TCONS_00007633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007633
Unique NameTCONS_00007633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007633 ID=TCONS_00007633|Name=TCONS_00007633|organism=Clytia hemisphaerica|type=transcript|length=1296bp
ACTTTTTAAATCGATCAATTCACTGgcatgtttttgttgattttaggaat
aaataaaaatgttacaaacaattagaacaataaattcaGTCAACAAAAGG
GCACTGCTTAATTGTGGTGTTAAATTTGCTGGCTTTTCCACGACTACTGA
TGTTGATTTGAAGGATGAATTGAGGCTTGAATACCAAAATGATGGAGgTA
TTGCTGTTGTTTCTCTTAACAGACCTGCTGCCAAAAATGCCCTGAGTATC
AATCTTATGGCCTTGTTTGAGAACTACATGAATGAATTAGCATCCAATAG
AAATGTCCGTGCTGTTGTACTACGAAGTCTTGTTCCAGGTGTCTTTTGTG
CAGGCGCTGATTTAAAAGAGAGAAGAAAAATGACAGAAGCTGACGTTCCA
ATGTTTGTATCCAGGGCTCGAATGTTATTCCAGAAACTGAATGACCTGCC
AGTGCCAACTATTGCTGCTTTGGAAGGAGCAGCCCTTGGTGGTGGGCTAG
AGATGGCGTTAAGTTGTGATTTTCGTATTGCATCCACTACAGCAAAACTC
GGTTTACCAGAGACTAAATTAGCTATCATACCAGGGGCAGGTGGAACTGT
ACGTCTCCCTCGACTTATTGGGGTATCAAAAGCCAAAGAGCTCATCTTTA
CCGGAAGAGTTTTGAACAGTACACAAGCTGCTGATATTTCACTGGTTGAA
TATTCTGTTGATCAAAATGATAATGGTGATGCAGCTTTTGTGCGAGCTAT
GGAACTTGCAGGAGAAATGCAATCGCAAGGCCCTGTGGCGTTGAGAGCAG
CAAAGAAAAGCATCAGCAGGGGGATAGAAGTGGATCTTCATTCCGCTTTG
ACATACGAAGAATTATGTTACTCACAGGTTGTTCCAACCAAAGACAGGAT
AGAAGGGCTGACGGCGttcaaagaaaaacgaaaaCCAGTATATAAGGGGG
AATAATCTCAAAAAGAAAGCAACACTTCCACAAACACCTCTTGTCATTCC
AGATTAATTCACTCAAGACTATTATTTATAGGATTTCATGGattagttta
tttttcattaatttttctttttttactagATAATTTTATTAATGATTTCT
TAATGCAATATTGTACTTCTTATTGAAAATAAAGGATTTTTAGAGAGAAA
AAAGACATATATTTTTTCATCGTATTGTCTTACCTGCACCAAAATATCAA
ATAACTGATGCTAAATTCTTCTTTCTTTATGCCAATCTGTCACCCGACTT
TCGACGTGAAATTTAAGATACAGTTCAATTGAATGTTCTAAAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00007633-protein

>TCONS_00007633-protein ID=TCONS_00007633-protein|Name=TCONS_00007633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MLQTIRTINSVNKRALLNCGVKFAGFSTTTDVDLKDELRLEYQNDGGIAV
VSLNRPAAKNALSINLMALFENYMNELASNRNVRAVVLRSLVPGVFCAGA
DLKERRKMTEADVPMFVSRARMLFQKLNDLPVPTIAALEGAALGGGLEMA
LSCDFRIASTTAKLGLPETKLAIIPGAGGTVRLPRLIGVSKAKELIFTGR
VLNSTQAADISLVEYSVDQNDNGDAAFVRAMELAGEMQSQGPVALRAAKK
SISRGIEVDLHSALTYEELCYSQVVPTKDRIEGLTAFKEKRKPVYKGE
Run BLAST on NCBI

transcript from alignment at sc0000078:623450..632988-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007633 ID=TCONS_00007633|Name=TCONS_00007633|organism=Clytia hemisphaerica|type=transcript|length=9539bp|location=Sequence derived from alignment at sc0000078:623450..632988- (Clytia hemisphaerica)
ACTTTTTAAATCGATCAATTCACTGGCATGTTTTTGTTGATTTTAGGAAT
AAATAAAAATGTTACAAACAATTAGAACAATAAATTCAGTCAACAAAAGG
GCACTGCTTAATTGTGGTGTTAAATTTGCTGGCTTTTCCACGACTACTGA
TGTTGATTTGAAGGATGAATTGAGGCTTGAATACCAAAATGATGGAGGTT
GAGTATTATAAACAGTCAGAGATAAGCTCAAATTAAATAATTATTGTTTT
TTAACCAGATGGGCTCTTTAGATGATAAGAAAGAAGAAAGCATATACAAT
TGAAGAAAAATTAAATGTAGTTAGTTTTTTGGCCATATGTTTTTTGCTTG
CCAATTTTCAATGAATGCTTTAATCCTCACATTTCATATATATATCGTTG
AAAATATATTCAGAGTGCTAGAATTTCTAAAAAAAATCATTTTTTTCTTC
TTAATTTTTTATCTTCATTTTCGGAAATTTTTAGAATGATTTTTCTCAAA
AATGATATAGTGCTCTGAAATGTCTTGTCAATGGTATAAGAAAGATTTTA
TTTCAATTTCTGGAGAGTATAACATATACTCTAGGGGTNTTTTCTCAAAA
ATAATATAGTGCTCTGAAATGTCTTGTCAATGGTATAAGAAAGATTTTAT
TTCAATTTCTGAAGAGTATAACATATACTTTAGGGGTATATATTTTTACA
GGTACTGAATTTTAGTGAATTGCTGGTTTTTTCCAAGAAACATATTTCGT
GAGTATTCTTTTTTTAAATCAAAATTGTGACTAAATGGTGACAAAAATGA
AAAATTCATTCTCTCTTTTATTTATCGAAAATTTATCAATTTTCGACCTA
TTTTGAAATTTTTCCTGTCTATTTATTTTTGCGATTTTATGTTTTTGAAA
AGTTTAAACAGTACTAAATTTTGGGAAAGTACGTACTCTTAAAATTAAGT
TCAGACAAAAATCTAGTACCCACAAAAATATATACACTTAAGGTATTGGA
AATTTGTTTCAAGTAAAAATTCAGCTTGATTGAAGATTCTTCTTTCTATA
TTTTAGGAACTTCAAGTACAACAAGCATAACTAAAAACCATTCTTGTTTT
TCCTTTTTAGGTATTGCTGTTGTTTCTCTTAACAGACCTGCTGCCAAAAA
TGCCCTGAGTATCAATCTTATGGCCTTGGTAATTATATTAAATTAAAAAA
GTTTTTATTTCCATCATCATTCATTCATTTCTTTGTTTTTAAAGACTGAT
TATACAATACTTTTTAGTTTCTATTATAAAACGATGTAAATAACTGTAAA
ACAGTGTAATAAAAATGAATTCCAGCAAAAAAGGGAGCAAAAAAGTGCAC
CCTTTAATTCAACAGATTATAATAAATTGTGCTTTTTGTTTTAAGTTTGA
GAACTACATGAATGAATTAGCATCCAATAGAAATGTCCGTGCTGTTGTAC
TACGAAGTCTTGTTCCAGGTGTCTTTTGTGCAGGTAAGATATCAAACAAA
GTTTCCAGAACAGTCTAAATGTCTTCATGGTATACTCTAAAAAAATTCTT
CCAAGACTTGTGTAACAAAAACACCAGATTGAAAGTAGTGACAGACTGAT
TGCGCTTTATAATCACCAAAAAGTCTACAAAACGATTTCTGTTTTCGTTG
TATTGTAGTCATTTTAAGTAGATGGTGGTTCAGTCAGATTCTTAGAAAAC
TACTTTTTGTCAGCAAGCAGATAGAGGTCCGTCAATATTAGATTCATCAG
ATGCCACACCAAAAATGGATTTTATGAAAACCAACATTTCTTATTCTGAT
ACAGTCATTTTCACTGTTGTTCAATTTAGATAAAAGTTAAAAATGATTTA
TCAGTTTTACAAATGGTTTTGAGATTTGCAGTGTCAGTATAGCTTATTCC
CAATGACATTAAAAGAGTTGATTATTTGATTGACCATTTTTGTCCTGATA
AGATGAGATGACTGTGTTGAAAAAGCTTTTGCTATTTCCTTTATATATGA
AATCTGTCGACAATTTTACTTAAGGCCTTAACTTAATTTCGTCCTTAATC
TTTTTTCTCAGGCGCTGATTTAAAAGAGAGAAGAAAAATGACAGAAGCTG
ACGTTCCAATGTTTGTATCCAGGGCTCGAATGTTATTCCAGAAACTGAAT
GACCTGCCAGTGCCAACTATTGCTGCTTTGGAAGGAGCAGCCCTTGGTGG
TGGGCTAGAGATGGCGTTAAGTTGTGATTTTCGTATTGCATCCACTACAG
CAAAACTCGGTTTACCAGAGACTAAATTAGCTATCATACCAGGGGCAGGT
TAGAATTAACAGGTTTGATTTTCTAAAAATTATTGTAAGATGGTTCTCTG
CTGAGTTGATCTGAGTACATAGTGGTTTTTTGGCAAGCTCTTACGTTATT
ATTGTAAACCAACAACGCATACTAGATTATAACAAAAACAAAGTTTAGAA
CCAAAAATCATGATGAAATCATATTTCATCTGTCTACTTTCAGAACATCC
TGAACCATTCATGCTTTATAATAATATACTTTCAAGTAATGTACAATATT
CAACAATTTATTATGACAGGTGGAACTGTACGTCTCCCTCGACTTATTGG
GGTATCAAAAGCCAAAGAGCTCATCTTTACCGGAAGAGTTTTGAACAGTA
CACAAGCTGCTGATATTTCACTGGTTGAATATTCTGTTGATCAAAATGAT
AATGGTGATGCAGCTTTTGTGCGAGCTATGGAACTTGCAGGAGAAATGCA
ATCGCAAGGCCCTGTGGCGTTGAGAGCAGCAAAGAAAAGCATCAGCAGGG
GGATAGAAGTAAGGGTTTTTGTTATACTTGCCCAATTATGTCTTCTTTTC
TCATTTTTCTTCGACAATAATATATAACTTTTTATAATAAGCAGATATTC
AATAGGTAAAAGTTGGTTATTGAGATTTATTAACCGGAGGTGATGTACAC
GCTTTTTTTTTTATAAGAATGGTGTTTTTTCATTTCATCATGAATATTCT
TAACTTTTTGGCGAAAATTATCCAAAAATATTCTTACGGTATTCTTAGGT
TAAGATCGAAATTGGCAATCTACAGGTTAAAATGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNAATTCCATGATGGTGATATTCTTACCATATTCTTAATTT
TTTGGCCATTTTCATCATGGACATTCTTATAAAGTGTATTCTTATAAAAA
AAAAAGCGTGTAATATTCAACGAGGTGAAAACCTATTGAATGTATGATTT
ATTATATACCTAGAGATAAAAACAATACATAAACAAGACGACTTAAAGTC
GAAAATTTCGCATAATATTTGAACATCAACGACGAAGACGCGTGAAACGT
GACTCCTGCAACATTATGCATTTTGAATGAAACGTTACACAAAATATACA
CATTGTATTGTACAAACTTTGTGAAATTCAAGATTACAAGCCTATTTTTT
AGCCCTGTGAAAACCTAGTACATATGTGTTAACCGATTTTTGAGTGCCAA
AAACGACGTTTCACAACCTTGTGATCTGCTTATTTGTTCATATGTGAAAT
GCAAGTTTACCAGCCTATTTTTCAGCCTGGCGAAAACCAATTTTTTAGAT
TGAAAGGACTTAATTCATAAGCTTATTTCTTCACTTTTTATCATTTTTCT
TCATTGTACATATGTATATTTTTTCATTGTAAAAGTCATTATAAGTTCGT
AAAACATTTGGGATTAACAAACTCCCAAACTAGACGATAGGAGAGATACG
GAAACGAGTTTTTCCGAATTTGGTATCAATTAGTGAATTTGTGCTAGTTT
GTATTGTTATTCTCAACATCCCAATCTATGGTAACCACAATTAACTCAAC
CTTGTGAAATGGAATTTAACAAGCTTACTTTTGAAACTTGTGAAAACAAT
TTTTACATTGCAAATACTAAATTCACAAATTTGCCTTAGCAAAGAATAAA
ACATACCCAGGATTTGCAAAATCCCAAATCAGACCAAAGAAAATGTTTTT
GGNGATTGCTTGAAAATGCACTCAATTGTGGCAATTATGACAAATTAAAA
AAGAAAACATTTGCATTTAGCAAAATAACCATTTTTGAAAAAGTGGGGGC
ATAGCAAATGAACTCTTCATTCTTTCATGCCAGAAACCTCATTTTGTCCT
TTGAAGGAACTTGTGATAAAGACTTCTTTCACTTGTGCAAAGTTTATATG
AACTTCTTTCTATAAACAGTAGAATTTATCTAAAATTGAGAAAAATGGCT
AGTCAGANATCCCAAGTTATGATATATACAATTAACAAACTTGTGAAATC
GAATTTTACAACCTATTTTTCTTAAGCTTGTGAAAATTAATTTTGTCATT
GTGAAAATCAAATTTACGATGACCTTGTGAAAAGAAAGTCTCAATGTGAA
ATAATAAAACCCAATGTTCACAATATCCCAAACTTTATTTCACAAACTAA
ATTTTGAAAATCCGATTTTTAAGGGCCGGAAACAACGTTTCANTCTAAAA
TTGAGAAAAATGGCTAGTCAGAAAAATCTGTTGTATACTATCTTCGCTTT
CTGGTATGAATGATGGCCCACCATCAAAATCATTGGCCTTTCCAGAAAAA
AATTGAATAATGACAAGCATCAGTTGACCCCATGGAGAAAGTTTAACCCC
CCCTCCGGACATTTTCTGGAAGAGCCCATTAAAGTATTAAAGGCAAAAAG
CAGTTGAGCTCCAATTTTAAGCTTTAAAGAAATAATACTCCTTGTGTTGA
GCTTTAAACTGCATTCTATTAAACAAACCCTCCCCAATCTCTTGCCAGTT
ATCCCGTGAAAAATATATACCGTGAGATTGGGTAACTTGCATCAGTGGAG
GCTAACATGNAGGTCGTAGATGAGGTCGTAGATACCCTGTTTTCTATGAA
AAATCTCAATGCATTAAAAAAAAGATTCCTTAAAAAAAAGATTCCTTAAA
AAATGCGATTAAAGAATTCCATTTTATAAGCGCGGGTATAAGCGTAAAAA
AATCTTTAATTTCAGAATGGGTGCCGTAGGAAGCATTTTCATATTGGGGG
GGGGGGCTGAAGTTTAGTGACACCGCGAGGGCCAACCATGGTTTNNNNNN
NNNGGCTAACATGCATAGCCCTCAAATGAATGACCTGTCTGGTCATTAAA
ATACAATTACGCAGCTCTGCTCGCAGCTCTACTCTACCATTTTTGTTTTG
ATTTAATTTGTTTTTTAATGACCAGACAGGTCATTCATTTGAGGGATATG
CATGTTTACCTCCACTGATGCAAGTTAACTGATGCAAGTTACCCGATCTC
ACGGTAGGGGAAAGATCCCAGAAAAGTAACAAGAATCTTAGTGCAGAAAT
GGCAATCTGTACAAACAACGGTAAAACTGGAGTTTTTAATGATTCAAAAT
GAAAATCCTGATTAGCAAAAGGTGTATCAAGATCAGTGAAGTTTGATTGA
AGCTCAATTAGTTTGATTTATTACCTTGTAGCCCATTCTTTTAACATTCC
GACGGCTTATTAGCAGACGCCCACGCTAAAGCTTAAAGAGCGAGCCAATA
TCTATTATAGACCCTTTTTTAATGAGGCCACCCTGTTGAATAATTATGTA
GTCCAGCAAAAAAAAACAATGATATAGCCATGCATAATTATTATAATATG
CATGAAACAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
TTATAATATGCATGAAACAGTAATTATGCATGGCTGTATCATTGTTTTTA
TGCTGGACTACATAATTATTCAACAGGGTTGCCTCTTTAAAAAAAGATCT
ATTCCATCGGGGAGGAAAAGCTGGAACTTTTACTAACCAAACTCATCGAA
CACCAATCAAACTTCATACCTATCAGATAAAAAACTGTCAAACAATCATA
TAATCAAACTTATCAAAAAATTTCTTACCAAATCAGGTTCGGTAATCGAA
CAGCTATCATTTCGGTTTGATTTCGATGGATAGTTCCACAGTTCGATTAA
CGACCCTGGACACCGCCGTACATTGTGCGGTGGTGTACGGTGGGGCTGGA
TCTAAATGTCCAGTAGGAATTTTGGGTATTTAAGCTTCCTGGAAAGCACC
ACCATACGATGTCTGGTGGGACCACTGAACTTTGTACGGCGGTGAAAATA
GGTTATTTGAAATCCTTCGTACACCCACCGTACAATGTCAATGTCTCCAG
GCACCAGTATGGATTCCAAAAAATCTCGCGCCGAAGATATTTTTCCGTGC
AGCAAGCCTCACGCCAAGCAAGATTTCTTTTGTACCAACATTCAATTTTT
CAATAAGGGTGCAAGATGGGAAAAGAGGCGCATGCGCCAACATAATTAAT
AAATTGACGCGAGCGCAAGCGAGCGAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATCTTT
GTAAGTACCCTTACGCCAATGCGCCAAAAACGTTTCAGTTGTATGCCGAA
GAACTTCGGCGTTAGTTACACAAAATCCATACTGGTCCAGGCAGGGTCGT
TTTGATTACGAAAATGATTGCTAAATTTCAATTGACATGATTTCTAGGAA
ATACTTGCTAAAACTGACTGTTTGTCACAACTGGTTTCACTATTAACACA
TAACTATCTGGTAAAAAGAGGAAAAAAAGATCATACCTGCGCTGTTTGTA
GTTTTGGTGAAGAAGAGAAGAGAGGGTTAATGTTGTTGTTGTGGAAAATT
AACTCTTTTTGTACTACTTTACTGACATGATCAATTTATTGGTGTATTCA
CAAACTACACAAATATAAAACACTTAGTAGTAAACGAATATTAAACCTCT
TTAAATACTCTCCAAAAGACCAGAAAACATGATAAAAATTTATACAACAG
CAGCAAGTTTCAAAAGCATGTGCAATCAGCAGCCATTAAAAAGTTCTCAA
GATGAATGTTTACAAAGGCTTGGTTACACTTTTTGCACTAGCGTATTTTA
ATTATTAAGAAAAGCGCTGTTTTTTATCACTTTTTATCTTTGTGTGTGAG
TCCACCTTTAGAATATTGGCCGTAGTACGCCCGCAGCCAAACGCCCACGC
CATAATTTGCGCCCCAAAAATTTTCTCGATACATACATAGAAAGACTATC
GTAATACTTTCGCTATGCGAAATTAATAATCTAAATAGTCGAACGATTCA
CATAAAACACTCCAATAATCGAACGTTCGAATGTTTTTCTTTTTAATGAT
TTTCTTGATAACTTTTAGTCATAAAATTTGTTCATGAAATCAACAATAGA
TTTATTTTAATAAATCTTTTTGATAAACAACTTAAAAGAGCGACAAAAAA
TTTAATTTTTAAAGCAAAATTTGAAGAAAAAAATTCTGCCATGTTATAAT
AGCCTTGGTATATCAGGAATTATTCAATGACTCGTTTTGCCTACAGGTAT
ATAATAATACGGATTATTTACCAATCATTTTTTTAGGTGGATCTTCATTC
CGCTTTGACATACGAAGAATTATGTTACTCACAGGTATGACATGCCTTGA
ATTATAAATGATTTCTATAGGAAACGCTCAAAAAAGCCTGAATCTGATCC
ATATTTTCTATTTTTAAAAGTGTTTTCAATAGGAACTTATTTGATAGCAA
GATTAGTAAAAAGGAACGATAATACCGGGTGCGTCAGAAAAAACTTTGGA
CGTTTGGTGAGCCACTGGGACCGAGCAAAGTCTTTTTGAAACTCAAAACC
ACTTTTATTAGAAAGAGGATAGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTTGTG
ACAATAGACAGTGTTGTCGAGGTATGTTTTACAGAACACAACTCTTTTTC
TTTTTTCTCAAAAATTCACCAAAATAAAATTTTTAATTGTTGTTGTTTTA
CAAATTCCCGCTCTGGTATGTTTTATTACCCAGTGGAAACATTAATGACA
TCGTTAAAAACGTGCACATCAGAACAAAAGAGAAAGAGAGAGATAGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGACTATCCTCTTTCTAATAAAAGTGGTTTTGAGTTTCAAAAA
GACTTTGCTCGGTCCCAGTGGCTCACCAAACGTCCAAAGTTTTTTCTGAC
GCACCCGGTACATCTGGTTTCTATTCGAACCTACCAAACTACATAAGTTT
AAGACTTATGAATTCTTAAGCTTCAGGCCCACTTCCACCTCGTAATCATG
TTAGCTCTCTGAAATCGGCTATTGTATTGTTTATTTTTGATTATGTTATA
TGCTATGTATATTTTTTTAGGTTGTTCCAACCAAAGACAGGATAGAAGGG
CTGACGGCGTTCAAAGAAAAACGAAAACCAGTATATAAGGGGGAATAATC
TCAAAAAGAAAGCAACACTTCCACAAACACCTCTTGTCATTCCAGATTAA
TTCACTCAAGACTATTATTTATAGGATTTCATGGATTAGTTTATTTTTCA
TTAATTTTTCTTTTTTTACTAGATAATTTTATTAATGATTTCTTAATGCA
ATATTGTACTTCTTATTGAAAATAAAGGATTTTTAGAGAGAAAAAAGACA
TATATTTTTTCATCGTATTGTCTTACCTGCACCAAAATATCAAATAACTG
ATGCTAAATTCTTCTTTCTTTATGCCAATCTGTCACCCGACTTTCGACGT
GAAATTTAAGATACAGTTCAATTGAATGTTCTAAAGAAC

Coding sequence (CDS) from alignment at sc0000078:623450..632988-

>TCONS_00007633 ID=TCONS_00007633|Name=TCONS_00007633|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at sc0000078:623450..632988- (Clytia hemisphaerica)
ATGTTACAAACAATTAGAACAATAAATTCAGTCAACAAAAGGGCACTGCT
TAATTGTGGTGTTAAATTTGCTGGCTTTTCCACGACTACTGATGTTGATT
TGAAGGATGAATTGAGGCTTGAATACCAAAATGATGGAGGTATTGCTGTT
GTTTCTCTTAACAGACCTGCTGCCAAAAATGCCCTGAGTATCAATCTTAT
GGCCTTGTTTGAGAACTACATGAATGAATTAGCATCCAATAGAAATGTCC
GTGCTGTTGTACTACGAAGTCTTGTTCCAGGTGTCTTTTGTGCAGGCGCT
GATTTAAAAGAGAGAAGAAAAATGACAGAAGCTGACGTTCCAATGTTTGT
ATCCAGGGCTCGAATGTTATTCCAGAAACTGAATGACCTGCCAGTGCCAA
CTATTGCTGCTTTGGAAGGAGCAGCCCTTGGTGGTGGGCTAGAGATGGCG
TTAAGTTGTGATTTTCGTATTGCATCCACTACAGCAAAACTCGGTTTACC
AGAGACTAAATTAGCTATCATACCAGGGGCAGGTGGAACTGTACGTCTCC
CTCGACTTATTGGGGTATCAAAAGCCAAAGAGCTCATCTTTACCGGAAGA
GTTTTGAACAGTACACAAGCTGCTGATATTTCACTGGTTGAATATTCTGT
TGATCAAAATGATAATGGTGATGCAGCTTTTGTGCGAGCTATGGAACTTG
CAGGAGAAATGCAATCGCAAGGCCCTGTGGCGTTGAGAGCAGCAAAGAAA
AGCATCAGCAGGGGGATAGAAGTGGATCTTCATTCCGCTTTGACATACGA
AGAATTATGTTACTCACAGGTTGTTCCAACCAAAGACAGGATAGAAGGGC
TGACGGCGTTCAAAGAAAAACGAAAACCAGTATATAAGGGGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004308XLOC_004308Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007633-proteinTCONS_00007633-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007633-exon-sc0000078-1575043694:632792..632988TCONS_00007633-exon-sc0000078-1575043694:632792..632988Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1575043694:631811..631878TCONS_00007633-exon-sc0000078-1575043694:631811..631878Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1575043694:631506..631593TCONS_00007633-exon-sc0000078-1575043694:631506..631593Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1575043694:630691..630927TCONS_00007633-exon-sc0000078-1575043694:630691..630927Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1575043694:630181..630419TCONS_00007633-exon-sc0000078-1575043694:630181..630419Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1575043694:625105..625152TCONS_00007633-exon-sc0000078-1575043694:625105..625152Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1575043694:623450..623868TCONS_00007633-exon-sc0000078-1575043694:623450..623868Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1510915933:632792..632988TCONS_00007633-exon-sc0000078-1510915933:632792..632988Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1510915933:631811..631878TCONS_00007633-exon-sc0000078-1510915933:631811..631878Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1510915933:631506..631593TCONS_00007633-exon-sc0000078-1510915933:631506..631593Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1510915933:630691..630927TCONS_00007633-exon-sc0000078-1510915933:630691..630927Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1510915933:630181..630419TCONS_00007633-exon-sc0000078-1510915933:630181..630419Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1510915933:625105..625152TCONS_00007633-exon-sc0000078-1510915933:625105..625152Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1510915933:623450..623868TCONS_00007633-exon-sc0000078-1510915933:623450..623868Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1491911889:632792..632988TCONS_00007633-exon-sc0000078-1491911889:632792..632988Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1491911889:631811..631878TCONS_00007633-exon-sc0000078-1491911889:631811..631878Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1491911889:631506..631593TCONS_00007633-exon-sc0000078-1491911889:631506..631593Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1491911889:630691..630927TCONS_00007633-exon-sc0000078-1491911889:630691..630927Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1491911889:630181..630419TCONS_00007633-exon-sc0000078-1491911889:630181..630419Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1491911889:625105..625152TCONS_00007633-exon-sc0000078-1491911889:625105..625152Clytia hemisphaericaexon
TCONS_00007633-exon-sc0000078-1491911889:623450..623868TCONS_00007633-exon-sc0000078-1491911889:623450..623868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:623450..632988 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
200.268	187.4	414.964	439.565	208.32	160.096	112.583	117.773	128.524	127.583	115.569	120.096	92.9045	86.1352	136.996	173.251	85.9999	76.6955	30.9828	39.2468	39.0985	43.2211	112.716	93.5614	47.4472	47.1617	57.0607	42.9859	97.4114	84.1881
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001753Crotonase_core_superfam
IPR014748Crontonase_C
IPR018376Enoyl-CoA_hyd/isom_CS
IPR029045ClpP/crotonase-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00007633 vs. Swiss-Prot (Human)
Match: AUHM (Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.256e-88
Identity = 146/272 (53.68%), Postives = 206/272 (75.74%), Query Frame = 2 
Query:  143 TTDVDLKDELRLEY--QNDGGIAVVSLNRPAAKNALSINLMALFENYMNELASNRNVRAVVLRSLVPGVFCAGADLKERRKMTEADVPMFVSRARMLFQKLNDLPVPTIXXXXXXXXXXXXXXXXSCDFRIASTTAKLGLPETKLAIIPGAGGTVRLPRLIGVSKAKELIFTGRVLNSTQAADISLVEYSVDQNDNGDAAFVRAMELAGEMQSQGPVALRAAKKSISRGIEVDLHSALTYEELCYSQVVPTKDRIEGLTAFKEKRKPVYKGE 952
            ++++  +DELR+ +  + + GI V+ +NR   KN+LS NL+ +    ++ L S++ VR +++RS VPG+FCAGADLKER KM+ ++V  FVS+ R +   + +LPVPTIAA++G ALGGGLE+AL+CD R+A+++AK+GL ETKLAIIPG GGT RLPR IG+S AKELIF+ RVL+  +A  + L+ + ++QN  GDAA+ +A++LA E   QGPVA+R AK +I++G+EVDL + L  EE CY+Q +PTKDR+EGL AFKEKR P YKGE
Sbjct:   68 SSEMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYKGE 339
The following BLAST results are available for this feature:
BLAST of TCONS_00007633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AUHM2.256e-8853.68Methylglutaconyl-CoA hydratase, mitochondrial OS=H... [more]
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