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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007658 ID=TCONS_00007658|Name=TCONS_00007658|organism=Clytia hemisphaerica|type=transcript|length=1604bp
ctctaacagaaaatgtataacatccCACAGTTTTGTGGGCTGTATCAAAT
AGAACTTTACATGGCAAATATAAAAAGTTCACTAtggccagagcccttaa
gtgcaAGAATATTTGGTGCGTCATTGAAGTCCAAGTTCCATATTTACAGA
ATAAACACAACTGAAATGATATATCAATCAGAGCACTTCTTAACGTTTGT
CCTGACGAAATTTGCTTTCAAATCACACTTTAGGATGAAGACAAGACAAT
GAATCAAATTTATTCATGGGTTAGTTTGGATTCATGGACTGaccgaaaat
atttttacgtATTTTGGCATTCGATCGAAACCGGATGGTCGGACAAAGTT
AGTTTCGTATGGAAATGACAATTACTGTAATTATATCATCCTGAATGAGT
TATTAATGGAATTTAGTACAACAAACCACGTTGATTATCAAAAGCCAATT
ATAGCCTACAAATTAACCACGACTATACGCAACATTGGCGCGCGGCCTGT
ACGCGTCATTCCTATTCGTCCGCCATTCGTGAGAGCGAGAAATACAAAAA
GGGAAGACTTTTACATTTTTGTGTACGTGAAAAACGGACAATTTAATAGA
CGACAAGCCAAGCTAATAACCTGTATCCTGTGTGAAGTTTTTTCTAAATG
GCAGTTTCGTTTTTGGTGATATTTATTTTGCTGATGTTGCAAGGTGAAGT
TGTGGAAACGAGACCTGGATTTCGCTTCTTTGCGACAACCACTACGACAA
CTCCACGTACGAGACTACCCACACAAACCATCTGTAAAAACGGTATCCAG
ATGGTGTGCTTGAGGATAAAGAAAACTAGACTTCAAATCTGTACCGTAAA
AACTTCTTCAAAATCTTGTAATTGATGGATTGTGTTTCTTTTATAATGGT
TTTCTTTTgaataaagtgaaaaatattataCCTATACCTACAACAAAGAT
GCTTTTGGATATTGATGAAAGGATATGCTATAGAGACGAAAGAGAGGGTC
GTGAAATAGTCGAAATGCAGTATAAAGTTTACACAATAATGCATAAGGAA
TGGATATTCGACAATCACTTGATCGTTTGTTTACAAAAGTGTGCGACGGA
CATATTTGCTACCTTATGCACTTACAACAGGCGACAAAAATGGAAATATG
TTTAGTTtacattcaaaacaaaacactCATAACTTCAAAACCTGACAATG
GAATAATTGGAACTGGAAACTGAAAATCTCGAAATTTTTCGTCTCTTTCT
ATATTTTAGTCAAATCAATAGCAATGACTGTTCTCCTAAGCAAGGCAAAA
TGGTTAAAGCTCCTTGCCCATGATAATGAAAAACtccttaaatctttttt
atctcAGACATGATTTTCTCTCCTTCTAACTGTTaaccaaaaaactgatt
ttcataCTCCCATCTGATCTGTCAGTCAAGGTCCTTTGTTTTTCCATACA
GACATTTCATGAATACTCTTGAGGACCTCTTGAATTTAGGGATGTCTCAG
AAtttcttgtaaatattttttgacacaTAACCATACGCTTAGAATTTATA
TTTAagtaagattttaaaagaattatcttattaaaaacgaaagaaaaaca
aGAN Run BLAST on NCBI transcript from alignment at sc0000078:272012..273615 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007658 ID=TCONS_00007658|Name=TCONS_00007658|organism=Clytia hemisphaerica|type=transcript|length=1604bp|location=Sequence derived from alignment at sc0000078:272012..273615 (Clytia hemisphaerica)
NTCttgtttttctttcgtttttaataagataattcttttaaaatcttact
TAAATATAAATTCTAAGCGTATGGTTAtgtgtcaaaaaatatttacaaga
aaTTCTGAGACATCCCTAAATTCAAGAGGTCCTCAAGAGTATTCATGAAA
TGTCTGTATGGAAAAACAAAGGACCTTGACTGACAGATCAGATGGGAGta
tgaaaatcagttttttggttAACAGTTAGAAGGAGAGAAAATCATGTCTg
agataaaaaagatttaaggaGTTTTTCATTATCATGGGCAAGGAGCTTTA
ACCATTTTGCCTTGCTTAGGAGAACAGTCATTGCTATTGATTTGACTAAA
ATATAGAAAGAGACGAAAAATTTCGAGATTTTCAGTTTCCAGTTCCAATT
ATTCCATTGTCAGGTTTTGAAGTTATGagtgttttgttttgaatgtaAAC
TAAACATATTTCCATTTTTGTCGCCTGTTGTAAGTGCATAAGGTAGCAAA
TATGTCCGTCGCACACTTTTGTAAACAAACGATCAAGTGATTGTCGAATA
TCCATTCCTTATGCATTATTGTGTAAACTTTATACTGCATTTCGACTATT
TCACGACCCTCTCTTTCGTCTCTATAGCATATCCTTTCATCAATATCCAA
AAGCATCTTTGTTGTAGGTATAGGtataatatttttcactttattcAAAA
GAAAACCATTATAAAAGAAACACAATCCATCAATTACAAGATTTTGAAGA
AGTTTTTACGGTACAGATTTGAAGTCTAGTTTTCTTTATCCTCAAGCACA
CCATCTGGATACCGTTTTTACAGATGGTTTGTGTGGGTAGTCTCGTACGT
GGAGTTGTCGTAGTGGTTGTCGCAAAGAAGCGAAATCCAGGTCTCGTTTC
CACAACTTCACCTTGCAACATCAGCAAAATAAATATCACCAAAAACGAAA
CTGCCATTTAGAAAAAACTTCACACAGGATACAGGTTATTAGCTTGGCTT
GTCGTCTATTAAATTGTCCGTTTTTCACGTACACAAAAATGTAAAAGTCT
TCCCTTTTTGTATTTCTCGCTCTCACGAATGGCGGACGAATAGGAATGAC
GCGTACAGGCCGCGCGCCAATGTTGCGTATAGTCGTGGTTAATTTGTAGG
CTATAATTGGCTTTTGATAATCAACGTGGTTTGTTGTACTAAATTCCATT
AATAACTCATTCAGGATGATATAATTACAGTAATTGTCATTTCCATACGA
AACTAACTTTGTCCGACCATCCGGTTTCGATCGAATGCCAAAATacgtaa
aaatattttcggtCAGTCCATGAATCCAAACTAACCCATGAATAAATTTG
ATTCATTGTCTTGTCTTCATCCTAAAGTGTGATTTGAAAGCAAATTTCGT
CAGGACAAACGTTAAGAAGTGCTCTGATTGATATATCATTTCAGTTGTGT
TTATTCTGTAAATATGGAACTTGGACTTCAATGACGCACCAAATATTCTt
gcacttaagggctctggccaTAGTGAACTTTTTATATTTGCCATGTAAAG
TTCTATTTGATACAGCCCACAAAACTGTGggatgttatacattttctgtt
agag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007658-exon-sc0000078-1491911889:272012..273615 | TCONS_00007658-exon-sc0000078-1491911889:272012..273615 | Clytia hemisphaerica | exon |
| TCONS_00007658-exon-sc0000078-1510915933:272012..273615 | TCONS_00007658-exon-sc0000078-1510915933:272012..273615 | Clytia hemisphaerica | exon |
| TCONS_00007658-exon-sc0000078-1575043694:272012..273615 | TCONS_00007658-exon-sc0000078-1575043694:272012..273615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:272012..273615 . |
Blast
The following BLAST results are available for this feature:
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