TCONS_00007648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007648
Unique NameTCONS_00007648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length724

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007648 ID=TCONS_00007648|Name=TCONS_00007648|organism=Clytia hemisphaerica|type=transcript|length=724bp
GGCTGCCACTTCGATACACTTTGAAGAAGGTGTGTTTGTGGAGTGATGGG
TGTTCGTCGCAATTTCGCTCGCGGTTCACATTCGCACTGCTACCTAAACT
GCATCCTGATAAGCTGATAGAGTGGCACTACAACGAGGCCTCTCATGGCA
AAGGCCCTATGGATGGAGTTGGTGGAACGataaaaaataaagtctttcGA
GAGGTCAAATCGTTACGAATTGTTGTCAACTCGCCACGAGACTTCGCCGA
TCATGCAAATCGCCTCTGTTAGTCGGTGACTACAGTGTACCTgccaaaaa
gtgatttttttgaagaGCCCCAGGAAATCGAAGAAGCACAATACATAAAC
GGGACTCTAACGATCCACAAGACCATCCGTAAAGTAAATCCTCAAGGGAT
CGCATTCTTGGAATTTTATCGTCTATCGTCCGACGAACAACCATTTTTTA
CCCAATACTACAGGAAGGCCAACGATCCCGTAGTCTGTGGTCATAAAACA
TCTGCTGATGGTCCAAACATCTATGCCCAATGTTCAAAGAAGTACAGTGA
TGGTGGAGAATGGATGGAGTGTCCCTCCTGCAAACAGTGGTACTGTACTG
ATGAGTGCTTTTCAGTTTAAAGGTCCGGGCTTTTTTCTGTCGGACGCACA
TTTTTATTTCGATGTAGATAGTACTTTTGAGCATTTGCgaaagaaattcc
gaaaataAAGTATTATAATACACA
Run BLAST on NCBI

transcript from alignment at sc0000078:103791..104514

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007648 ID=TCONS_00007648|Name=TCONS_00007648|organism=Clytia hemisphaerica|type=transcript|length=724bp|location=Sequence derived from alignment at sc0000078:103791..104514 (Clytia hemisphaerica)
TGTGTATTATAATACTTtattttcggaatttctttcGCAAATGCTCAAAA
GTACTATCTACATCGAAATAAAAATGTGCGTCCGACAGAAAAAAGCCCGG
ACCTTTAAACTGAAAAGCACTCATCAGTACAGTACCACTGTTTGCAGGAG
GGACACTCCATCCATTCTCCACCATCACTGTACTTCTTTGAACATTGGGC
ATAGATGTTTGGACCATCAGCAGATGTTTTATGACCACAGACTACGGGAT
CGTTGGCCTTCCTGTAGTATTGGGTAAAAAATGGTTGTTCGTCGGACGAT
AGACGATAAAATTCCAAGAATGCGATCCCTTGAGGATTTACTTTACGGAT
GGTCTTGTGGATCGTTAGAGTCCCGTTTATGTATTGTGCTTCTTCGATTT
CCTGGGGCtcttcaaaaaaatcactttttggcAGGTACACTGTAGTCACC
GACTAACAGAGGCGATTTGCATGATCGGCGAAGTCTCGTGGCGAGTTGAC
AACAATTCGTAACGATTTGACCTCTCgaaagactttattttttatCGTTC
CACCAACTCCATCCATAGGGCCTTTGCCATGAGAGGCCTCGTTGTAGTGC
CACTCTATCAGCTTATCAGGATGCAGTTTAGGTAGCAGTGCGAATGTGAA
CCGCGAGCGAAATTGCGACGAACACCCATCACTCCACAAACACACCTTCT
TCAAAGTGTATCGAAGTGGCAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004321XLOC_004321Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007648-exon-sc0000078-1491911889:103791..104514TCONS_00007648-exon-sc0000078-1491911889:103791..104514Clytia hemisphaericaexon
TCONS_00007648-exon-sc0000078-1510915933:103791..104514TCONS_00007648-exon-sc0000078-1510915933:103791..104514Clytia hemisphaericaexon
TCONS_00007648-exon-sc0000078-1575043694:103791..104514TCONS_00007648-exon-sc0000078-1575043694:103791..104514Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:103791..104514 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.434935	0.425085	0.53857	0.988519	0.521242	0.284811	8.83271	9.78051	8.44068	3.66164	2.25381	4.71436	1.79002	1.41879	1.29772	2.64354	0.36688	0.47348	0.949889	1.62222	0.587813	0.637903	0.113688	0.37216	0.82072	0.462127	0.228473	0.282812	0.182655	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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