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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007623 ID=TCONS_00007623|Name=TCONS_00007623|organism=Clytia hemisphaerica|type=transcript|length=312bp
TcggcaaaatttcatctttcgTATATTCGCCAGAAACTGTTGGATATCCG
TCTAAACGCCATTTACCAAAACCACCATCTAAGATGGAAATGTTGTCATG
TCCAAATGCACGAAACATCCACCACACTCTTGGTGAGAAGAAAGCACCCA
GTGAATCATCGTCATCGTAAACGATCACGTGGTGTTGATTGGAGATTCCC
AGACTGGTGACGTAAGCAGAGAAGTCACGTGATGTAGGCATCATGATTGG
ATAATTGGAAGTTTTATCAGAACTTTCAGTGAACGAGAAAAACTTGGAAC
CTGTATAAATAA Run BLAST on NCBI transcript from alignment at sc0000078:519009..521306- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007623 ID=TCONS_00007623|Name=TCONS_00007623|organism=Clytia hemisphaerica|type=transcript|length=2298bp|location=Sequence derived from alignment at sc0000078:519009..521306- (Clytia hemisphaerica)
TCGGCAAAATTTCATCTTTCGTATATTCGCCAGAAACTGTTGGATATCCG
TCTAAACGCCATTTACCAAAACCACCATCTAAGATGGAAATGTTGTCATG
TCCAAATGCACGAAACATCCACCACACCCTTGGCGACGAATATGCACCAA
CTTTTTCATTATCATCATAAACGACCACGTGGTGTTGGTTCGAAATCCCT
AAATTGCTGACATATGCAGAAAAATTTGCTGATGTTGGTAACATTCGATC
AAAAGGTGTGTCTAAATCACGACATTCATCAAAAGAGAAGAACTTTGAAG
CTGGGATACGATTCCCGAGATGCATTGCACGATAATCACGATCATCTAGA
TCCCATCGTGCATCCAAAACCCTCAATTTTTTATGCCATTCTTTATTTTG
TAATTTCTCATGCAGTTCTTCACAACTTGTTAAAGCTGATGTTTGTCCAG
TGTGCACAGAGCTGTAACATCGTTGCCGAGTGTACACCAAGCTTCTTTTG
ATGAATGTTACCAAATATCTTTTCGTTGGTATCATTCTTTTTCTTTTGTT
TATTTTTTATTTTTCTAAAAATAATAAAATAAATACAAGTTTGAGTTGAA
AGATGTAAGACAGTCAATATATTTTCCTTGTGAATTGTATGAAAAGCTCT
TAAAGAGTTTGAATTTTATTTTTTGTAGAATGTGTTTTCGGAAAAAGGAA
AAAAAAAAACGTATTTCATTTAACTATTCCTGTCTCTTACGATATATTTT
CCAGTGTGTAAACTACATGTGAAATTTTAGAAAATAAAAATTTAGAAAAA
AAAAACAAATCGATTACCCCATACTATAATAGATTCGGTACAAAAGTAAA
AATATAGAAAGTTATAAAAATATATATCCATGCAATGGTATCTCATATAT
TCTCCAGAGCAAACGACCGGAACACTTAGTCCAAAAGACTATACATTACA
AAATCCGCCATGTCTAAGACCCTTAAAGTCCCTTCCCCGTGAACGTGTAA
TGATTTCCCCCATTTCATCAAAAGCAAAAAGTTTGACGAACACAAAATTC
CCTTTACTGTGTTAGACAATCGAAAATTGATTGGTTGGAATCAATCACGT
GATACAAGTTCAGGAGCTCGTTCCAACCATTCAGCAAACGAGCCATCGTA
AACAGGAATTTCTTTCCCTCTTGCTTGAAACAGAGCATGCGCAGCTAAAG
CAGCTGTCACTCCAATCTGGCATGTTGAAATAATATCTGAATCAATATCC
ACTTTGCTGGACCGGAAAAATTCAACTAAATCCTCTTTGCTTTTCATTGT
TTTATCTTTGTTGAAAAAATCAGTGAAAGGGGTCATCTTGGCTCCTGGAA
TATGTCCGGCAGAGAATTCGTCGAGAAGACGGGTGTCAACTAGTTGTGTC
GGATTTTCAGATTCGACGTCTCTTTTCATCTGTTCAAAAGTGACGTAATG
TTTTGGTTCTTGAATTGCTTTGAAAGGTTGGTCTGGTGCTAAAACGAAAA
AAGAGCCATCACATTGCAGTCACCTGGAAAATGATCAGTGTAATTAGCTG
ACATCTGTATTAGCAGCTGTTTTTTACTGTGGTCTAAGGTAGCTGTTTAG
GAAAAATAGAGCAGCTTCTTCTATGTACAATCACTGCCGTAATATCTGGC
ACTAAAGGCAATCCCCTTTAGTGCCAAAGTGCCAAAGTGTACTCCGAGTG
AATTTTGAGTGTTTTATAAAGTACAGTTTAAAAGTATAGTTATACTTGAG
ACTCGAGATCTAAAAGCTTAAAAACGTTCCAATAAGGATGAGAATATAAA
TATAGCCAGGAAAGTGGCTACCACTCTTCCCCACCCGAATAGAAAAATTC
AATGAAACAAAGAAGTACTGAAATGCTAATTCTCGCCCGGCTTTAAATTC
TGAAAATTGTTAAAATACCCAAAATTGTAAATATATTTCGACGGTGATTG
CGGTGCTGTGTAAGAGAATGTTGAAACGAAACTTACACGCCAAATCTTCT
TCCATCGTGTAATCACCAGAAACTGTTGGATATCCGTCTACACGCCATTT
ACCAAAACCACCATCTAAGATGGAAATGTTTTCATGTCCAAATGCACGAA
ACATCCACCACACTCTTGGTGAGAAGAAAGCACCCAGTGAATCATCGTCA
TCGTAAACGATCACGTGGTGTTGATTGGAGATTCCCAGACTGGTGACGTA
AGCAGAGAAGTCACGTGATGTAGGCATCATGATTGGATAATTGGAAGTTT
TATCAGAACTTTCAGTGAACGAGAAAAACTTGGAACCTGTATAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007623-exon-sc0000078-1575043694:521191..521306 | TCONS_00007623-exon-sc0000078-1575043694:521191..521306 | Clytia hemisphaerica | exon |
| TCONS_00007623-exon-sc0000078-1575043694:519009..519204 | TCONS_00007623-exon-sc0000078-1575043694:519009..519204 | Clytia hemisphaerica | exon |
| TCONS_00007623-exon-sc0000078-1510915933:521191..521306 | TCONS_00007623-exon-sc0000078-1510915933:521191..521306 | Clytia hemisphaerica | exon |
| TCONS_00007623-exon-sc0000078-1510915933:519009..519204 | TCONS_00007623-exon-sc0000078-1510915933:519009..519204 | Clytia hemisphaerica | exon |
| TCONS_00007623-exon-sc0000078-1491911889:521191..521306 | TCONS_00007623-exon-sc0000078-1491911889:521191..521306 | Clytia hemisphaerica | exon |
| TCONS_00007623-exon-sc0000078-1491911889:519009..519204 | TCONS_00007623-exon-sc0000078-1491911889:519009..519204 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:519009..521306 - |
Blast
BLAST of TCONS_00007623 vs. Swiss-Prot (Human)
Match: THTR (Thiosulfate sulfurtransferase OS=Homo sapiens GN=TST PE=1 SV=4) HSP 1 Score: 103.99 bits (258), Expect = 1.292e-27 Identity = 45/90 (50.00%), Postives = 60/90 (66.67%), Query Frame = -3
Query: 32 GSKFFSFTESSDKTSNYPIMMPTSRDFSAYVTSLGISNQHHVIVYDDDDSLGAFFSPRVWWMFRAFGHDNISILDGGFGKWRLDGYPTVS 301
G+ FF E D S Y +M+P+ F+ YV LGISN HV+VYD + LG+F++PRVWWMFR FGH +S+L+GGF W +G+P S
Sbjct: 55 GASFFDIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEH-LGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTS 143
The following BLAST results are available for this feature:
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