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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007618 ID=TCONS_00007618|Name=TCONS_00007618|organism=Clytia hemisphaerica|type=transcript|length=1915bpRun BLAST on NCBI protein sequence of TCONS_00007618-protein >TCONS_00007618-protein ID=TCONS_00007618-protein|Name=TCONS_00007618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=494bp MSVARVGRALWRGVQQVIKAGPKSELTGIQKVQHQRQYFWENVAKTFPTERun BLAST on NCBI transcript from alignment at sc0000078:462513..469357- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007618 ID=TCONS_00007618|Name=TCONS_00007618|organism=Clytia hemisphaerica|type=transcript|length=6845bp|location=Sequence derived from alignment at sc0000078:462513..469357- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000078:462513..469357- >TCONS_00007618 ID=TCONS_00007618|Name=TCONS_00007618|organism=Clytia hemisphaerica|type=CDS|length=17820bp|location=Sequence derived from alignment at sc0000078:462513..469357- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007618 vs. Swiss-Prot (Human)
Match: PINK1 (Serine/threonine-protein kinase PINK1, mitochondrial OS=Homo sapiens GN=PINK1 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.710e-49 Identity = 116/302 (38.41%), Postives = 160/302 (52.98%), Query Frame = 3
Query: 528 VAVKMMFNVNTRSDSSVDHVIMKR---------FQREYQVLN-----SPNKDLPEHPNIIKMLKVFVDKTIQMEDSLQMYPYMMPKSLFPDGIGRSKTIYLVMPKYSNSLRGYLNENPNLPFKARQNMFCQLLEGVAHLENNNISHRDMKTDNIMIKASSTSDHVELVIIDFGSCYDGRDTNMRLPFQSDYVDRGGNPALMAPEILRAKPGMDVYLDYSKADAWAVGSIAYEIFGMKNPLYVKD---------------PLDKPIPPLRSGDIVTDFVVGKLLTVDCNERFTANDAANLLSL 1346
+A+KMM+N++ S S M + EY + K L HPNII++L+ F + +L YP ++P L P+G+G +T++LVM Y +LR YL N P + M QLLEGV HL I+HRD+K+DNI+++ LVI DFG C ++LPF S YVDRGGN LMAPE+ A+PG +DYSKADAWAVG+IAYEIFG+ NP Y + L + +PP D+ +V LL + ++R +A AAN+L L
Sbjct: 216 LAIKMMWNISAGSSSEAILNTMSQELVPASRVALAGEYGAVTYRKSKRGPKQLAPHPNIIRVLRAFTSSVPLLPGALVDYPDVLPSRLHPEGLGHGRTLFLVMKNYPCTLRQYLCVNTPSP-RLAAMMLLQLLEGVDHLVQQGIAHRDLKSDNILVELDPDGCP-WLVIADFGCCLADESIGLQLPFSSWYVDRGGNGCLMAPEVSTARPGPRAVIDYSKADAWAVGAIAYEIFGLVNPFYGQGKAHLESRSYQEAQLPALPESVPP----DVRQ--LVRALLQREASKRPSARVAANVLHL 509 The following BLAST results are available for this feature:
BLAST of TCONS_00007618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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