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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007670 ID=TCONS_00007670|Name=TCONS_00007670|organism=Clytia hemisphaerica|type=transcript|length=1951bp
TTTATAAgaggttttttattttgtgcGTAGAGGTAGAAAGCTCATTAAGC
AAAGTTCGAGTTTACAAAATTTATTGGACGGCTTTCAAAATGGATAATGC
GCTACGAAATTTTGTCACCATGAACGCACAAGACGACATGCGAGAACACA
ACGCTCATGGCGAACGGAGGGTTGATGAACACAATGCTCACGGCGTGCGA
GAAGATGATAATCATCAAGCTGTTGCTGCTGAACCACAATTGGAAGAAAA
TGGTAGTGCGCATGTGcagaatgaaatgaaaaagcTGAAGGATGaagtcg
aaaaattgaaaagagagAAAGACCTTGAGAAATTGAAATTCGAAAAGGAC
CAGCTCaaaagtgagaaagaaaatgaagGCTTGAAAGCTACTGTGGACAA
AATGAAACTTGAAAACGAACAAGTAAAGAAAGATTTTGAGATGGAGAAGC
TGAAAGCTGAAGTTGCTTTgttgaaaactgaaaaacagTTCGGATTGGAT
GCGAAAGTGGTCTTAGAACAAAAGTTGAAGGTTGAGGAAGAACTGAGAGT
TgttaaaactgaaaatgaaaagtttgatAAAGATACCAAAGCTTTGAGGG
ATGAGttgatgaaattaaaaaatgaaaacaagggATACGAACTCGAAAAG
AACAACCTGCTCCAGGAAAAGGGTCTCATCGAAAAGAAATACAAGACTTT
GCAAAGCGAGAACCTGAACATTGAAAATCAGTTGAAAGCATCAACACTAG
AAATCGACAGATTAACGAAAGATGTCCGAAAAAACGAACGAATATCTGGC
GATTCGaacgaaaaatgtaaacagcTGGAAATTGATGTTCTAAATCTAAG
AAAGGGACTGAAAGATTCGACAGACGCAAAAATAAGATCTGAAAAGCTTT
ATCAGGAGGTCAAAGCcgaaaataaaaagattatgCAGGATAAGAAAATG
CTTGAAGGAAGATTGAATGACCTTCAGGAGGCAAACCAACGATTACAAAA
TGACAGGATTGAAGCCAACGGAAAGAGCCTTTTTGCACCACCAAAGATAG
AAGCTTCGAAGAGAAGTGATTTCAGCATGATGTCAACGGAAGATGTTATA
TCAATTGGCTCTCATATGGTTTTCGAAATTAAATTTTGTTCCAATTATGA
AAGTTGGTATAATGTTCTACGACAAAGAATCGGTGTTAAGAAGACTGTTT
GCTCGAAGAACTGTTTAGTCACTAAACGACGTGGCAGTCGTTCTGGGTTC
TTTATGTTTAATATCGACATTGCTGCTTTGGTCAGCAATCCAAGAGAATG
GCGTCACGAAAAAGAAGTGCTCCATCCAAAGAATAACATGAAAATACTAG
ACATACATTATAATGAGAGTACCGGTAAATGGTGGACTCGTTATGATAAT
CTACGTGATTACCATGCAGGTGATGCCCAGCCCCTTTTTTTCGTTATGAA
AAAACAATAACTGTGAATGTTTGTAGATGGTTGAGTTTTACGTTAGCGTC
ATTCAGAAACTTGTTAACAAAATCGATATCTTCTTGATTGCCATTTTTAT
GGTCCACATAGACAGATGTTAGCGCCCATCGTTAGCAGATTAGTATTTTC
TGTAAAACCTTTGTTCAAAAAACATATTCAACTGGCATGTCGGTACACCA
GTGCAGGCATAATATAACATtttgtcaagatttttttatgaaattatgCT
AAATTAAAGTCTgcctcaatataatttgcagtaGTGACAAAAAaaagcta
taacttttgatagaacttGAACTAAATaccggttttgtgctcgttaaaaa
gataatccgaagtggaatattatcaagaaagagaaaaagaaaaaaatagg
gaaatgaaaatgaaaaatgaagaagaagaaaatcaagttcTTGTAGAATA
GTGCTTCATTTTTATAtcagaaactcttcaatcttaaaacGTAATAAAGG
C Run BLAST on NCBI protein sequence of TCONS_00007670-protein >TCONS_00007670-protein ID=TCONS_00007670-protein|Name=TCONS_00007670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=485bp
YKRFFILCVEVESSLSKVRVYKIYWTAFKMDNALRNFVTMNAQDDMREHN
AHGERRVDEHNAHGVREDDNHQAVAAEPQLEENGSAHVQNEMKKLKDEVE
KLKREKDLEKLKFEKDQLKSEKENEGLKATVDKMKLENEQVKKDFEMEKL
KAEVALLKTEKQFGLDAKVVLEQKLKVEEELRVVKTENEKFDKDTKALRD
ELMKLKNENKGYELEKNNLLQEKGLIEKKYKTLQSENLNIENQLKASTLE
IDRLTKDVRKNERISGDSNEKCKQLEIDVLNLRKGLKDSTDAKIRSEKLY
QEVKAENKKIMQDKKMLEGRLNDLQEANQRLQNDRIEANGKSLFAPPKIE
ASKRSDFSMMSTEDVISIGSHMVFEIKFCSNYESWYNVLRQRIGVKKTVC
SKNCLVTKRRGSRSGFFMFNIDIAALVSNPREWRHEKEVLHPKNNMKILD
IHYNESTGKWWTRYDNLRDYHAGDAQPLFFVMKKQ Run BLAST on NCBI transcript from alignment at sc0000078:612220..614170 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007670 ID=TCONS_00007670|Name=TCONS_00007670|organism=Clytia hemisphaerica|type=transcript|length=1951bp|location=Sequence derived from alignment at sc0000078:612220..614170 (Clytia hemisphaerica)
GCCTTTATTACgttttaagattgaagagtttctgaTATAAAAATGAAGCA
CTATTCTACAAgaacttgattttcttcttcttcatttttcattttcattt
ccctatttttttctttttctctttcttgataatattccacttcggattat
ctttttaacgagcacaaaaccggtATTTAGTTCaagttctatcaaaagtt
atagctttTTTTTGTCACtactgcaaattatattgaggcAGACTTTAATT
TAGcataatttcataaaaaaatcttgacaaaATGTTATATTATGCCTGCA
CTGGTGTACCGACATGCCAGTTGAATATGTTTTTTGAACAAAGGTTTTAC
AGAAAATACTAATCTGCTAACGATGGGCGCTAACATCTGTCTATGTGGAC
CATAAAAATGGCAATCAAGAAGATATCGATTTTGTTAACAAGTTTCTGAA
TGACGCTAACGTAAAACTCAACCATCTACAAACATTCACAGTTATTGTTT
TTTCATAACGAAAAAAAGGGGCTGGGCATCACCTGCATGGTAATCACGTA
GATTATCATAACGAGTCCACCATTTACCGGTACTCTCATTATAATGTATG
TCTAGTATTTTCATGTTATTCTTTGGATGGAGCACTTCTTTTTCGTGACG
CCATTCTCTTGGATTGCTGACCAAAGCAGCAATGTCGATATTAAACATAA
AGAACCCAGAACGACTGCCACGTCGTTTAGTGACTAAACAGTTCTTCGAG
CAAACAGTCTTCTTAACACCGATTCTTTGTCGTAGAACATTATACCAACT
TTCATAATTGGAACAAAATTTAATTTCGAAAACCATATGAGAGCCAATTG
ATATAACATCTTCCGTTGACATCATGCTGAAATCACTTCTCTTCGAAGCT
TCTATCTTTGGTGGTGCAAAAAGGCTCTTTCCGTTGGCTTCAATCCTGTC
ATTTTGTAATCGTTGGTTTGCCTCCTGAAGGTCATTCAATCTTCCTTCAA
GCATTTTCTTATCCTGcataatctttttattttcgGCTTTGACCTCCTGA
TAAAGCTTTTCAGATCTTATTTTTGCGTCTGTCGAATCTTTCAGTCCCTT
TCTTAGATTTAGAACATCAATTTCCAgctgtttacatttttcgttCGAAT
CGCCAGATATTCGTTCGTTTTTTCGGACATCTTTCGTTAATCTGTCGATT
TCTAGTGTTGATGCTTTCAACTGATTTTCAATGTTCAGGTTCTCGCTTTG
CAAAGTCTTGTATTTCTTTTCGATGAGACCCTTTTCCTGGAGCAGGTTGT
TCTTTTCGAGTTCGTATcccttgttttcattttttaatttcatcaaCTCA
TCCCTCAAAGCTTTGGTATCTTTatcaaacttttcattttcagttttaac
AACTCTCAGTTCTTCCTCAACCTTCAACTTTTGTTCTAAGACCACTTTCG
CATCCAATCCGAActgtttttcagttttcaacAAAGCAACTTCAGCTTTC
AGCTTCTCCATCTCAAAATCTTTCTTTACTTGTTCGTTTTCAAGTTTCAT
TTTGTCCACAGTAGCTTTCAAGCcttcattttctttctcacttttGAGCT
GGTCCTTTTCGAATTTCAATTTCTCAAGGTCTTTctctcttttcaatttt
tcgacttCATCCTTCAgctttttcatttcattctgCACATGCGCACTACC
ATTTTCTTCCAATTGTGGTTCAGCAGCAACAGCTTGATGATTATCATCTT
CTCGCACGCCGTGAGCATTGTGTTCATCAACCCTCCGTTCGCCATGAGCG
TTGTGTTCTCGCATGTCGTCTTGTGCGTTCATGGTGACAAAATTTCGTAG
CGCATTATCCATTTTGAAAGCCGTCCAATAAATTTTGTAAACTCGAACTT
TGCTTAATGAGCTTTCTACCTCTACgcacaaaataaaaaacctcTTATAA
A Coding sequence (CDS) from alignment at sc0000078:612220..614170 >TCONS_00007670 ID=TCONS_00007670|Name=TCONS_00007670|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000078:612220..614170 (Clytia hemisphaerica)
TTATTGTTTTTTCATAACGAAAAAAAGGGGCTGGGCATCACCTGCATGGT
AATCACGTAGATTATCATAACGAGTCCACCATTTACCGGTACTCTCATTA
TAATGTATGTCTAGTATTTTCATGTTATTCTTTGGATGGAGCACTTCTTT
TTCGTGACGCCATTCTCTTGGATTGCTGACCAAAGCAGCAATGTCGATAT
TAAACATAAAGAACCCAGAACGACTGCCACGTCGTTTAGTGACTAAACAG
TTCTTCGAGCAAACAGTCTTCTTAACACCGATTCTTTGTCGTAGAACATT
ATACCAACTTTCATAATTGGAACAAAATTTAATTTCGAAAACCATATGAG
AGCCAATTGATATAACATCTTCCGTTGACATCATGCTGAAATCACTTCTC
TTCGAAGCTTCTATCTTTGGTGGTGCAAAAAGGCTCTTTCCGTTGGCTTC
AATCCTGTCATTTTGTAATCGTTGGTTTGCCTCCTGAAGGTCATTCAATC
TTCCTTCAAGCATTTTCTTATCCTGcataatctttttattttcgGCTTTG
ACCTCCTGATAAAGCTTTTCAGATCTTATTTTTGCGTCTGTCGAATCTTT
CAGTCCCTTTCTTAGATTTAGAACATCAATTTCCAgctgtttacattttt
cgttCGAATCGCCAGATATTCGTTCGTTTTTTCGGACATCTTTCGTTAAT
CTGTCGATTTCTAGTGTTGATGCTTTCAACTGATTTTCAATGTTCAGGTT
CTCGCTTTGCAAAGTCTTGTATTTCTTTTCGATGAGACCCTTTTCCTGGA
GCAGGTTGTTCTTTTCGAGTTCGTATcccttgttttcattttttaatttc
atcaaCTCATCCCTCAAAGCTTTGGTATCTTTatcaaacttttcattttc
agttttaacAACTCTCAGTTCTTCCTCAACCTTCAACTTTTGTTCTAAGA
CCACTTTCGCATCCAATCCGAActgtttttcagttttcaacAAAGCAACT
TCAGCTTTCAGCTTCTCCATCTCAAAATCTTTCTTTACTTGTTCGTTTTC
AAGTTTCATTTTGTCCACAGTAGCTTTCAAGCcttcattttctttctcac
ttttGAGCTGGTCCTTTTCGAATTTCAATTTCTCAAGGTCTTTctctctt
ttcaatttttcgacttCATCCTTCAgctttttcatttcattctgCACATG
CGCACTACCATTTTCTTCCAATTGTGGTTCAGCAGCAACAGCTTGATGAT
TATCATCTTCTCGCACGCCGTGAGCATTGTGTTCATCAACCCTCCGTTCG
CCATGAGCGTTGTGTTCTCGCATGTCGTCTTGTGCGTTCATGGTGACAAA
ATTTCGTAGCGCATTATCCATTTTGAAAGCCGTCCAATAAATTTTGTAAA
CTCGAACTTTGCTTAATGAGCTTTCTACCTCTACgcacaaaataaaaaac
ctcTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007670-exon-sc0000078-1491911889:612220..614170 | TCONS_00007670-exon-sc0000078-1491911889:612220..614170 | Clytia hemisphaerica | exon |
| TCONS_00007670-exon-sc0000078-1510915933:612220..614170 | TCONS_00007670-exon-sc0000078-1510915933:612220..614170 | Clytia hemisphaerica | exon |
| TCONS_00007670-exon-sc0000078-1575043694:612220..614170 | TCONS_00007670-exon-sc0000078-1575043694:612220..614170 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000078 | supercontig | sc0000078:612220..614170 . |
Blast
The following BLAST results are available for this feature:
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