TCONS_00007644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007644
Unique NameTCONS_00007644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007644 ID=TCONS_00007644|Name=TCONS_00007644|organism=Clytia hemisphaerica|type=transcript|length=381bp
TACANCCATCCAGTTACTGAATGGCGATGCTTTCTTGGCGTATTCTAACC
ATAAGTTATCTAATCGTTCGGCGATTTCAATAGCAGCTGCAAGGTTTTGA
CTTCTCTGCGTTGTAAGGTCACCAAGGTTATCCCAACCATCGCAAACCTT
TTTGCAACGGGCGTTGATTTCATCAACTTTACTATATCCTAAAGTGTTTA
ATTCTTGTGCAATAGCGACAATTTGTTCAACACGGTCTTGTTGTGCGGCT
AAATCTGATTCGAAAGCTTCGTGTCGTTTTCGTTGAGCCNatcccatcac
cctttgcgtttattacgcttgcacgcaaattacactcaattacaaagaac
aagtaataactttcacgacttttgaattaag
Run BLAST on NCBI

protein sequence of TCONS_00007644-protein

>TCONS_00007644-protein ID=TCONS_00007644-protein|Name=TCONS_00007644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MGXAQRKRHEAFESDLAAQQDRVEQIVAIAQELNTLGYSKVDEINARCKK
VCDGWDNLGDLTTQRSQNLAAAIEIAERLDNLWLEYAKKASPFSNWMXV
Run BLAST on NCBI

transcript from alignment at sc0000078:68878..69258

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007644 ID=TCONS_00007644|Name=TCONS_00007644|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000078:68878..69258 (Clytia hemisphaerica)
cttaattcaaaagtcgtgaaagttattacttgttctttgtaattgagtgt
aatttgcgtgcaagcgtaataaacgcaaagggtgatgggatNGGCTCAAC
GAAAACGACACGAAGCTTTCGAATCAGATTTAGCCGCACAACAAGACCGT
GTTGAACAAATTGTCGCTATTGCACAAGAATTAAACACTTTAGGATATAG
TAAAGTTGATGAAATCAACGCCCGTTGCAAAAAGGTTTGCGATGGTTGGG
ATAACCTTGGTGACCTTACAACGCAGAGAAGTCAAAACCTTGCAGCTGCT
ATTGAAATCGCCGAACGATTAGATAACTTATGGTTAGAATACGCCAAGAA
AGCATCGCCATTCAGTAACTGGATGGNTGTA

Coding sequence (CDS) from alignment at sc0000078:68878..69258

>TCONS_00007644 ID=TCONS_00007644|Name=TCONS_00007644|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at sc0000078:68878..69258 (Clytia hemisphaerica)
atgggatNGGCTCAACGAAAACGACACGAAGCTTTCGAATCAGATTTAGC
CGCACAACAAGACCGTGTTGAACAAATTGTCGCTATTGCACAAGAATTAA
ACACTTTAGGATATAGTAAAGTTGATGAAATCAACGCCCGTTGCAAAAAG
GTTTGCGATGGTTGGGATAACCTTGGTGACCTTACAACGCAGAGAAGTCA
AAACCTTGCAGCTGCTATTGAAATCGCCGAACGATTAGATAACTTATGGT
TAGAATACGCCAAGAAAGCATCGCCATTCAGTAACTGGATGGNTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004317XLOC_004317Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007644-exon-sc0000078-1491911889:68878..69258TCONS_00007644-exon-sc0000078-1491911889:68878..69258Clytia hemisphaericaexon
TCONS_00007644-exon-sc0000078-1510915933:68878..69258TCONS_00007644-exon-sc0000078-1510915933:68878..69258Clytia hemisphaericaexon
TCONS_00007644-exon-sc0000078-1575043694:68878..69258TCONS_00007644-exon-sc0000078-1575043694:68878..69258Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007644-proteinTCONS_00007644-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:68878..69258 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
487.403	445.508	410.551	390.472	199.691	143.312	298.863	361.456	185.275	270.603	203.123	144.778	428.675	374.523	280.858	360.346	340.785	365.338	412.191	444.606	167.882	166.525	294.355	294.475	197.747	211.673	378.178	374.646	483.239	569.565
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002017Spectrin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00007644 vs. Swiss-Prot (Human)
Match: ACTN1 (Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.609e-33
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = -1 
Query:    7 KRHEAFESDLAAQQDRVEQIVAIAQELNTLGYSKVDEINARCKKVCDGWDNLGDLTTQRSQNLAAAIEIAERLDNLWLEYAKKASPFSNWM 279
            K+HEAFESDLAA QDRVEQI AIAQELN L Y     +NARC+K+CD WDNLG LT +R + L    ++ E +D L+LEYAK+A+PF+NWM
Sbjct:  435 KKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWM 525
The following BLAST results are available for this feature:
BLAST of TCONS_00007644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTN15.609e-3362.64Alpha-actinin-1 OS=Homo sapiens GN=ACTN1 PE=1 SV=2[more]
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