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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007606 ID=TCONS_00007606|Name=TCONS_00007606|organism=Clytia hemisphaerica|type=transcript|length=1362bp
AATAAATCGTAGGAGAAAAGGAGGGAAAGATTTcaaacaaagaaccaaaa
agaaGAAATCTTGGTCATAAAATCAGAAATAAAATCCACTGTGCAGTAGT
AGCACGGAACGGAGCATGTAGGTTTTCAATACAAAATGGTGCAAGAGATA
TTACTGCAAAACAGAGGACTAAAAATGACGAAAGAAGAGAGTTTAGATGG
CGAGACAATGACGTTATCTGAAAAATGGAAAGAATTTTGCGATGAGACGA
CCATCCATGGTTTCCGAGCAGCTTTTTTTTCAAGGAATACCTGTCTGAAA
GTTTTCTGGAGAATCTTGCTTATTCTGGCAACTCTACTGGCGGGGTTCCT
CTTCTATGGCGTATTGATGCAATATTTGAAATACGAATTCAAAGTCTCCA
AAGAAATAGATTTTAATATGGATGAAGTCAATTTCCCAAGGGTGACCATC
TGTAACATAAATTCATTATCTCAGAAGAAAATCAACGAGCTTGGTTACCA
AGGAGACGTGGATGAACTGATAGACTTCTACCACCAAATGCGTGGAAAGA
CTTTGAATGTATCCTCACCGGACACGAAGCGCATTTTAAATTACTTTTAC
GCTAAGAATCTGAATAAAACGCATGACATAATATCAGCTTTTGAGCTTGG
TAAAAGAGAAATGTTAGATGATCCGTTCATGAGAAGAGTATTTCCCTTTT
CGTGCAAATACGAAAACAAGCCATGCAGCGTGGATAATTTCACTGAGATC
TTCTCTTTCTCATACGGAAAATGTATTGCTTttcccaaaaataaaaaaga
tgttttgAAAGGGAAATTTTCGGGGCCTGGGCTCCAGTTGACGTTAAACA
TCCACGAGGAGGATATGTTGGACAGTCGAGCCACTTTCAACGGTTTGGCC
GTGTTCATCCACCACCAACGAGAGACGTACAGATCTGATCTTTCCAAGAA
GGTCTTCGTACCTCCAGGAACTATGAACAACATACACATCACAGTCAGTA
TGTTAGAATCACTGCCACCTCCTTACTCAACGAAATGCGGTTCAAAAAAA
TATGAAGTGATTGATCCAAATTTCGCTTACTCAGCAAATTTGTGTGCAGT
TGATTGTATCTCAAAGATTTATTCAGAAGAATGCGGCTGTCTGACATCAG
ATctgaaaaagtttcaagATAATATACCGGAATGCAGTATGGAGCAATAT
GATTGTTATGTTAGAGtGTACAACCACCTCCTTGATAACAGGACTTACAG
AAAATGTTACCAGACCTGTCCGACACCTTGCACCATGGAAACTTTCTCAC
TACAAACCGGACAGGCGAAGATTGGAAcaaagtttttatacaaaagGTTA
TCTGAAATGAGG Run BLAST on NCBI transcript from alignment at sc0000078:156841..159578- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007606 ID=TCONS_00007606|Name=TCONS_00007606|organism=Clytia hemisphaerica|type=transcript|length=2738bp|location=Sequence derived from alignment at sc0000078:156841..159578- (Clytia hemisphaerica)
AATAAATCGTAGGAGAAAAGGAGGGAAAGATTTCAAACAAAGAACCAAAA
AGAAGAAATCTTGGTCATAAAATCAGAAATAAAATCCACTGTGCAGTAGT
AGCACGGAACGGAGCATGTAGGTTTTCAATACAAAATGGTGCAAGAGATA
TTACTGCAAAACAGAGGACTAAAAATGACGAAAGAAGAGAGTTTAGATGG
CGAGACAATGACGTTATCTGAAAAATGGAAAGAATTTTGCGATGAGACGA
CCATCCATGGTTTCCGAGCAGCTTTTTTTTCAAGGAATACCTGTCTGAAA
GTTTTCTGGAGAATCTTGCTTATTCTGGCAACTCTACTGGCGGGGTTCCT
CTTCTATGGCGTATTGATGCAATATTTGAAATACGAATTCAAAGTCTCCA
AAGAAATAGATTTTAATATGGATGAAGTCAATTTCCCAAGGGTGACCATC
TGTAACATAAATTCATTATCTCAGAAGAAAATCAACGAGCTTGGTTACCA
AGGAGACGTGGATGAACTGATAGACTTCTACCACCAAATGCGTGGAAAGA
CTTTGAATGTATCCTCACCGGACACGAAGCGCATTTTAAATTACTTTTAC
GCTAAGAATCTGAATAAAACGCATGACATAATATCAGCTTTTGAGCTTGG
TAAAAGAGAAATGTTAGATGATCCGTTCATGAGAAGAGTATTTCCCTTTT
CGTGCAAATACGAAAACAAGCCATGCAGCGTGGATAATTTCACTGAGATC
TTCTCTTTCTCATACGGAAAATGTATTGCTTTTCCCAAAAATAAAAAAGA
TGTTTTGAAAGGGAAATTTTCGGGGCCTGGGCTCCAGTTGACGTTAAACA
TCCACGAGGAGGATATGTTGGACAGTCGAGCCACTTTCAACGGTTTGGCC
GTGTTCATCCACCACCAACGAGAGACGTACAGATCTGATCTTTCCAAGAA
GGTCTTCGTACCTCCAGGAACTATGAACAACATACACATCACAGTCAGTA
TGGTAAGTTAGCATATATTCAATATTCATCAATCTTACAGAACCTTTAGA
ATCTCCAGTCCCATTTTTAGCCAAAGCACACTACCGGAGGATTAATATAC
AGCAATGAAAGAAGATCATGGATGAATTTCTGCAAAAGTCTTTTATTCTT
TCCTTTTCTCTACCTACTCTGATCAATCTGCAATGGTCTCAAATTGAACT
AGATTTCGACTAGCCTAATCAAGCTGGATTCAAGCGAGAAAAATTCCCAA
AGAGTGAAAATTTAAAGTGAAAGTTTCATAAGAAAAGAATAAAGAATACA
TTTTCTAGTACGGGAAAGTGGTAAAATNATTCCCAAAGAGTGAAAATTTA
AAATGAAAGTTTCGTAAGAAAAGAATAAAGAATACATTTCCTAGCACGGG
AAAGTGGTAAAGGGAACCTGATGAACTAATTAATCGACAATAAAAAGATT
ATTTAAATAAAAACAATATATTTTTCTTCATTCCCAGTTAGAATCACTGC
CACCTCCTTACTCAACGAAATGCGGTTCAAAAAAATATGAAGTGATTGAT
CCAAATTTCGCTTACTCAGCAAATTTGTGTGCAGTTGATTGTATCTCAAA
GATTTATTCAGAAGAATGCGGCTGTCTGACATCAGATCTGAAAAAGTTTC
AAGGTAAATAAAATATACCCCCTTTAAAACCGTTGCCGCAACAAAAGAAG
GAAATATGAAAATAGTGATATCTAATCACCGCGCACACAGCATATCTTAA
AGATTTGCAATTTTCGATATTCTGGTTATTCTGTCGCTCTCTAAAATAGC
AAAAACATTTTTTCACGAATCAATAATGGCACTACTTTCAATATTTCAGA
TAATATACCGGAATGCAGTATGGAGCAATATGATTGTTATGTTAGAGGTA
ATTAGAATTTTTGATCCCTATGGGAAGAGAGGAGTCAAAAGCTAGGTTAA
ACATAACTGACTGAATCAGACTAGTCTATTCATGTGTATTACATTTACCG
TTTGCCTTTGCGATTATCTAGTAAACTTAACCACGCAAATACATTCCCAA
TGAAAAAGAAGTATTCGGAAGTTAAGCAGATGGAGCTCTCCAAATGTTAG
GTATACATACAAAACGAGTTGATCCTATGACCTTTCATAATACATTTATA
AACCTTAGCAACACGTTCAACTTTTAAGGAGAGTAACAAAAATACAAGGA
AAATTTCTTTCGACAACGGTATCGAAAACACGTGTGTAGGAGCGCATTTG
TGGAAATGTAAGATACCCTTGCATTGAGATGATAAAGTAACGTCAACAAT
CTAGTTTTAAAGCGATTCTAATGCTTAAAATAGTTTGCACTCCACCTAAG
AGAATTAGTGAAATGTCTCTCGTATGAAATGGCGAGAATTCGCTTAAATG
CATTTCACTTAGTGACGGGGGAGAAGGACTATTTTTTTGTCAGCAGTGTG
TCGTTTTATTTGTTCGCTAGTGTACCGTGTAACCCATGTCAAAAATAAAT
AAAATAAATAAAATTCCAAACCCCTCAAATGTCCACCGCACCGCTAAGGG
TTGATAGGCGCTAGTTGAGTATTAGATATTTTTTCTTTACAGTGTACAAC
CACCTCCTTGATAACAGGACTTACAGAAAATGTTACCAGACCTGTCCGAC
ACCTTGCACCATGGAAACTTTCTCACTACAAACCGGACAGGCGAAGATTG
GAACAAAGTTTTTATACAAAAGGTTATCTGAAATGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007606-exon-sc0000078-1575043694:158577..159578 | TCONS_00007606-exon-sc0000078-1575043694:158577..159578 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1575043694:157926..158091 | TCONS_00007606-exon-sc0000078-1575043694:157926..158091 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1575043694:157682..157729 | TCONS_00007606-exon-sc0000078-1575043694:157682..157729 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1575043694:156841..156986 | TCONS_00007606-exon-sc0000078-1575043694:156841..156986 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1510915933:158577..159578 | TCONS_00007606-exon-sc0000078-1510915933:158577..159578 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1510915933:157926..158091 | TCONS_00007606-exon-sc0000078-1510915933:157926..158091 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1510915933:157682..157729 | TCONS_00007606-exon-sc0000078-1510915933:157682..157729 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1510915933:156841..156986 | TCONS_00007606-exon-sc0000078-1510915933:156841..156986 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1491911889:158577..159578 | TCONS_00007606-exon-sc0000078-1491911889:158577..159578 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1491911889:157926..158091 | TCONS_00007606-exon-sc0000078-1491911889:157926..158091 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1491911889:157682..157729 | TCONS_00007606-exon-sc0000078-1491911889:157682..157729 | Clytia hemisphaerica | exon |
| TCONS_00007606-exon-sc0000078-1491911889:156841..156986 | TCONS_00007606-exon-sc0000078-1491911889:156841..156986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:156841..159578 - |
Blast
BLAST of TCONS_00007606 vs. Swiss-Prot (Human)
Match: ASIC2 (Acid-sensing ion channel 2 OS=Homo sapiens GN=ASIC2 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.144e-17 Identity = 101/393 (25.70%), Postives = 166/393 (42.24%), Query Frame = 1
Query: 235 FCDETTIHGFRAAF-FSRNTCLKVFWRXXXXXXXXXXXXXXYGVLMQYLKYEFKVSKEIDFNMDEVNFPRVTICNINSL--SQKKINELGYQGDVDELIDFYHQMRGKTLNVSSPDTKRILNYFYAKNLNKTHDIISAFELGKREMLDDPFMRRV------FPFSCKYENKPCSVDNFTEIFSFSYGKCIAFPKNKKD-----VLKGKFSGPGLQLTLNIHEEDML-----DSRATFN-GLAVFIHHQRET-YRSDLSKKVFVPPGTMNNIHITVSMLESLPPPYSTKCGSKKYEVIDPNFAYSANLCAVDCISKIYSEECGCLTSDLKKFQDNIPECSMEQYDCYVRVYNHLLDNRTYRKCYQTCPTPCTMETFSLQTGQAKIGTKFLYKRL 1350
F + +T+HG R F + T +V W + + + L + Y Y+ V+K + + FP VT+CN+N S+ N+L + G++ L+D Q+ L + P L + N H ++ + ML+ F+ RV CK++ + C +FT +F+ YGKC F + +KG +G GL++ L+I +++ L TF G+ V IH Q E + +L V PG + L LPPP+ +C S + +D YS C +DC ++ E C C + + P C+ EQ+ LL + C C TPC + ++ + KI +K K L
Sbjct: 20 FANTSTLHGIRHIFVYGPLTIRRVLWAVAFVGSLGLLLVESSERVSYYFSYQ-HVTKVDEVVAQSLVFPAVTLCNLNGFRFSRLTTNDLYHAGELLALLDVNLQIPDPHL--ADPSVLEALR----QKANFKH-----YKPKQFSMLE--FLHRVGHDLKDMMLYCKFKGQECGHQDFTTVFT-KYGKCYMFNSGEDGKPLLTTVKGG-TGNGLEIMLDIQQDEYLPIWGETEETTFEAGVKVQIHSQSEPPFIQELG--FGVAPGFQTFVATQEQRLTYLPPPWG-ECRSSEMG-LDFFPVYSITACRIDCETRYIVENCNC---RMVHMPGDAPFCTPEQHKECAEPALGLLAEKDSNYCL--CRTPCNLTRYNKELSMVKIPSKTSAKYL 387
The following BLAST results are available for this feature:
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