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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007672 ID=TCONS_00007672|Name=TCONS_00007672|organism=Clytia hemisphaerica|type=transcript|length=3013bp
AATCCGTGCGATTTTGTCTGAATAACTAagacaaatgaaaacaaaaacaa
acttcgcaatgtggtggcggattgcccctttatggcttacaattttgcct
gagAACACAGAAAATCGCTAATTACTCAAAAAGTGCgtgttttcaagctt
ggtaacatttaaattccaaatcagcaccctcaaattgactaggaaacata
tcaaaaagtttgtcacagacattttgaaaaaaagtgaaactttttcTGGC
CACGGCCTAGTACACTGTATAGCAActgctttcaaaacttttgaatacAG
TAACACCAcagtagtaagtgtcatactgtcttgtagtaactgtgTGCCCC
CTGAACATCGttacaaaagttatatttttgatttcccaaacatttgtttt
gagcgttcacttccacaataatttatgttaTTACACTTTCGGTCAGTGGG
ATTCATCATATTTAGTCATATGACTGAATTGCCTACTAAAATATCCCGGG
GGTAAGTGTCGAAGGAAAACAGATTTTTCTTAAAGTGAAGAAGTATCTTT
TCACATTGTTGACAatcatttttatataatatcaatagccgtagtctgta
tgtctgtttgttttctgtctgtgtgtcactttcgttttcgcaagcaatgt
ttttgttttcgataagttttgattgaaagatcggatagagcttttattta
gcctttgttttgaaatttaaggcccatctacaatTAGTCATTTTAATCTC
TGCCTTGGCTTACCCAcccctttgtttttctcttttttttgtttcaaatg
ttttcaaatgtaattaacgatcctatttattaatgacattcgacactttt
caaaacaaaaaaaaacctcttaatgaaaaaaacatttcaaatgtaaatca
aaacatagaaataaaaaagtttgtcaaaaaCAACAGCATTCACGGTATAA
TTTTAATAACGATAGCTTTCTCATAGCTTTtgatttaaacaaaaaattac
gtCACAGGGACAATACAAAATCCattatggttaaaagataagacacctGG
GGGAGGGCTAGAGTCAAAAGTTGaagatatttctttttttttacttatta
tACTTTTATGCCAGCTCTAACAACCAAATGACGACATTTGGTgtgttcag
ctacagcttaaatTTTACATACCAAAACGCCCCTGGCTTTTAGCCTAGTC
TAATTAGAATATAATCTTCtaagctttttttaatttttctaaatctattt
taattttgatttgcaTCCAGTTGACTCTGAATGATTTGTTTAACCCCAGT
AATGCAGAAGCAATTAATCTTTTTAGgaataatttaagaaataaaCATTG
TAAAATGTATCAAGTTCAGTCACTGAAAGGTTTAAGCACAACATCCCTCA
TCAAAGACATTAACAAAGAAAATGCACTAGAATACTTTCTTATTGCAACA
AAGTTTAATGTTGAACGTCTTTCCGACAAATGTTGCAAGAAAATTGCCAT
AAAACAGACCTCAAACAGTAATGAATTCAAAGAACTTCCCTTGAAGTATT
TGAAAGCCTTACTTTCTCATCCCTATTTCAATCCACCCGAGGATGATAAG
TACCGAGCTGTCGTCAAGTGGCTACAGTATGACCAAACCAATAGACAGAT
CCACTTTGATGATGTAATGTCACTATTTTGCTATCACAAATTATCAAGTA
AGTTTTCATATCAACAAATGCATAAGCTTTATCAGAAAAATGGGAGAAAG
AGAAGCTATGGTGAAGTCTGTTCTGGATATTTGGGATGCCCTGAGAACCA
TATCAAAGAACCCAGTACTCTTGAAGAGCTCAAAGCTTTATTTGGAAATC
GATGTATTCAATTGTCTGAAAACTTGCACATGGtaaattcttttaaatat
aAATATGGTTCATTAGGAAGAAAGGTTCCCAAAGAAATGAACAAGTTGAG
AATTGGAATTCAAAGAGGTTGTCATGCAGGAAATTACACAAAGAATTCCT
TAGAGCAAGAAATAATGTTTGGAGATCATCATGTGGaagtcttttttcaa
aatacaaaagatGCTGATCACACATTTATTGTGACAGGGGATTATAATAT
TCAAAGAGGTTGTTATAATTTTGTGCAACTCCCTAAGGTTTGTTTGATTC
TGGGTTTACAACCTAAAGCTCCTCCTAACCCAGAACTTACACACAAAACA
GATCCTAGTAAAGATACTGGACGAATGCTTAGATATCCTATGGTGTGTGT
CATTGGAGGCTCAGAGGTTGACATGGATGATGCTATTCGTTTTGCTTGTT
CTTTGAATCTAAGGAATCATCGCTGTGATATATGTCAAAGAATTGATAAA
GATAATTATAGATTTATGAACATCTGGTCAGCATCTGCAAAAAAAGTTAG
ATATCAACACttaaatcattaaattttttttcattgcttCATATCATTTG
GGTtgattttgtttacaatttttgtCATCATGAAacacaaattttctttt
ttatgttaGCATTTTTTATGATATTATACTATTTTTGTATTCGGTTTCTT
TCCCTGTTTACCTTATTCTCTATGAAATCTGATGAAATTATAAAAGTCTA
AGAAATAAGGAAACActcttttctttgaaatttacaCAATCATTTAAATA
TTTGTTGTTTCATTCAGCTAtgataaagtctgtctcaatataatttctca
atataatttcttttttaaatgatattccactccggattatcttttcaaca
agcacaaaaccacTATCTAATTAGAATTCTAACAAAAGTGACAacttttt
ttgtctccgctgcaaattatattgagacagactttaattgacATATAACT
TTGACAGAAATaatattgttttgatttgtttgttattttgatatttctta
tattACTATATTTTCATTAATTGATTTTATTTGTTCTAGGGTTGAGAAAT
ACTTACTGTTgtgttagaaatcgttattctttattttctctttcaaagaa
aaattgagtCTGA Run BLAST on NCBI protein sequence of TCONS_00007672-protein >TCONS_00007672-protein ID=TCONS_00007672-protein|Name=TCONS_00007672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MYQVQSLKGLSTTSLIKDINKENALEYFLIATKFNVERLSDKCCKKIAIK
QTSNSNEFKELPLKYLKALLSHPYFNPPEDDKYRAVVKWLQYDQTNRQIH
FDDVMSLFCYHKLSSKFSYQQMHKLYQKNGRKRSYGEVCSGYLGCPENHI
KEPSTLEELKALFGNRCIQLSENLHMVNSFKYKYGSLGRKVPKEMNKLRI
GIQRGCHAGNYTKNSLEQEIMFGDHHVEVFFQNTKDADHTFIVTGDYNIQ
RGCYNFVQLPKVCLILGLQPKAPPNPELTHKTDPSKDTGRMLRYPMVCVI
GGSEVDMDDAIRFACSLNLRNHRCDICQRIDKDNYRFMNIWSASAKKVRY
QHLNH Run BLAST on NCBI transcript from alignment at sc0000078:633363..636375 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007672 ID=TCONS_00007672|Name=TCONS_00007672|organism=Clytia hemisphaerica|type=transcript|length=3013bp|location=Sequence derived from alignment at sc0000078:633363..636375 (Clytia hemisphaerica)
TCAGactcaatttttctttgaaagagaaaataaagaataacgatttctaa
cacAACAGTAAGTATTTCTCAACCCTAGAACAAATAAAATCAATTAATGA
AAATATAGTaatataagaaatatcaaaataacaaacaaatcaaaacaata
ttATTTCTGTCAAAGTTATATgtcaattaaagtctgtctcaatataattt
gcagcggagacaaaaaaagtTGTCACTTTTGTTAGAATTCTAATTAGATA
gtggttttgtgcttgttgaaaagataatccggagtggaatatcatttaaa
aaagaaattatattgagaaattatattgagacagactttatcaTAGCTGA
ATGAAACAACAAATATTTAAATGATTGtgtaaatttcaaagaaaagagTG
TTTCCTTATTTCTTAGACTTTTATAATTTCATCAGATTTCATAGAGAATA
AGGTAAACAGGGAAAGAAACCGAATACAAAAATAGTATAATATCATAAAA
AATGCtaacataaaaaagaaaatttgtgtTTCATGATGacaaaaattgta
aacaaaatcaACCCAAATGATATGaagcaatgaaaaaaaatttaatgatt
taaGTGTTGATATCTAACTTTTTTTGCAGATGCTGACCAGATGTTCATAA
ATCTATAATTATCTTTATCAATTCTTTGACATATATCACAGCGATGATTC
CTTAGATTCAAAGAACAAGCAAAACGAATAGCATCATCCATGTCAACCTC
TGAGCCTCCAATGACACACACCATAGGATATCTAAGCATTCGTCCAGTAT
CTTTACTAGGATCTGTTTTGTGTGTAAGTTCTGGGTTAGGAGGAGCTTTA
GGTTGTAAACCCAGAATCAAACAAACCTTAGGGAGTTGCACAAAATTATA
ACAACCTCTTTGAATATTATAATCCCCTGTCACAATAAATGTGTGATCAG
CatcttttgtattttgaaaaaagacttCCACATGATGATCTCCAAACATT
ATTTCTTGCTCTAAGGAATTCTTTGTGTAATTTCCTGCATGACAACCTCT
TTGAATTCCAATTCTCAACTTGTTCATTTCTTTGGGAACCTTTCTTCCTA
ATGAACCATATTtatatttaaaagaatttaCCATGTGCAAGTTTTCAGAC
AATTGAATACATCGATTTCCAAATAAAGCTTTGAGCTCTTCAAGAGTACT
GGGTTCTTTGATATGGTTCTCAGGGCATCCCAAATATCCAGAACAGACTT
CACCATAGCTTCTCTTTCTCCCATTTTTCTGATAAAGCTTATGCATTTGT
TGATATGAAAACTTACTTGATAATTTGTGATAGCAAAATAGTGACATTAC
ATCATCAAAGTGGATCTGTCTATTGGTTTGGTCATACTGTAGCCACTTGA
CGACAGCTCGGTACTTATCATCCTCGGGTGGATTGAAATAGGGATGAGAA
AGTAAGGCTTTCAAATACTTCAAGGGAAGTTCTTTGAATTCATTACTGTT
TGAGGTCTGTTTTATGGCAATTTTCTTGCAACATTTGTCGGAAAGACGTT
CAACATTAAACTTTGTTGCAATAAGAAAGTATTCTAGTGCATTTTCTTTG
TTAATGTCTTTGATGAGGGATGTTGTGCTTAAACCTTTCAGTGACTGAAC
TTGATACATTTTACAATGtttatttcttaaattattcCTAAAAAGATTAA
TTGCTTCTGCATTACTGGGGTTAAACAAATCATTCAGAGTCAACTGGAtg
caaatcaaaattaaaatagatttagaaaaattaaaaaaagcttaGAAGAT
TATATTCTAATTAGACTAGGCTAAAAGCCAGGGGCGTTTTGGTATGTAAA
atttaagctgtagctgaacacACCAAATGTCGTCATTTGGTTGTTAGAGC
TGGCATAAAAGTataataagtaaaaaaaaagaaatatcttCAACTTTTGA
CTCTAGCCCTCCCCCaggtgtcttatcttttaaccataatGGATTTTGTA
TTGTCCCTGTGacgtaattttttgtttaaatcaAAAGCTATGAGAAAGCT
ATCGTTATTAAAATTATACCGTGAATGCTGTTGtttttgacaaacttttt
tatttctatgttttgatttacatttgaaatgtttttttcattaagaggtt
tttttttgttttgaaaagtgtcgaatgtcattaataaataggatcgttaa
ttacatttgaaaacatttgaaacaaaaaaaagagaaaaacaaaggggTGG
GTAAGCCAAGGCAGAGATTAAAATGACTAattgtagatgggccttaaatt
tcaaaacaaaggctaaataaaagctctatccgatctttcaatcaaaactt
atcgaaaacaaaaacattgcttgcgaaaacgaaagtgacacacagacaga
aaacaaacagacatacagactacggctattgatattatataaaaatgatT
GTCAACAATGTGAAAAGATACTTCTTCACTTTAAGAAAAATCTGTTTTCC
TTCGACACTTACCCCCGGGATATTTTAGTAGGCAATTCAGTCATATGACT
AAATATGATGAATCCCACTGACCGAAAGTGTAAtaacataaattattgtg
gaagtgaacgctcaaaacaaatgtttgggaaatcaaaaatataacttttg
taaCGATGTTCAGGGGGCAcacagttactacaagacagtatgacacttac
tactgTGGTGTTACTgtattcaaaagttttgaaagcagTTGCTATACAGT
GTACTAGGCCGTGGCCAgaaaaagtttcactttttttcaaaatgtctgtg
acaaactttttgatatgtttcctagtcaatttgagggtgctgatttggaa
tttaaatgttaccaagcttgaaaacacGCACTTTTTGAGTAATTAGCGAT
TTTCTGTGTTctcaggcaaaattgtaagccataaaggggcaatccgccac
cacattgcgaagtttgtttttgttttcatttgtctTAGTTATTCAGACAA
AATCGCACGGATT Coding sequence (CDS) from alignment at sc0000078:633363..636375 >TCONS_00007672 ID=TCONS_00007672|Name=TCONS_00007672|organism=Clytia hemisphaerica|type=CDS|length=1068bp|location=Sequence derived from alignment at sc0000078:633363..636375 (Clytia hemisphaerica)
ttaatgatttaaGTGTTGATATCTAACTTTTTTTGCAGATGCTGACCAGA
TGTTCATAAATCTATAATTATCTTTATCAATTCTTTGACATATATCACAG
CGATGATTCCTTAGATTCAAAGAACAAGCAAAACGAATAGCATCATCCAT
GTCAACCTCTGAGCCTCCAATGACACACACCATAGGATATCTAAGCATTC
GTCCAGTATCTTTACTAGGATCTGTTTTGTGTGTAAGTTCTGGGTTAGGA
GGAGCTTTAGGTTGTAAACCCAGAATCAAACAAACCTTAGGGAGTTGCAC
AAAATTATAACAACCTCTTTGAATATTATAATCCCCTGTCACAATAAATG
TGTGATCAGCatcttttgtattttgaaaaaagacttCCACATGATGATCT
CCAAACATTATTTCTTGCTCTAAGGAATTCTTTGTGTAATTTCCTGCATG
ACAACCTCTTTGAATTCCAATTCTCAACTTGTTCATTTCTTTGGGAACCT
TTCTTCCTAATGAACCATATTtatatttaaaagaatttaCCATGTGCAAG
TTTTCAGACAATTGAATACATCGATTTCCAAATAAAGCTTTGAGCTCTTC
AAGAGTACTGGGTTCTTTGATATGGTTCTCAGGGCATCCCAAATATCCAG
AACAGACTTCACCATAGCTTCTCTTTCTCCCATTTTTCTGATAAAGCTTA
TGCATTTGTTGATATGAAAACTTACTTGATAATTTGTGATAGCAAAATAG
TGACATTACATCATCAAAGTGGATCTGTCTATTGGTTTGGTCATACTGTA
GCCACTTGACGACAGCTCGGTACTTATCATCCTCGGGTGGATTGAAATAG
GGATGAGAAAGTAAGGCTTTCAAATACTTCAAGGGAAGTTCTTTGAATTC
ATTACTGTTTGAGGTCTGTTTTATGGCAATTTTCTTGCAACATTTGTCGG
AAAGACGTTCAACATTAAACTTTGTTGCAATAAGAAAGTATTCTAGTGCA
TTTTCTTTGTTAATGTCTTTGATGAGGGATGTTGTGCTTAAACCTTTCAG
TGACTGAACTTGATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007672-exon-sc0000078-1491911889:633363..636375 | TCONS_00007672-exon-sc0000078-1491911889:633363..636375 | Clytia hemisphaerica | exon |
| TCONS_00007672-exon-sc0000078-1510915933:633363..636375 | TCONS_00007672-exon-sc0000078-1510915933:633363..636375 | Clytia hemisphaerica | exon |
| TCONS_00007672-exon-sc0000078-1575043694:633363..636375 | TCONS_00007672-exon-sc0000078-1575043694:633363..636375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000078 | supercontig | sc0000078:633363..636375 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR011705 | BACK |
Blast
The following BLAST results are available for this feature:
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