TCONS_00007693 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007693
Unique Name	TCONS_00007693
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3066

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000079:86383..92344+

transcript sequence

>TCONS_00007693 ID=TCONS_00007693|Name=TCONS_00007693|organism=Clytia hemisphaerica|type=transcript|length=3066bp
GTCCGACCAAAGTATTTGAAACAGCATGGATGTTGCCGATTTGGATTTAG
AGGATGGACTCATGGTAACACCAAGCGAAGCCTACGAATTTACCGTTCAT
TTATACGGCCGCAGTGATAGCACATCAACAAAATGTGTCCTACAGATTCA
CTATCACGAAAAGACTTTATCGTTATTACGTCATGGACAAAAAGTTGAGA
ATTATTTGTTCAGCTCTTTGAGAGATGTCGTCGGAGATGATGAAGTTCCG
AGATTGAAAATACGATTCGATGATTTCAATCAACTTGATATTGAGACTGG
AACATTGGAGAAAAAGAATGAGATTTTTACATTATTAACACAAATCATTG
ATCAACAATATAGATCTGAAGACTCAAAAGAGGATGCCGTCGACCCTAGG
AGCCACACCATCAAAGAAGGGATCCTTGACAAGAATGGCCATGGTCTCTT
CGCCTCCTTCATGTGGCAAGAAAGGTACGTCAAATTGTATCCTGGTCGGA
TGGATTACCATCGTGTCAAGGCAACCAATCATGAAGGTCCTGCTCTGAAT
CAGGTTCGACTAACCTCCAATAAATGCTCTATTCGAGCAGTTGACGAGAA
TACTTTGATACTCGGCACACCGAATAGAGATTATATATTTCGAATGAGAA
AGCATGCTCACGTCGACCCTCGGACTATGCTTAATGACTGGAGATTGGCT
TTTGAGAGAGCAATTCAAAAAGGTTCAAAAGAAGTCAGTTTGGTGGACAA
ACGAAGATTACAACACGAAAACAGATTACCCATCAATAGAGGTAAGGAAG
ACGAAGTACCTCAACCATGTGAAGTCGGAAAGCCTTCGCCAGCAAATGAA
GaaacaaagtttgaaaatgCCCAGAATGCTGCTATTACGCAAGATGATAA
ATCTGAAGCTTCAGCCATTTCAGCTGGAAATCAACAAACAGCAAAGATAG
AGAATGATTTTACAACCAACACAAAAGATGCCATTGGACAAGCTCTACTG
TCGATAGCTACTGCCAAAGAACCAACTTCATCCCAAAAGGCTCTTCAAAG
CGATGTAACTCCATCACCAAAACAACCAATTCCTACATCTGAACCATCCA
CAACTGAAcccattcataaaaaatcaagcACAGAGATATTGAAAGAGACA
CTACCTGAAGCGACCAAATCTGAACCACAAATCAGTGCTTCAAAACCTGA
CGCCAGCACATCTAGAACGTCATCACAACCAACATCCATTGTACCTAAGC
CGCCTCCTTCGCCCGGAATTGGATCTGCCCCACCACCACCTCCGCCTGGA
AGTGGATCCgccccaccaccaccaccacctccaccaccgcCGCCAGGATC
ATCGACAGCATCCATTGTTCACCTTCCACCGAAGAAAGATATCATTCCAA
atcgaaaaatgaaaactctTCCCTGGTCAAAAGTTTCGGACGCTCAAATC
AATACATCATTTTGGGGAAATGCCACAGACCGTACAAATCAAatcgattt
tcaaaaacttgaaaagtcaTTTTACTTGAAATCTTCAGATACGGAGAAAA
AGGGAGCTCAAGAGCATCACGAGTCGCCAAAAcaagagaaaaagaaatca
ttACTTGATCCTAAGAAAGCACAAACAATagggattttattaaaaaatcc
aGAATTGGAGcttgaaaatgtgaaaaaacgattGTCAAAATTTGATGTAA
AGAAAGACGGCTCGCTTGATGGTTTGACTTCTGAAGaaattaaagcatta
aaaatctGTGTGCCAACTGATGATGAAAGAAAATTGTTCCATAATAAGAA
AGAGAATGAACTCGTCGATGTTGACAAGTTGGTGTTCGAGCTGACCACCA
TTGATCCGATCGTTTTACAAGATATGTTGGCAAACTTGCTTATTATCCGT
GAAATCCCCGAGCAATTAAGAGGTATTGAGCCACCAATCACAAATGTTAT
CAATGGTTATAAATGTTTACGAGATAGCaaagattttaagaaactcctCG
AGTATATCTTATCCATTGGCAATTATATGAACGGTGGTACCAAAGAGGGA
TGTGCTTATGGCTTTCGGCTAAGCGCGTTACTTAAACTAGCCGAAATCAA
GAGCGCAGATGAGAAAGAGTCGGTACTACAGTTCCTAGTTGAAGAGCTTT
ACCATAAAGACGCCGAGGTATTTGCTTGTTATAAAGAGATGGGCGATCTG
CTTCAAATGAGAAATATTGATGACGTTAAACCTGAATTAAAGGGCGTCGA
AACAGAGCTGGTACAACTGAAAGGTCTTAAAGCCAGTCCTGGAGGTTTCG
ATGAGCAGTTTGTTGAGCAAACAAAGGAATTCATTAATACCCAATCAAAA
GAGCTTCTACGGTTACGACAATTATGGTGTAGCCAGGTTGAGAATCTATC
TTCTCAACTTAAGAAAATGTTTGGCGAGTTCCCGTCTTCAAATATGAAGA
ATTTTATGGAGATTGTCAttaggtttttgaaaaaatacagaAGAATGGCA
CTTGAAGTTGAAGAGAAAGAACAATATATGCAAAAATGGAACaaagaaaa
agcaaacaaaggaCTTTGAATGTTAAAGCGATGGGAACCAAGACAatagc
gtagacaagaggggcgcaaaatttgcgACATTGTAATTGTCTATtgataa
tataaaaatataattactgtgtcataaaaatctccTCTCCTACACAAATA
TTGCGCCCTttttgtctacgctactgcatGACTGAATATTATTCAAGGAT
AACAGTTCTAAGATGTTTTTCAAAGTAATCGGCTACCACCTACATCGTCT
GGAAGAGTATGGAGACTTATCCCCTGAACTTTTCTTTGTAAATCCCCTTA
TACCGATTATCTCTGTAATAATTctttaaaatcatttcaaattcaattcc
gggttgataaaacaaatttcaaCCATCTTTTGGCTCATTATTCTAATTCT
CTTGCCTAGGGGGTTGTATTATTTATTAGTAATTGCggttaaaaaaaagt
tggtatacTCATAATTATACTCCCTCTTCTCTCACAGACCCattaggatt
ttttcagctatTGGGG

Run BLAST on NCBI

transcript from alignment at sc0000079:86383..92344+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007693 ID=TCONS_00007693|Name=TCONS_00007693|organism=Clytia hemisphaerica|type=transcript|length=5962bp|location=Sequence derived from alignment at sc0000079:86383..92344+ (Clytia hemisphaerica)
GTCCGACCAAAGTATTTGAAACAGGTGTGTTTTGTACTTTGTACTATGCT
TTTAGCTGGAGAACTACATTATGAGCAGTTTccaggatttttatttttag
tttgaaggtttttttttggtaaaaagttTGTCTGTTTGCTTACCCATCAA
TATTAAACTAAAGGTTATCTGTTTACTGAATTGCCACAAATCTTTGttgg
aaaaacgaaaaaaagccGTTTTGAATAAACCAATAAGGAAGTTTCTTGAC
TGATATGAAATACCATGTCTAATCTAAAACGGAAATTTTCTCTTGTTTAC
TTTAGCATGGATGTTGCCGATTTGGATTTAGAGGATGGACTCATGGTAAC
ACCAAGCGAAGCCTACGAATTTACCGTTCATTTATACGGCCGCAGTGATA
GCACATCAACAAAATGTGTCCTACAGATTCACTATCACGAAAAGACTTTA
TCGTTATTACGTCATGGACAAAAAGTTGAGAATTATTTGTTCAGCTCTTT
GAGAGATGTCGTCGGAGATGATGAAGTTCCGAGATTGAAAATACGATTCG
ATGATTTCAATCAACTTGATATTGAGACTGGAACATTGGAGAAAAAGAAT
GAGATTTTTACATTATTAACACAAATCATTGATCAACAATATAGGTAGGA
TTATAGTTCTTGTATATATACTTTCTTTTATAAGGGTTAATCATATAGGA
ANTACGGCCGTAGTAATAGCACATCAACAAAATGTGTCCTACAGATTCAC
TACCACGAAAAGACTTTATCGTTATTACGTCATGGACAAAAAGTTGAGAA
TTATTTGTTCAGCTCTTTGAGAGATGTCGTCGGAGATGATGAAGTTCCGA
GATTGAAAATACGATTTGATGATTTCAATCAACTTGATATTGAGACTGGA
ACATTGGAGAAAAAGAATGAGATTTTTACATTATTAACACAAATCATTGA
TCAACAATATAGGTAGGATTATAGTTCTTGTATATATACTTTCTTTTATA
AGGGTAAATCATATAGGAACAAGACAAGGGGCTGAATTTGAACTAACGAC
TAAGAAAAAATCGAAAGGAAGCGTccaatttcagaaattttcgaaATGCA
TTCTGAATATTGTaagcattttaagaacattataaaaaCACTAACAAATA
TAAGAATAGCTCACCCTTAGTCATATTTACTGGTTCTTACGAAAAACGCG
TATTCCAATCTAATATAACATTTTGAATAACTTGAAACAGAATTGCGTAC
AttttagactagagtctacttctggctgaactttgtgAAGAACAGTGAAG
CAGACTAGAGGATTTCGCCATCTTAAAtcttttcactttcattttcaaaa
attatatgaaaacatcaaaacaataaaatgttttctaaaattccATCGaa
gtttatgaaactataatgaaaaggagaaaatacctccaaaatttcaaaac
attcgttTATTGGTCATGGTTTTCTGTTTGATCTTGTGGCATgtatttgc
taccacctcaagcaaagcaaaaaaataaagtcGGCCAAATTACACCGGGC
TACTTATCAgtgccatccagtctatcaaaaagctataagttGCCCTAATA
AGTTACTTATATAACTATAAGTTATTAGGGCTACGTACACTTCGGTATTC
CCATACTGCATTTTCCATACGATGTTCAGAAATATATTTCTGCATTTGCA
GCGACAAACTGATAATTTAAGACTTTTAAGCAAGTAAAATCATTTCCATA
GATCTGAAGACTCAAAAGAGGATGCCGTCGACCCTAGGAGCCACACCATC
AAAGAAGGGATCCTTGACAAGAATGGCCATGGTCTCTTCGCCTCCTTCAT
GTGGCAAGAAAGGTACGTCAAATTGTATCCTGGTCGGATGGATTACCATC
GTGTCAAGGCAACCAATCATGAAGGTCCTGCTCTGAATCAGGTTCGACTA
ACCTCCAATAAATGCTCTATTCGAGCAGTTGACGAGAATACTTTGATACT
CGGCACACCGAATAGAGATTATATATTTCGAATGAGAAAGCATGCTCACG
TCGACCCTCGGACTATGCTTAATGACTGGAGATTGGCTTTTGAGAGAGCA
ATTCAAAAAGGTTCAAAAGAAGTCAGTTTGGTGGACAAACGAAGATTACA
ACACGAAAACAGATTACCCATCAATAGAGGTAAGTAATAGTTTCAATATT
CGTTAGTCTCCTTAGTCCCCTTaggaaaaaaatcttaaaaaaactaaatc
CCCGTTAGcgcaattttcattcattacagCGGAGTCCAAATCGAAACACA
CGGCGGGGAACCCAAATTTGAGCTAAGGACATTTCGAGATATGGAGTAAG
GTGAACAAGGCTTTGTTAACTAAAGGGACGAGAAGAgcttgttcgaatta
aggaaatattcgagttatggaggttcgagttaaagagactccactgtata
tttTTGCCCCTCCACGTTGATAATTTCTCACACTAGAACCAGAGCAAGAA
GTCAAACTGGTTTTGATGATAATCCTTTTGATCTTACAGAGGAGGATGAC
ATTCTCCTCCCTCACTTTCTCCCATCTCTTATTAAGTGATTTGCCTGAGC
TCGAATGGTTGACCAAAAAGTTTCATCCTTTGATAGACTCTGATTCGtat
tttattttagaatttataaaatataaaattttttaactAATTAAAACTTT
AAGGTAAGGAAGACGAAGTACCTCAACCATGTGAAGTCGGAAAGCCTTCG
CCAGCAAATGAAGaaacaaagtttgaaaatgCCCAGAATGCTGCTATTAC
GCAAGATGATAAATCTGAAGCTTCAGCCATTTCAGCTGGAAATCAACAAA
CAGCAAAGATAGAGAATGATTTTACAACCAACACAAAAGATGCCATTGGA
CAAGCTCTACTGTCGATAGCTACTGCCAAAGAACCAACTTCATCCCAAAA
GGCTCTTCAAAGCGATGTAACTCCATCACCAAAACAACCAATTCCTACAT
CTGAACCATCCACAACTGAAcccattcataaaaaatcaagcACAGAGATA
TTGAAAGAGACACTACCTGAAGCGACCAAATCTGAACCACAAATCAGTGC
TTCAAAACCTGACGCCAGCACATCTAGAACGTCATCACAACCAACATCCA
TTGTACCTAAGCCGCCTCCTTCGCCCGGAATTGGATCTGCCCCACCACCA
CCTCCGCCTGGAAGTGGATCCgccccaccaccaccaccacctccaccacc
gcCGCCAGGATCATCGACAGCATCCATTGTTCACCTTCCACCGAAGAAAG
ATATCATTCCAAatcgaaaaatgaaaactctTCCCTGGTCAAAAGTTTCG
GACGCTCAAATCAATACATCATTTTGGGGAAATGCCACAGACCGTACAAA
TCAAatcgattttcaaaaacttgaaaagtcaTTTTACTTGAAATCTTCAG
ATACGGAGAAAAAGGGAGCTCAAGAGCATCACGAGTCGCCAAAAcaagag
aaaaagaaatcattACTTGATCCTAAGAAAGCACAAACAATagggatttt
attaaaaaatccaGAATTGGAGcttgaaaatgtgaaaaaacgattGTCAA
AATTTGATGTAAAGAAAGACGGCTCGCTTGATGGTTTGACTTCTGAAGaa
attaaagcattaaaaatctGTGTGCCAACTGATGATGAAAGAAAATTGTT
CCATAATAAGAAAGGTATGGTGCAGTTAAAATTGATTATCTCAATAATCT
ATAGTAACTTTTTCGCCCGGGGAGGGGTATTTGCTTTCAAAAACGACCTT
ATGTTTGGCCCAATAAATTAGGTCTTTGAAATCTaatccttacagtgcag
agaacaTTTAGCCAATTTGAGCAAAATGGGTGAAAATCAACCCTTACggt
ccattttcttaaaaatacttGTCCATTTGAAGGCAAAATATTTTAACATA
TTCCGAAATTTTTCTTCCCAAAAAACTTCGGTATGCTCATTTTTTACACC
CAGTGAACCCAtacagtgcactttttaaaACAGACCCTTAAGAGtcgcac
gtacggtaggtcatttaccttaaGTGCCCCCAGGATTTTCCATAAGGGTG
CTGCATTATGTTAAATTCAGTGGTCATCTCAAAATTACTTTTAGTTACTT
TTTAGTTTCTTTTTCAATAGACATTTTCAGCGATGATTAAAAGTCTTGCG
TCCTTTTTTTACAGTTAGAACaacttttcagccaaattttagtttatgaa
agtataatttttaataAGATTGCGAATTCATTTTTATGATTTCAGAGAAT
GAACTCGTCGATGTTGACAAGTTGGTGTTCGAGCTGACCACCATTGATCC
GATCGTTTTACAAGATATGTTGGCAAACTTGCTTATTATCCGTGAAATCC
CCGAGCAATTAAGAGGTATAAACTTGAAACTATTCATGATCTGAGGCCTT
GTTCGCACGAAACGATTCCGCTTCGCTTCGGAACGAAATGCAGCCATGtt
acttgaatgtaaccaatataATGATATTTTGTATCTGTATCGTTAAGTGC
GTCAAAGTACACTttcatttacacgttttttaaaaactatataagaacac
aaggcttcgatggccaagaCAATAAGtagaaattaaaaacattttatggc
tttgtggattctaaaacaccaaatttttcagaaaaatatacaaaaaactt
acaaaatagtgaaaaataagaatattttaagaacatttttaaaagtttct
tttgttttcttttaataCTTTTCCGGATACCCTGTCTAAACATGAAAAAA
CATATTGATTTCTTTTAGGTATTGAGCCACCAATCACAAATGTTATCAAT
GGTTATAAATGTTTACGAGATAGCaaagattttaagaaactcctCGAGTA
TATCTTATCCATTGGCAATTATATGAACGGTGGTACCAAAGAGGGATGTG
CTTATGGCTTTCGGCTAAGCGCGTTACTTAAACTAGCCGAAATCAAGAGC
GCAGATGAGAAAGAGTCGGTACTACAGTTCCTAGTTGAAGAGCTTTACCA
TAAAGACGCCGAGGTATTTGCTTGTTATAAAGAGATGGGCGATCTGCTTC
AAATGAGAAATATTGATGACGTTAAACCTGAATTAAAGGGCGTCGAAACA
GAGCTGGTACAACTGAAAGGTCTTAAAGCCAGTCCTGGAGGTTTCGATGA
GCAGTTTGTTGAGCAAACAAAGGAATTCATTAATACCCAATCAAAAGAGC
TTCTACGGTTACGACAATTATGGTGTAGCCAGGTTGAGAATCTATCTTCT
CAACTTAAGAAAATGTTTGGCGAGTTCCCGTCTTCAAATATGAAGAATTT
TATGGAGATTGTCAttaggtttttgaaaaaatacagaAGAATGGCACTTG
AAGTTGAAGAGAAAGAACAATATATGCAAAAATGGAACaaagaaaaagca
aacaaaggaCTTTGAATGTTAAAGCGATGGGAACCAAGACAatagcgtag
acaagaggggcgcaaaatttgcgACATTGTAATTGTCTATtgataatata
aaaatataattactgtgtcataaaaatctccTCTCCTACACAAATATTGC
GCCCTttttgtctacgctactgcatGACTGAATATTATTCAAGGATAACA
GTTCTAAGATGTTTTTCAAAGTAATCGGCTACCACCTACATCGTCTGGAA
GAGTATGGAGACTTATCCCCTGAACTTTTCTTTGTAAATCCCCTTATACC
GATTATCTCTGTAATAATTctttaaaatcatttcaaattcaattccgggt
tgataaaacaaatttcaaCCATCTTTTGGCTCATTATTCTAATTCTCTTG
CCTAGGGGGTTGTATTATTTATTAGTAATTGCggttaaaaaaaagttggt
atacTCATAATTATACTCCCTCTTCTCTCACAGACCCattaggatttttt
cagctatTGGGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004360	XLOC_004360	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000079	supercontig	sc0000079:86383..92344 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.205442	0.0797888	0	0.26168	0	0.618105	1.50429	0.289312	0.000129021	0	1.637e-09	3.79482	4.11247	3.29687	4.64896	1.07656	2.81913	4.96694	7.44299	0.785825	0.105275	1.18832	0.50296	5.56465	2.84363	3.70827	2.65643	0.0272834	0.21486

Blast

[Close]

BLAST of TCONS_00007693 vs. Swiss-Prot (Human)
Match: DAAM1 (Disheveled-associated activator of morphogenesis 1 OS=Homo sapiens GN=DAAM1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 4.593e-23
Identity = 96/369 (26.02%), Postives = 184/369 (49.86%), Query Frame = 2

Query: 1397 PNRKMKTLPWSKVSDAQINTSFWGNATDRT--NQIDFQKLEKSF--------YLKSSDTEKKGAQ---EHHESPKQEKKKSLLDPKKAQTIGILLKNPELELENVKKRLSKFDVKKDGSLDGLTSEEIKALKICVPTDDERKLF--HNKKENELVDVDKLVFELTTIDPIVLQDMLANLLIIREIPEQLRGIEPPITNVINGYKCLRDSKDFKKLLEYILSIGNYMNGGTKEGCAYGFRLSALLKLAEIKSA-DEKESVLQFLVEELYHKDAEVFACYKEMGDLLQM---------RNIDDVKPELKGVETELVQLKGLKASPGGFDEQFVEQTKEFINTQSKELLRLRQLWCSQVENLSSQLKKMFGE 2428
            P   +K+  WSK+ + ++  + W    D      +D + LE++F        +  +S++++K A    +   S  + K+ S++D ++AQ   ILL   +L  + +K+ +   D ++D     L  + ++ L   VP   +  L   H  + + +   D+ +FE++ I+    Q  L +L   ++  E++  ++P +  + +G + +  S   K+LLE +L+ GNYMN G + G AYGF++S+L K+A+ KS+ D+  ++L +L+  + +K   V    +E+ D+ Q          + I  ++  LK VETEL   K     PG   ++FV    +FI   S     +  L  ++ ++L ++  K FGE
Sbjct:  606 PTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQED-----LPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINH--YQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKGQR-GNAYGFKISSLNKIADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPG---DKFVSVVSQFITVASFSFSDVEDL-LAEAKDLFTKAVKHFGE 962

The following BLAST results are available for this feature:

BLAST of TCONS_00007693 vs. Swiss-Prot (Human)

BLAST of TCONS_00007693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DAAM1	4.593e-23	26.02	Disheveled-associated activator of morphogenesis 1...	[more]

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TCONS_00007693 (transcript) - C. hemisphaerica