TCONS_00007608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007608
Unique NameTCONS_00007608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007608 ID=TCONS_00007608|Name=TCONS_00007608|organism=Clytia hemisphaerica|type=transcript|length=607bp
TTGTGACTGAGTCAATCTAGttagatttctaaaaaaaaattaatttcaag
aaTGAGGCTCAGGTTGTACTTACTTTGACTAGATCATAATCGACTAATTC
CTCATGATGCTTGAACCTGGAAAATTTCTGCGTGAGAACGACATTGAAAT
CAAATTCATCCGCTACgataatttttgtttgcgtTGAGGTGCTTCCAGCA
GCTTGGATCTTTTTAGAGTACAAGTCTCCGTTAGGCTGTTCAGTAACGTC
CTCCATAATCTTTCCAAGCAAACCTTGAACAAGTTTTCTAGCTTTTCGAC
GGTCTGTCCGCGTTACAATAACTTTCTCCTTGTAGAAAGCTTCTTGGAGG
TACAATTGCAATTTTTCATCGCGGGTTTCAGGATCCACTGGTGGTGACCT
GTGAATCACAGCATCACAATGTTGTTCCAGTTGGCGCAATGAACTGAACT
CTTCTGCGCATGTCAAACATGGATAGAAGAGATATTCTTTCAAATGTTGG
TCAAGTGATTGTTGATTGTAATACACTTGGTGACAATAAGGACATGAAAA
ACCCATTTCAAAATtttttaatgtaaatatatattttgttgACTTCACTT
CTTTACT
Run BLAST on NCBI

transcript from alignment at sc0000078:173461..174230-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007608 ID=TCONS_00007608|Name=TCONS_00007608|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0000078:173461..174230- (Clytia hemisphaerica)
TTGTGACTGAGTCAATCTAGTTAGATTTCTAAAAAAAAATTAATTTCAAG
AATGAGGCTCAGGTTGTACTTACTTTGACTAGATCATAATCGACTAATTC
CTCATGATGCTTGAACCTGGAAAATTTCTGCGTGAGAACGACATTGAAAT
CAAATTCATCCGCTACGATAATTTTTGTTTGCGTTGAGGTGCTTCCAGCA
GCTTGGATCTTTTTAGAGTACAAGTCTCCGTTAGGCTGTTCAGTAACGTC
CTCCATAATCTTTCCAAGCAAACCTTGAACAAGTTTTCTAGCTTTTCGAC
GGTCTGTCCGCGTTACAATAACTTTCTCCTTGTAGAAAGCTTCTTGGAGG
TACAATTGCAATTTTTCATCGCGGGTTTCAGGATCCACTGGTGGTGACCT
GTGAATCACAGCATCACAATGTTGTTCCAGTTGGCGCAATGAACTGAACT
CTTCTGCGCATGTCAAACATGGATAGAAGAGATATTCTTTCAAATGTTGG
TCAAGTGATTGTTGATTGTAATACACTTGGTGACAATAAGGACATGAAAA
ACCCATTTCAAAATATGCTGAAAGAGAAATAAAAGACAATACCGTCATCA
AAATATCAACGGTAAAGATAGTTCCAAGATAACACAAGCAGATGAAATTT
CAAGTAAATCCACTACACGTAAATCCACGCAAACCACTTCAAATATCACA
TAAAAAATTCGAAAATTCAAAACTTACTTTTTAATGTAAATATATATTTT
GTTGACTTCACTTCTTTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004294XLOC_004294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007608-exon-sc0000078-1575043694:173667..174230TCONS_00007608-exon-sc0000078-1575043694:173667..174230Clytia hemisphaericaexon
TCONS_00007608-exon-sc0000078-1575043694:173461..173503TCONS_00007608-exon-sc0000078-1575043694:173461..173503Clytia hemisphaericaexon
TCONS_00007608-exon-sc0000078-1510915933:173667..174230TCONS_00007608-exon-sc0000078-1510915933:173667..174230Clytia hemisphaericaexon
TCONS_00007608-exon-sc0000078-1510915933:173461..173503TCONS_00007608-exon-sc0000078-1510915933:173461..173503Clytia hemisphaericaexon
TCONS_00007608-exon-sc0000078-1491911889:173667..174230TCONS_00007608-exon-sc0000078-1491911889:173667..174230Clytia hemisphaericaexon
TCONS_00007608-exon-sc0000078-1491911889:173461..173503TCONS_00007608-exon-sc0000078-1491911889:173461..173503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:173461..174230 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181725	0.243	0	0.0671009	0	0.325358	0.389209	1.92795	0	10.9319	0.697909	2.79632	9.6737	8.52668	4.44142	5.7925	2.63946	1.8985	6.63166	8.06283	1.51266	0.510283	0.721409	2.92271	0	0	4.06338	5.15323	0.386803	0.817749
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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