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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007610 ID=TCONS_00007610|Name=TCONS_00007610|organism=Clytia hemisphaerica|type=transcript|length=1257bp
TGTCTCGAACGGGACACTTTGTAAGGTGTGATATCAGTAGTAGGCTAAAA
GTTGGCATTAAAACAGCAACAGAAGTTAGAAGATTGTATTGAGAGCAGTT
TTCTAAGGAATACTagaatctaattaaaaaatcaaaagaattgaCAAGCT
TCCTAACTGTGTAAAACTTTGGAAATTGCTAATAGAGGGATGTCGAATGA
GAGCAGGTGTTGTCATTTGAAACATTCGGTTACGTACCTTTTGCTTGGCT
CTATCATTGTGTTTGTGTTAATGGCGGCGTGTTGTGGAGGTGATCACTGG
CTCCAAGAGGCCGACGAGTCGAATTATGGTCTGTGGAGGGAATGCAAGCA
AGCCATCGGTGCTTTTATGAAAACGTGCGTCGACCGTGACGCAGGATTGG
GTGATCACGCTTTACGATCACAGCGTGCGCTGACCATAATTTCTAGCGCA
GCCGCTGCTTTGGCATCCATTCTGGGTTTCTTGTGTCGGTTCACGTCATA
CATTAAACCTCCCTTCGTTTCATTGTTGCTAGTGACGGCATCTATTACGA
CAGGTGTCGCTGTCGGCTTGTTTACGTACAACAAACACGAAGAAACAACA
CGAGATTTGTCGCCGTCAAAATTCGCCTGGTCCTGGTATCTAGGTTGGAT
TGGAGTCGGTCTCGGTTTTATCACTGCCTTATTTGGAATTTGTTGTGGAC
CAATCAGAGAAAAGGCAACCATCAATAAAAAGTCGACAACGACAGCGAGA
AGGGTTGATAGGGAAGTGACTTTTGCGGAACCGCCAACCACTGCTCATAA
TGACATTGCCATGGAAACCAAAGAACAACCAAATCTTTCTGAATATGTTT
GATGTCTTTTTATAAAGTGACTTGTAGTGATGTTTATTGATTTaggataa
ttttcttttttgattctATTAAATAACTCCATTATATACGAGATCaataa
tttgtatttttataCGAGTCTGGACGTGATTGAGCTATATTTTCCAATAA
AAAAACCGATAATTATCGGTATAACTTGCCCGAAAATCATTTCTAGTTTT
TTCTATCATAATATTTGTTATTTAAAGTTCGTGAAgcattttccttgaaa
ttttaGATACGGTTACGCAAAAACGTCAACTAACAAGCAGCTTTAAACGT
AAGATGTCGGAACGTTGGGAGGAGGGTTCATATCATAAGTTCCATTTCTC
GAATCTAAAATATTTTGTGGTAAATGGTCCTCTATGTGGTCAAATCTTAC
AACGTTT Run BLAST on NCBI protein sequence of TCONS_00007610-protein >TCONS_00007610-protein ID=TCONS_00007610-protein|Name=TCONS_00007610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
MSNESRCCHLKHSVTYLLLGSIIVFVLMAACCGGDHWLQEADESNYGLWR
ECKQAIGAFMKTCVDRDAGLGDHALRSQRALTIISSAAAALASILGFLCR
FTSYIKPPFVSLLLVTASITTGVAVGLFTYNKHEETTRDLSPSKFAWSWY
LGWIGVGLGFITALFGICCGPIREKATINKKSTTTARRVDREVTFAEPPT
TAHNDIAMETKEQPNLSEYV Run BLAST on NCBI transcript from alignment at sc0000078:264860..266178- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007610 ID=TCONS_00007610|Name=TCONS_00007610|organism=Clytia hemisphaerica|type=transcript|length=1319bp|location=Sequence derived from alignment at sc0000078:264860..266178- (Clytia hemisphaerica)
TGTCTCGAACGGGACACTTTGTAAGGTGTGATATCAGTAGTAGGCTNCAA
ATGTATAAAACAAATTTCTTGTCTCGAACGGGACACTTTGTGATATCAGT
AGTAGGCTAAAAGTTGGCATTAAAACAGCAACAGAAGTTAGAAGATTGTA
TTGAGAGCAGTTTTCTAAGGAATACTAGAATCTAATTAAAAAATCAAAAG
AATTGACAAGCTTCCTAACTGTGTAAAACTTTGGAAATTGCTAATAGAGG
GATGTCGAATGAGAGCAGGTGTTGTCATTTGAAACATTCGGTTACGTACC
TTTTGCTTGGCTCTATCATTGTGTTTGTGTTAATGGCGGCGTGTTGTGGA
GGTGATCACTGGCTCCAAGAGGCCGACGAGTCGAATTATGGTCTGTGGAG
GGAATGCAAGCAAGCCATCGGTGCTTTTATGAAAACGTGCGTCGACCGTG
ACGCAGGATTGGGTGATCACGCTTTACGATCACAGCGTGCGCTGACCATA
ATTTCTAGCGCAGCCGCTGCTTTGGCATCCATTCTGGGTTTCTTGTGTCG
GTTCACGTCATACATTAAACCTCCCTTCGTTTCATTGTTGCTAGTGACGG
CATCTATTACGACAGGTGTCGCTGTCGGCTTGTTTACGTACAACAAACAC
GAAGAAACAACACGAGATTTGTCGCCGTCAAAATTCGCCTGGTCCTGGTA
TCTAGGTTGGATTGGAGTCGGTCTCGGTTTTATCACTGCCTTATTTGGAA
TTTGTTGTGGACCAATCAGAGAAAAGGCAACCATCAATAAAAAGTCGACA
ACGACAGCGAGAAGGGTTGATAGGGAAGTGACTTTTGCGGAACCGCCAAC
CACTGCTCATAATGACATTGCCATGGAAACCAAAGAACAACCAAATCTTT
CTGAATATGTTTGATGTCTTTTTATAAAGTGACTTGTAGTGATGTTTATT
GATTTAGGATAATTTTCTTTTTTGATTCTATTAAATAACTCCATTATATA
CGAGATCAATAATTTGTATTTTTATACGAGTCTGGACGTGATTGAGCTAT
ATTTTCCAATAAAAAAACCGATAATTATCGGTATAACTTGCCCGAAAATC
ATTTCTAGTTTTTTCTATCATAATATTTGTTATTTAAAGTTCGTGAAGCA
TTTTCCTTGAAATTTTAGATACGGTTACGCAAAAACGTCAACTAACAAGC
AGCTTTAAACGTAAGATGTCGGAACGTTGGGAGGAGGGTTCATATCATAA
GTTCCATTTCTCGAATCTAAAATATTTTGTGGTAAATGGTCCTCTATGTG
GTCAAATCTTACAACGTTT Coding sequence (CDS) from alignment at sc0000078:264860..266178- >TCONS_00007610 ID=TCONS_00007610|Name=TCONS_00007610|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at sc0000078:264860..266178- (Clytia hemisphaerica)
ATGTCGAATGAGAGCAGGTGTTGTCATTTGAAACATTCGGTTACGTACCT
TTTGCTTGGCTCTATCATTGTGTTTGTGTTAATGGCGGCGTGTTGTGGAG
GTGATCACTGGCTCCAAGAGGCCGACGAGTCGAATTATGGTCTGTGGAGG
GAATGCAAGCAAGCCATCGGTGCTTTTATGAAAACGTGCGTCGACCGTGA
CGCAGGATTGGGTGATCACGCTTTACGATCACAGCGTGCGCTGACCATAA
TTTCTAGCGCAGCCGCTGCTTTGGCATCCATTCTGGGTTTCTTGTGTCGG
TTCACGTCATACATTAAACCTCCCTTCGTTTCATTGTTGCTAGTGACGGC
ATCTATTACGACAGGTGTCGCTGTCGGCTTGTTTACGTACAACAAACACG
AAGAAACAACACGAGATTTGTCGCCGTCAAAATTCGCCTGGTCCTGGTAT
CTAGGTTGGATTGGAGTCGGTCTCGGTTTTATCACTGCCTTATTTGGAAT
TTGTTGTGGACCAATCAGAGAAAAGGCAACCATCAATAAAAAGTCGACAA
CGACAGCGAGAAGGGTTGATAGGGAAGTGACTTTTGCGGAACCGCCAACC
ACTGCTCATAATGACATTGCCATGGAAACCAAAGAACAACCAAATCTTTC
TGAATATGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007610-exon-sc0000078-1575043694:266136..266178 | TCONS_00007610-exon-sc0000078-1575043694:266136..266178 | Clytia hemisphaerica | exon |
| TCONS_00007610-exon-sc0000078-1575043694:264860..266073 | TCONS_00007610-exon-sc0000078-1575043694:264860..266073 | Clytia hemisphaerica | exon |
| TCONS_00007610-exon-sc0000078-1510915933:266136..266178 | TCONS_00007610-exon-sc0000078-1510915933:266136..266178 | Clytia hemisphaerica | exon |
| TCONS_00007610-exon-sc0000078-1510915933:264860..266073 | TCONS_00007610-exon-sc0000078-1510915933:264860..266073 | Clytia hemisphaerica | exon |
| TCONS_00007610-exon-sc0000078-1491911889:266136..266178 | TCONS_00007610-exon-sc0000078-1491911889:266136..266178 | Clytia hemisphaerica | exon |
| TCONS_00007610-exon-sc0000078-1491911889:264860..266073 | TCONS_00007610-exon-sc0000078-1491911889:264860..266073 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:264860..266178 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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