TCONS_00007637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007637
Unique NameTCONS_00007637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007637 ID=TCONS_00007637|Name=TCONS_00007637|organism=Clytia hemisphaerica|type=transcript|length=647bp
TATTATTGTTGTAATTTTAGACaaatttatattaaaaaatggcaaatGAA
CAATTACCAAGCTCAATCAATAAAAAGTTTGAAGAGCTGGATGAATCTTT
GACTGATCTTCAAACTTCACTCAAAGCATTCCTGAAAATTCCTGTCACTG
ATATCAGAGAGAAGGTAAAAGATCCTTTGGAAAATGCCAAACTTGACTTG
ATGGTAGCTTACACTGCAAATTCTCTTTTTTGGACATATCTCATTACACA
AGGAATTGATCCAAAAACACACCCAATTAAAGATGAACTGcTAAGAATCA
AACAATACATGGGGAAAATCAAATTGGCTGAAGAAAAGAAAACTATGGCA
AGGGTTGATACAAGTGCGGCAAAGAGATTTGTTAGAAATGCACTTTGGAC
TCCTAGCTCTGCTCCAGAGTACAAACAGACGAACAGAAAAGACAAGAAAG
ATAAGAAGAGGAAAAATGAAGATCGAAATGAAAAGGAGACAAACAATAAA
gataagaagaagaagaaaaagaaaaagaaggaatGATATCAAAAATGTAT
ATCATTTTAAATTGACAGATTGGGACTGTATGTGCAGGAGAAATAAAATC
GTTATTAGTAGTCGTGGATTCGACTCAAATCTCATTGTAATTTGTAT
Run BLAST on NCBI

transcript from alignment at sc0000078:721789..723798-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007637 ID=TCONS_00007637|Name=TCONS_00007637|organism=Clytia hemisphaerica|type=transcript|length=2010bp|location=Sequence derived from alignment at sc0000078:721789..723798- (Clytia hemisphaerica)
TATTATTGTTGTAATTTTAGACAAATTTATATTAAAAAATGGCAAATGAA
CAATTACCAAGCTCAATCAATAAAAAGTTTGAAGAGCTGGATGAATCTTT
GACTGATCTTCAAACTTCACTCAAAGCATTCCTGAAAATTCCTGTCACTG
ATATCAGAGAGAAGGTAATACAAAGTACCACTATTTGAGATAAAAGGCTA
TGTGATTGAGCTGCCTCTATGCAGGGCTTGAAATAACGGTCAGCAAACAT
TGTCCGACCAAAATTGCTCCTTGTCCAACCCAAAAATCATAATTGTCAAG
CTAAAGCAACCCTGATTGGACATTTTGTCCGACCCACTTGAAATCATTAT
TTCGAGCCTTGTCTATGGGTGCTATTAAATGGTGCATGGGTATAGCAGCC
TTCCTAGTTTCCTAAAGCTGGTATCTAGTCACAAAATGAGCATAGAGTAA
TGTACCTAAGGCTGTGGAATGGCCTTTCTAATTTTTGTTCTGTATTATTA
TGTAAAAAAAAAGAAATGAGTTTGGAGTAAATATGTTATACACAACAGCT
TATCAAATAACAAGCTCTTGAATATTAAATGTATTGCTTTTAATGTTTCA
GGTAAAAGATCCTTTGGAAAATGCCAAACTTGACTTGATGGTAGCTTACA
CTGCAAATTCTCTTTTTTGGAGTATGTATTAGAAACATTGAAAACCTTGC
AAATCCATAGGCACCCTTTTATTAATATTATTTTTATTATTTAACTAAAA
ACATTTGAATCGTTCAATCATAACAGGCTACATTAAGCTCCCCTGATCTC
CCTCTTTTTGGAATTTTAATACTCAACATGCTATTTACTTCTTCAGCATA
TCTCATTACACAAGGAATTGATCCAAAAACACACCCAATTAAAGATGAAC
TGGTAAGACGATACATTCGATCTTTATTGGACCAAAAATCTCTCTTTCAA
ATTTTAGAAAGATTCAAATTACAGAGAGTAATTCAAACCACTCAGCTGAG
GGGACCAATATTTCAGTTCGAATCTCAGAAAGATTTGAATAATAGAGGTT
CGAATTAGAGTGAGTTGACTGTAAATCTGGCTGGAAATCTTTCACTCTTG
GAAACTCAATTGATGTAATTTCTACAGGATTCTAATTAAATTGCAACTTT
TAAACATTTTCAGCTAAGAATCAAACAATACATGGGGAAAATCAAATTGG
CTGAAGAAAAGAAAACTAGTATTATTTTTATAGCCTTTGTTATCTTCTTC
TAGTTCTACACTTTAACCTCCCATCAGAGGACTAAACTAAATCAATCGTT
TATACTTGTTACTGATAATTTCCCCACTGGTTAAGTTTAGCTGTGATCTC
TTACATGAACCAAAACTGGGTTGAAAAAAATGGTGATAAATATGGTAGTG
ATAAAGTTTTTATAGCTGTTAAAGCCTTTTGAAGAATTTTCATGAATTTT
TGTGGACTTGTTTAGCTTTAGATTGTATACAGATCTTCAATGATCAATCA
ATCTTTTGATTAAATTTTTTAGTGGCAAGGGTTGATACAAGTGCGGCAAA
GAGATTTGTTAGAAATGCACTTTGGACTCCTAGCTCTGGTAAGTTAACTT
CAGTTGGTTGTAACAATGTTTTTTTCTTCAAGTTAATGGATTGTTGTTGT
TAATCAGTGTTTAAGATTAAGATTGCCAAGCAAAGATTTTCATACTCTGA
CTTAAAAACCTTTTTTCTGTCCAATTTTTTCACAGAAGATACTAACTCTA
CTGAAAAATCTAACACCGATCCAGCTCCAGAGTACAAACAGACGAACAGA
AAAGACAAGAAAGATAAGAAGAGGAAAAATGAAGATCGAAATGAAAAGGA
GACAAACAATAAAGATAAGAAGAAGAAGAAAAAGAAAAAGAAGGAATGAT
ATCAAAAATGTATATCATTTTAAATTGACAGATTGGGACTGTATGTGCAG
GAGAAATAAAATCGTTATTAGTAGTCGTGGATTCGACTCAAATCTCATTG
TAATTTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004312XLOC_004312Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007637-exon-sc0000078-1575043694:723635..723798TCONS_00007637-exon-sc0000078-1575043694:723635..723798Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1575043694:723128..723197TCONS_00007637-exon-sc0000078-1575043694:723128..723197Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1575043694:722897..722952TCONS_00007637-exon-sc0000078-1575043694:722897..722952Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1575043694:722581..722635TCONS_00007637-exon-sc0000078-1575043694:722581..722635Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1575043694:722211..722276TCONS_00007637-exon-sc0000078-1575043694:722211..722276Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1575043694:721789..722024TCONS_00007637-exon-sc0000078-1575043694:721789..722024Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1510915933:723635..723798TCONS_00007637-exon-sc0000078-1510915933:723635..723798Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1510915933:723128..723197TCONS_00007637-exon-sc0000078-1510915933:723128..723197Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1510915933:722897..722952TCONS_00007637-exon-sc0000078-1510915933:722897..722952Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1510915933:722581..722635TCONS_00007637-exon-sc0000078-1510915933:722581..722635Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1510915933:722211..722276TCONS_00007637-exon-sc0000078-1510915933:722211..722276Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1510915933:721789..722024TCONS_00007637-exon-sc0000078-1510915933:721789..722024Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1491911889:723635..723798TCONS_00007637-exon-sc0000078-1491911889:723635..723798Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1491911889:723128..723197TCONS_00007637-exon-sc0000078-1491911889:723128..723197Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1491911889:722897..722952TCONS_00007637-exon-sc0000078-1491911889:722897..722952Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1491911889:722581..722635TCONS_00007637-exon-sc0000078-1491911889:722581..722635Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1491911889:722211..722276TCONS_00007637-exon-sc0000078-1491911889:722211..722276Clytia hemisphaericaexon
TCONS_00007637-exon-sc0000078-1491911889:721789..722024TCONS_00007637-exon-sc0000078-1491911889:721789..722024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:721789..723798 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.3923	2.00005	3.14944e-05	1.89375e-07	0	1.76924e-08	0	0	0	0	0	2.26735e-08	0.00108252	0	0	1.09957	1.4931	0	0	1.28638	9.01223	7.83514	12.7293	3.40924	0	0	0	6.80176	7.43899	12.5172
Blast
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BLAST of TCONS_00007637 vs. Swiss-Prot (Human)
Match: C1D (Nuclear nucleic acid-binding protein C1D OS=Homo sapiens GN=C1D PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.533e-32
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 3 
Query:   45 NEQLPSSINKKFEELDESLTDLQTSLKAFLKIPVTDIREKVKDPLENAKLDLMVAYTANSLFWTYLITQGIDPKTHPIKDELLRIKQYMGKIKLAEEKKTMARVDTSAAKRFVRNALWTPSS 410
            NE  P  I++     + S+  +   LK  + +   ++ +K+ DPLE AK+DL+ AYT NS+FW YL TQG++PK HP+K EL RI+ YM ++K   +KK   ++D  AA RFV+NALW P S
Sbjct:    7 NEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKL-DPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKNALWEPKS 127
The following BLAST results are available for this feature:
BLAST of TCONS_00007637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
C1D3.533e-3244.26Nuclear nucleic acid-binding protein C1D OS=Homo s... [more]
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