TCONS_00007640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007640
Unique NameTCONS_00007640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007640 ID=TCONS_00007640|Name=TCONS_00007640|organism=Clytia hemisphaerica|type=transcript|length=394bp
AATCCAATTAAAGTATGCTGAGAtgaaaacgaaataaaatattgaattaa
aagttGGGATTACGACGGCAGGTTACGGTAACAAATCAAGGACCATCATC
CGTAACTTATTGTAATTTACCATTTTATGGgactcaaaatttggaaatag
cGTATAGGtggatttccatgaaaatttttgagtgaaaaatgttGCCGAAT
TCGCCAAATTTGTAAGGAGAAGAAGTCTTCCCTTAATAAAATGGAAAGTT
TTATCGAAGTATAGTACTAGATGTTTTTGACCGGAGAGATTCAatcatat
ataatatatactTTCATAGGGATAGAACActaaaaacgtaaaattttTCT
CGGGAAGAATCTTTAGCGAATATTATTGGGTATCACTATTTGCG
Run BLAST on NCBI

transcript from alignment at sc0000078:1254..1647

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007640 ID=TCONS_00007640|Name=TCONS_00007640|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at sc0000078:1254..1647 (Clytia hemisphaerica)
CGCAAATAGTGATACCCAATAATATTCGCTAAAGATTCTTCCCGAGAaaa
attttacgtttttagTGTTCTATCCCTATGAAagtatatattatatatga
tTGAATCTCTCCGGTCAAAAACATCTAGTACTATACTTCGATAAAACTTT
CCATTTTATTAAGGGAAGACTTCTTCTCCTTACAAATTTGGCGAATTCGG
CaacatttttcactcaaaaattttcatggaaatccaCCTATACgctattt
ccaaattttgagtcCCATAAAATGGTAAATTACAATAAGTTACGGATGAT
GGTCCTTGATTTGTTACCGTAACCTGCCGTCGTAATCCCaacttttaatt
caatattttatttcgttttcaTCTCAGCATACTTTAATTGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004313XLOC_004313Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007640-exon-sc0000078-1491911889:1254..1647TCONS_00007640-exon-sc0000078-1491911889:1254..1647Clytia hemisphaericaexon
TCONS_00007640-exon-sc0000078-1510915933:1254..1647TCONS_00007640-exon-sc0000078-1510915933:1254..1647Clytia hemisphaericaexon
TCONS_00007640-exon-sc0000078-1575043694:1254..1647TCONS_00007640-exon-sc0000078-1575043694:1254..1647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:1254..1647 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.431305	1.83949	0.332146	0.504477	2.22367	1.40529	1.98993	2.66617	0.438259	2.00811	0	0.962739	1.28767	0	0.386084	1.72367	1.19183	0.478238	1.1449	1.24729	0.869947	0.909142	2.15035	0.41261	0.49141	1.04751	0	0	0	0.951899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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