TCONS_00007671 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007671
Unique NameTCONS_00007671
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007671 ID=TCONS_00007671|Name=TCONS_00007671|organism=Clytia hemisphaerica|type=transcript|length=686bp
TGTTCTTCGACAAAGAATCGGTGTTAAGGAGACTGTTTGCTCGAAGAACT
GTTTAGTCACTAAACAACGTGACAGTATTTGGGTGTTTTGTATCGACATT
GCTGATTTGGTCAACAATCCAAGAGAATGGAGTCACGAAAAAGTGAGGTT
TGCGAAATTGCTCCATCCAAAGAATAACATGGAAATAAAAGACATACATT
ATAATGAGGGTACTGGTAAATGGTGGACTACTTCTCAGCGTCTACGTGAT
TACTATGTAGATGATTGCGAGTTCGTTTGTTTCGTAATGAAAAAACAATA
ACTGTGAATGTTTGTAGATGGTTGAATTTTACGTTGGCGTCATTCAGAAA
CTTCTTAACGAAATCGATATCTTCTTGATTTCCATTTTCATGGTCCACAT
AGACAGATGTTAGTGTCCACCGTTGGCAGATTAGTATTCTCTGTAAAACT
TTTGCTCAAAAATCATATTCAACTGGCATGTCGGTACACCAGTGCAGGTA
TAATATAACATTTTGTCacgattttttatgaaattatgCTAAATCaaagt
ctcaatataatttgtaGTAGAGACAAAaaagctataacttttgatagaat
ttgaattaaatatcggttttgtgctcgttaaaaagataatccgaagtgga
atattatcaagaaaaagaaaaagaaaaaaataggga
Run BLAST on NCBI

protein sequence of TCONS_00007671-protein

>TCONS_00007671-protein ID=TCONS_00007671-protein|Name=TCONS_00007671-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
VLRQRIGVKETVCSKNCLVTKQRDSIWVFCIDIADLVNNPREWSHEKVRF
AKLLHPKNNMEIKDIHYNEGTGKWWTTSQRLRDYYVDDCEFVCFVMKKQ
Run BLAST on NCBI

transcript from alignment at sc0000078:615914..616599

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007671 ID=TCONS_00007671|Name=TCONS_00007671|organism=Clytia hemisphaerica|type=transcript|length=686bp|location=Sequence derived from alignment at sc0000078:615914..616599 (Clytia hemisphaerica)
tccctatttttttctttttctttttcttgataatattccacttcggatta
tctttttaacgagcacaaaaccgatatttaattcaaattctatcaaaagt
tatagctttTTTGTCTCTACtacaaattatattgagactttGATTTAGca
taatttcataaaaaatcgtGACAAAATGTTATATTATACCTGCACTGGTG
TACCGACATGCCAGTTGAATATGATTTTTGAGCAAAAGTTTTACAGAGAA
TACTAATCTGCCAACGGTGGACACTAACATCTGTCTATGTGGACCATGAA
AATGGAAATCAAGAAGATATCGATTTCGTTAAGAAGTTTCTGAATGACGC
CAACGTAAAATTCAACCATCTACAAACATTCACAGTTATTGTTTTTTCAT
TACGAAACAAACGAACTCGCAATCATCTACATAGTAATCACGTAGACGCT
GAGAAGTAGTCCACCATTTACCAGTACCCTCATTATAATGTATGTCTTTT
ATTTCCATGTTATTCTTTGGATGGAGCAATTTCGCAAACCTCACTTTTTC
GTGACTCCATTCTCTTGGATTGTTGACCAAATCAGCAATGTCGATACAAA
ACACCCAAATACTGTCACGTTGTTTAGTGACTAAACAGTTCTTCGAGCAA
ACAGTCTCCTTAACACCGATTCTTTGTCGAAGAACA

Coding sequence (CDS) from alignment at sc0000078:615914..616599

>TCONS_00007671 ID=TCONS_00007671|Name=TCONS_00007671|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000078:615914..616599 (Clytia hemisphaerica)
TTATTGTTTTTTCATTACGAAACAAACGAACTCGCAATCATCTACATAGT
AATCACGTAGACGCTGAGAAGTAGTCCACCATTTACCAGTACCCTCATTA
TAATGTATGTCTTTTATTTCCATGTTATTCTTTGGATGGAGCAATTTCGC
AAACCTCACTTTTTCGTGACTCCATTCTCTTGGATTGTTGACCAAATCAG
CAATGTCGATACAAAACACCCAAATACTGTCACGTTGTTTAGTGACTAAA
CAGTTCTTCGAGCAAACAGTCTCCTTAACACCGATTCTTTGTCGAAGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004344XLOC_004344Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007671-proteinTCONS_00007671-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007671-exon-sc0000078-1491911889:615914..616599TCONS_00007671-exon-sc0000078-1491911889:615914..616599Clytia hemisphaericaexon
TCONS_00007671-exon-sc0000078-1510915933:615914..616599TCONS_00007671-exon-sc0000078-1510915933:615914..616599Clytia hemisphaericaexon
TCONS_00007671-exon-sc0000078-1575043694:615914..616599TCONS_00007671-exon-sc0000078-1575043694:615914..616599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000078supercontigsc0000078:615914..616599 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.137576	0.15901	0.1804	0	0	0	0.394136	0	0	0.193928	0.0654345	4.1575	5.72289	1.4103	1.42211	1.31253	2.28172	2.99831	3.15203	0.948445	1.143	0.569971	0.261427	1.7261	3.11951	0	0.108842	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007671 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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