTC
TTCCTCGTATGACTATAGAGCATGATCATACATAAACATCTAGGGATTAT
CTAATTAATAAAGTCTTCCATCTATCTCTTTACATCTTCAGCCATAATGT
TGTAGGTCTGAATATCGCTTTCGCAGATGTGATTTATACAAAAGAAAAAT
TAACGCCATCCGTAGATTGGAAAGTGTTGTTAGGTGAGAAATTTTATCGT
CCAAAATATGCACAATAGAGTAAGAATTTTAAGTCCCTTTGTAGAGAATT
CACGTCAGTACACGGCAGTTGAAAGCTTGAGGCGATCAATAAATGTACAC
ACTTCTTGACCAGAAAATTAAAACATAAAATAATTCCAGCCTGATCTTCT
TTTTAAAATAGCATGTTATAGTTTTGAAAATCCCTAACAATAATGCTTCA
ACAAGGTAGAAATATAAAAATATTGATACCTCTAATTCTTTGACAAGAAA
TGTGCTGACCATGCAATTTTTCATTCAACTTTCAGCAACAATTGGTGGAA
GCTTGGGCTTGTGTCTCGGATGCAGTCTAATTACCATAATCGAGTTCATT
GTTTTTTGCCTCACTTACCTTCCATTCAACAAACGAAAAACTCAACCAAG
TACCAAATGAATCGAGACAAATAAATGACGTCACTCACAGTATTTACCTC
AGATAAGAACCGTCATCCAGACCCAATTTTTCGTTCATGGAATTTCATAA
GTTTTTAAAGAAGATACAAGTAGCGTTCTTATGATTACTCAGCATTCCGT
TACCAAAAGGTATTCTTCAATTGCTCAATAGTAGAGACAAATCAAAACAG
TCTGATGTAATTGGGGGTGATAACACA

Coding sequence (CDS) from alignment at sc0000078:154062..159588-

>TCONS_00007605 ID=TCONS_00007605|Name=TCONS_00007605|organism=Clytia hemisphaerica|type=CDS|length=1479bp|location=Sequence derived from alignment at sc0000078:154062..159588- (Clytia hemisphaerica)
ATGGTGCAAGAGATATTACTGCAAAACAGAGGACTAAAAATGACGAAAGA
AGAGAGTTTAGATGGCGAGACAATGACGTTATCTGAAAAATGGAAAGAAT
TTTGCGATGAGACGACCATCCATGGTTTCCGAGCAGCTTTTTTTTCAAGG
AATACCTGTCTGAAAGTTTTCTGGAGAATCTTGCTTATTCTGGCAACTCT
ACTGGCGGGGTTCCTCTTCTATGGCGTATTGATGCAATATTTGAAATACG
AATTCAAAGTCTCCAAAGAAATAGATTTTAATATGGATGAAGTCAATTTC
CCAAGGGTGACCATCTGTAACATAAATTCATTATCTCAGAAGAAAATCAA
CGAGCTTGGTTACCAAGGAGACGTGGATGAACTGATAGACTTCTACCACC
AAATGCGTGGAAAGACTTTGAATGTATCCTCACCGGACACGAAGCGCATT
TTAAATTACTTTTACGCTAAGAATCTGAATAAAACGCATGACATAATATC
AGCTTTTGAGCTTGGTAAAAGAGAAATGTTAGATGATCCGTTCATGAGAA
GAGTATTTCCCTTTTCGTGCAAATACGAAAACAAGCCATGCAGCGTGGAT
AATTTCACTGAGATCTTCTCTTTCTCATACGGAAAATGTATTGCTTTTCC
CAAAAATAAAAAAGATGTTTTGAAAGGGAAATTTTCGGGGCCTGGGCTCC
AGTTGACGTTAAACATCCACGAGGAGGATATGTTGGACAGTCGAGCCACT
TTCAACGGTTTGGCCGTGTTCATCCACCACCAACGAGAGACGTACAGATC
TGATCTTTCCAAGAAGGTCTTCGTACCTCCAGGAACTATGAACAACATAC
ACATCACAGTCAGTATGTTAGAATCACTGCCACCTCCTTACTCAACGAAA
TGCGGTTCAAAAAAATATGAAGTGATTGATCCAAATTTCGCTTACTCAGC
AAATTTGTGTGCAGTTGATTGTATCTCAAAGATTTATTCAGAAGAATGCG
GCTGTCTGACATCAGATCTGAAAAAGTTTCAAGATAATATACCGGAATGC
AGTATGGAGCAATATGATTGTTATGTTAGAGTGTACAACCACCTCCTTGA
TAACAGGACTTACAGAAAATGTTACCAGACCTGTCCGACACCTTGCACCA
TGGAAACTTTCTCACTACAAACCGGACAGGCGAAGATTGGAACAAAGTTT
TTATACAAAAGGTTATCTGAAATGAGGAACTTGACATTTCAAGAAAGTCA
AGATTATATCAGCCATAATGTTGTAGGTCTGAATATCGCTTTCGCAGATG
TGATTTATACAAAAGAAAAATTAACGCCATCCGTAGATTGGAAAGTGTTG
TTAGCAACAATTGGTGGAAGCTTGGGCTTGTGTCTCGGATGCAGTCTAAT
TACCATAATCGAGTTCATTGTTTTTTGCCTCACTTACCTTCCATTCAACA
AACGAAAAACTCAACCAAGTACCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004292XLOC_004292Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007605-proteinTCONS_00007605-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007605-exon-sc0000078-1575043694:158577..159588TCONS_00007605-exon-sc0000078-1575043694:158577..159588Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1575043694:157926..158091TCONS_00007605-exon-sc0000078-1575043694:157926..158091Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1575043694:157682..157729TCONS_00007605-exon-sc0000078-1575043694:157682..157729Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1575043694:155135..155315TCONS_00007605-exon-sc0000078-1575043694:155135..155315Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1575043694:154706..154797TCONS_00007605-exon-sc0000078-1575043694:154706..154797Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1575043694:154062..154403TCONS_00007605-exon-sc0000078-1575043694:154062..154403Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1510915933:158577..159588TCONS_00007605-exon-sc0000078-1510915933:158577..159588Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1510915933:157926..158091TCONS_00007605-exon-sc0000078-1510915933:157926..158091Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1510915933:157682..157729TCONS_00007605-exon-sc0000078-1510915933:157682..157729Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1510915933:155135..155315TCONS_00007605-exon-sc0000078-1510915933:155135..155315Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1510915933:154706..154797TCONS_00007605-exon-sc0000078-1510915933:154706..154797Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1510915933:154062..154403TCONS_00007605-exon-sc0000078-1510915933:154062..154403Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1491911889:158577..159588TCONS_00007605-exon-sc0000078-1491911889:158577..159588Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1491911889:157926..158091TCONS_00007605-exon-sc0000078-1491911889:157926..158091Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1491911889:157682..157729TCONS_00007605-exon-sc0000078-1491911889:157682..157729Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1491911889:155135..155315TCONS_00007605-exon-sc0000078-1491911889:155135..155315Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1491911889:154706..154797TCONS_00007605-exon-sc0000078-1491911889:154706..154797Clytia hemisphaericaexon
TCONS_00007605-exon-sc0000078-1491911889:154062..154403TCONS_00007605-exon-sc0000078-1491911889:154062..154403Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:154062..159588 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0776053	0	0.0878119	0	0	0.0526362	0	0.0845699	0.0417462	0.0266153	0	0.0532009	2.04458	1.28042	0.100247	0.162861	0.0359074	0.0750406	4.86768	5.58672	0.0512376	0	0.119238	0.054319	0.131283	0	0	0	0	0.0294223
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
[Close]
BLAST of TCONS_00007605 vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.784e-21
Identity = 111/424 (26.18%), Postives = 183/424 (43.16%), Query Frame = 2 
Query:  245 FCDETTIHGFRAAF-FSRNTCLKVFWRXXXXXXXXXXXXXXYGVLMQYLKYEFKVSKEIDFNMDEVNFPRVTICNINSL--SQKKINELGYQGDVDELIDFYHQMRGKTLNVSSPDTKRILNYFYAKNLNKTHDIISAFELGKREMLDDPFMRRV------FPFSCKYENKPCSVDNFTEIFSFSYGKCIAFPKNKKD-----VLKGKFSGPGLQLTLNIHEEDML-----DSRATFN-GLAVFIHHQRET-YRSDLSKKVFVPPGTMNNIHITVSMLESLPPPYSTKCGSKKYEVIDPNFAYSANLCAVDCISKIYSEECGCLTSDLKKFQDNIPECSMEQYDCYVRVYNHLLDNRTYRKCYQTCPTPCTMETFSLQTGQAKIGTKFLYKRLSEMRNLTFQESQDYISHNVVGLNIAFADVIY 1453
            F + +T+HG R  F +   T  +V W +  + +  L        +  Y  Y+  V+K  +     + FP VT+CN+N    S+   N+L + G++  L+D   Q+    L  + P     L     +  N  H     ++  +  ML+  F+ RV          CK++ + C   +FT +F+  YGKC  F   +        +KG  +G GL++ L+I +++ L         TF  G+ V IH Q E  +  +L     V PG    +      L  LPPP+  +C S +   +D    YS   C +DC ++   E C C    +     + P C+ EQ+         LL  +    C   C TPC +  ++ +    KI +K   K L +     F +S+ YIS N++ L+I F  + Y
Sbjct:   20 FANTSTLHGIRHIFVYGPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQ-HVTKVDEVVAQSLVFPAVTLCNLNGFRFSRLTTNDLYHAGELLALLDVNLQIPDPHL--ADPSVLEALR----QKANFKH-----YKPKQFSMLE--FLHRVGHDLKDMMLYCKFKGQECGHQDFTTVFT-KYGKCYMFNSGEDGKPLLTTVKGG-TGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELG--FGVAPGFQTFVATQEQRLTYLPPPWG-ECRSSEMG-LDFFPVYSITACRIDCETRYIVENCNC---RMVHMPGDAPFCTPEQHKECAEPALGLLAEKDSNYCL--CRTPCNLTRYNKELSMVKIPSKTSAKYLEK----KFNKSEKYISENILVLDIFFEALNY 414
The following BLAST results are available for this feature:
BLAST of TCONS_00007605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ASIC26.784e-2126.18Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC... [more]
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